{"id":"https://openalex.org/W2897940425","doi":"https://doi.org/10.1016/j.softx.2018.09.003","title":"SimPrily: A Python framework to simplify high-throughput genomic simulations","display_name":"SimPrily: A Python framework to simplify high-throughput genomic simulations","publication_year":2018,"publication_date":"2018-01-01","ids":{"openalex":"https://openalex.org/W2897940425","doi":"https://doi.org/10.1016/j.softx.2018.09.003","mag":"2897940425"},"language":"en","primary_location":{"id":"doi:10.1016/j.softx.2018.09.003","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2018.09.003","pdf_url":"http://www.softxjournal.com/article/S2352711018301213/pdf","source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.softxjournal.com/article/S2352711018301213/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003093769","display_name":"Ariella Gladstein","orcid":"https://orcid.org/0000-0001-7735-2336"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Ariella L. Gladstein","raw_affiliation_strings":["Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024704031","display_name":"Consuelo D. Quinto-Cort\u00e9s","orcid":"https://orcid.org/0000-0002-0338-3321"},"institutions":[{"id":"https://openalex.org/I68368234","display_name":"Center for Research and Advanced Studies of the National Polytechnic Institute","ror":"https://ror.org/009eqmr18","country_code":"MX","type":"facility","lineage":["https://openalex.org/I59361560","https://openalex.org/I68368234"]}],"countries":["MX"],"is_corresponding":false,"raw_author_name":"Consuelo D. Quinto-Cort\u00e9s","raw_affiliation_strings":["National Laboratory of Genomics for Biodiversity (LANGEBIO), CINVESTAV, Irapuato, Guanajuato, 36821, Mexico"],"affiliations":[{"raw_affiliation_string":"National Laboratory of Genomics for Biodiversity (LANGEBIO), CINVESTAV, Irapuato, Guanajuato, 36821, Mexico","institution_ids":["https://openalex.org/I68368234"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043635948","display_name":"Julian Pistorius","orcid":"https://orcid.org/0000-0002-3485-0084"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Julian L. Pistorius","raw_affiliation_strings":["CyVerse, BIO5 Institute, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"CyVerse, BIO5 Institute, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039252790","display_name":"D. K. Sheena Christy","orcid":"https://orcid.org/0000-0002-1349-1692"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"David Christy","raw_affiliation_strings":["Department of Computer Science, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5059250083","display_name":"Logan Gantner","orcid":null},"institutions":[{"id":"https://openalex.org/I4210131439","display_name":"Applied Mathematics (United States)","ror":"https://ror.org/03seew607","country_code":"US","type":"company","lineage":["https://openalex.org/I4210131439"]},{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Logan Gantner","raw_affiliation_strings":["Graduate Interdisciplinary Program in Applied Mathematics, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"Graduate Interdisciplinary Program in Applied Mathematics, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243","https://openalex.org/I4210131439"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028160810","display_name":"Blake L. Joyce","orcid":"https://orcid.org/0000-0002-4784-2251"},"institutions":[{"id":"https://openalex.org/I138006243","display_name":"University of Arizona","ror":"https://ror.org/03m2x1q45","country_code":"US","type":"education","lineage":["https://openalex.org/I138006243"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Blake L. Joyce","raw_affiliation_strings":["CyVerse, BIO5 Institute, University of Arizona, Tucson, AZ, 85721, USA"],"affiliations":[{"raw_affiliation_string":"CyVerse, BIO5 Institute, University of Arizona, Tucson, AZ, 85721, USA","institution_ids":["https://openalex.org/I138006243"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003093769"],"corresponding_institution_ids":["https://openalex.org/I138006243"],"apc_list":{"value":500,"currency":"USD","value_usd":500},"apc_paid":{"value":500,"currency":"USD","value_usd":500},"fwci":0.1855,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.54184297,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":95},"biblio":{"volume":"7","issue":null,"first_page":"335","last_page":"340"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.991599977016449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9884999990463257,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/python","display_name":"Python (programming language)","score":0.8652313947677612},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.776015043258667},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5862408876419067},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.5123132467269897},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.49667054414749146},{"id":"https://openalex.org/keywords/grid","display_name":"Grid","score":0.4671601355075836},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.444334477186203},{"id":"https://openalex.org/keywords/open-source","display_name":"Open source","score":0.42167460918426514},{"id":"https://openalex.org/keywords/grid-computing","display_name":"Grid computing","score":0.42087456583976746},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.41892117261886597},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.36317431926727295},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.3565678894519806},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3213239908218384},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.20483464002609253},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1752183437347412},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.11705535650253296},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09663349390029907}],"concepts":[{"id":"https://openalex.org/C519991488","wikidata":"https://www.wikidata.org/wiki/Q28865","display_name":"Python (programming language)","level":2,"score":0.8652313947677612},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.776015043258667},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5862408876419067},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.5123132467269897},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.49667054414749146},{"id":"https://openalex.org/C187691185","wikidata":"https://www.wikidata.org/wiki/Q2020720","display_name":"Grid","level":2,"score":0.4671601355075836},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.444334477186203},{"id":"https://openalex.org/C3018397939","wikidata":"https://www.wikidata.org/wiki/Q3644502","display_name":"Open source","level":3,"score":0.42167460918426514},{"id":"https://openalex.org/C70429105","wikidata":"https://www.wikidata.org/wiki/Q249999","display_name":"Grid computing","level":3,"score":0.42087456583976746},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.41892117261886597},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.36317431926727295},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.3565678894519806},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3213239908218384},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.20483464002609253},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1752183437347412},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.11705535650253296},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09663349390029907},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.softx.2018.09.003","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2018.09.003","pdf_url":"http://www.softxjournal.com/article/S2352711018301213/pdf","source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},{"id":"pmh:oai:repository.arizona.edu:10150/632629","is_oa":true,"landing_page_url":"http://hdl.handle.net/10150/632629","pdf_url":null,"source":{"id":"https://openalex.org/S4306400271","display_name":"UA Campus Repository (The University of Arizona)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I138006243","host_organization_name":"University of Arizona","host_organization_lineage":["https://openalex.org/I138006243"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"340","raw_type":"Article"},{"id":"pmh:oai:doaj.org/article:dfe16919304745adbad6be3636caffd0","is_oa":true,"landing_page_url":"https://doaj.org/article/dfe16919304745adbad6be3636caffd0","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"SoftwareX, Vol 7, Iss , Pp 335-340 (2018)","raw_type":"article"},{"id":"pmh:oai:osti.gov:1478442","is_oa":true,"landing_page_url":"https://www.osti.gov/biblio/1478442","pdf_url":null,"source":{"id":"https://openalex.org/S4306402487","display_name":"OSTI OAI (U.S. Department of Energy Office of Scientific and Technical Information)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139351228","host_organization_name":"Office of Scientific and Technical Information","host_organization_lineage":["https://openalex.org/I139351228"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""}],"best_oa_location":{"id":"doi:10.1016/j.softx.2018.09.003","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2018.09.003","pdf_url":"http://www.softxjournal.com/article/S2352711018301213/pdf","source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G8727083658","display_name":null,"funder_award_id":"1148698","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320306084","display_name":"U.S. Department of Energy","ror":"https://ror.org/01bj3aw27"},{"id":"https://openalex.org/F4320332276","display_name":"Advanced Research Projects Agency - Energy","ror":"https://ror.org/03q1rgc19"},{"id":"https://openalex.org/F4320332359","display_name":"Office of Science","ror":"https://ror.org/00mmn6b08"},{"id":"https://openalex.org/F4320337398","display_name":"Division of Biological Infrastructure","ror":"https://ror.org/04qn9mx93"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2897940425.pdf","grobid_xml":"https://content.openalex.org/works/W2897940425.grobid-xml"},"referenced_works_count":38,"referenced_works":["https://openalex.org/W1977623174","https://openalex.org/W1990275569","https://openalex.org/W2025509587","https://openalex.org/W2046956642","https://openalex.org/W2078962046","https://openalex.org/W2104549677","https://openalex.org/W2123638675","https://openalex.org/W2124014047","https://openalex.org/W2124088880","https://openalex.org/W2124300302","https://openalex.org/W2125300654","https://openalex.org/W2136195349","https://openalex.org/W2146803704","https://openalex.org/W2165141658","https://openalex.org/W2168933019","https://openalex.org/W2235409271","https://openalex.org/W2296335794","https://openalex.org/W2301633793","https://openalex.org/W2307588869","https://openalex.org/W2529994670","https://openalex.org/W2613409207","https://openalex.org/W2727609679","https://openalex.org/W2783880833","https://openalex.org/W2786241320","https://openalex.org/W2791976732","https://openalex.org/W2810636639","https://openalex.org/W2899895887","https://openalex.org/W2949851869","https://openalex.org/W2950332142","https://openalex.org/W2950732129","https://openalex.org/W2951525638","https://openalex.org/W2951641704","https://openalex.org/W2952767467","https://openalex.org/W2952978770","https://openalex.org/W6678423543","https://openalex.org/W6697144307","https://openalex.org/W6748719811","https://openalex.org/W6765129674"],"related_works":["https://openalex.org/W2341492732","https://openalex.org/W3187193180","https://openalex.org/W106542691","https://openalex.org/W4287027380","https://openalex.org/W1699080303","https://openalex.org/W4297799326","https://openalex.org/W2557718140","https://openalex.org/W67092138","https://openalex.org/W4225687299","https://openalex.org/W1486009489"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2025-10-10T00:00:00"}
