{"id":"https://openalex.org/W4417098042","doi":"https://doi.org/10.1016/j.media.2025.103905","title":"Immunocto: A massive immune cell database auto-generated for histopathology","display_name":"Immunocto: A massive immune cell database auto-generated for histopathology","publication_year":2025,"publication_date":"2025-12-07","ids":{"openalex":"https://openalex.org/W4417098042","doi":"https://doi.org/10.1016/j.media.2025.103905","pmid":"https://pubmed.ncbi.nlm.nih.gov/41401636"},"language":"en","primary_location":{"id":"doi:10.1016/j.media.2025.103905","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2025.103905","pdf_url":null,"source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.media.2025.103905","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Mika\u00ebl Simard","orcid":"https://orcid.org/0000-0003-0610-6319"},"institutions":[{"id":"https://openalex.org/I4210144746","display_name":"The London College","ror":"https://ror.org/0546ajs61","country_code":"GB","type":"education","lineage":["https://openalex.org/I4210144746"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mika\u00ebl Simard","raw_affiliation_strings":["Department of Medical Physics and Biomedical Engineering, University College London, London, UK. Electronic address: m.simard@ucl.ac.uk"],"raw_orcid":"https://orcid.org/0000-0003-0610-6319","affiliations":[{"raw_affiliation_string":"Department of Medical Physics and Biomedical Engineering, University College London, London, UK. Electronic address: m.simard@ucl.ac.uk","institution_ids":["https://openalex.org/I4210144746","https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5111319510","display_name":"Zhuoyan Shen","orcid":"https://orcid.org/0009-0002-8806-1379"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Zhuoyan Shen","raw_affiliation_strings":["Department of Medical Physics and Biomedical Engineering, University College London, London, UK"],"raw_orcid":"https://orcid.org/0009-0002-8806-1379","affiliations":[{"raw_affiliation_string":"Department of Medical Physics and Biomedical Engineering, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035986920","display_name":"Konstantin Br\u00e4utigam","orcid":"https://orcid.org/0000-0002-3966-3579"},"institutions":[{"id":"https://openalex.org/I142947616","display_name":"Institute of Cancer Research","ror":"https://ror.org/043jzw605","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I142947616"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Konstantin Br\u00e4utigam","raw_affiliation_strings":["Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-3966-3579","affiliations":[{"raw_affiliation_string":"Centre for Evolution and Cancer, The Institute of Cancer Research, London, UK","institution_ids":["https://openalex.org/I142947616"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075697235","display_name":"Rasha Abu Eid","orcid":"https://orcid.org/0000-0002-6634-0329"},"institutions":[{"id":"https://openalex.org/I3133184724","display_name":"University College Birmingham","ror":"https://ror.org/042ver755","country_code":"GB","type":"education","lineage":["https://openalex.org/I3133184724"]},{"id":"https://openalex.org/I79619799","display_name":"University of Birmingham","ror":"https://ror.org/03angcq70","country_code":"GB","type":"education","lineage":["https://openalex.org/I79619799"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Rasha Abu-Eid","raw_affiliation_strings":["College of Medicine and Health, School of Dentistry, University of Birmingham, Birmingham, UK"],"raw_orcid":"https://orcid.org/0000-0002-6634-0329","affiliations":[{"raw_affiliation_string":"College of Medicine and Health, School of Dentistry, University of Birmingham, Birmingham, UK","institution_ids":["https://openalex.org/I3133184724","https://openalex.org/I79619799"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5023081058","display_name":"M. Hawkins","orcid":"https://orcid.org/0000-0002-6669-0628"},"institutions":[{"id":"https://openalex.org/I1289784979","display_name":"University College Hospital","ror":"https://ror.org/00wrevg56","country_code":"GB","type":"healthcare","lineage":["https://openalex.org/I1289784979","https://openalex.org/I1340918713"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Maria A. Hawkins","raw_affiliation_strings":["Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Department of Radiotherapy, University College London Hospitals, London, UK"],"raw_orcid":"https://orcid.org/0000-0002-6669-0628","affiliations":[{"raw_affiliation_string":"Department of Medical Physics and Biomedical Engineering, University College London, London, UK; Department of Radiotherapy, University College London Hospitals, London, UK","institution_ids":["https://openalex.org/I1289784979","https://openalex.org/I45129253"]}]},{"author_position":"last","author":{"id":null,"display_name":"Charles-Antoine Collins Fekete","orcid":"https://orcid.org/0009-0009-2972-0128"},"institutions":[{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Charles-Antoine Collins Fekete","raw_affiliation_strings":["Department of Medical Physics and Biomedical Engineering, University College London, London, UK"],"raw_orcid":"https://orcid.org/0009-0009-2972-0128","affiliations":[{"raw_affiliation_string":"Department of Medical Physics and Biomedical Engineering, University College London, London, UK","institution_ids":["https://openalex.org/I45129253"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3970,"currency":"USD","value_usd":3970},"apc_paid":{"value":3970,"currency":"USD","value_usd":3970},"fwci":0.8126,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.74457615,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"109","issue":null,"first_page":"103905","last_page":"103905"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6341999769210815,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.6341999769210815,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.19110000133514404,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12874","display_name":"Digital Imaging for Blood Diseases","score":0.052400000393390656,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6783999800682068},{"id":"https://openalex.org/keywords/digital-pathology","display_name":"Digital pathology","score":0.6577000021934509},{"id":"https://openalex.org/keywords/haematoxylin","display_name":"Haematoxylin","score":0.588699996471405},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.44269999861717224},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4228000044822693},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.41589999198913574},{"id":"https://openalex.org/keywords/histopathology","display_name":"Histopathology","score":0.40709999203681946},{"id":"https://openalex.org/keywords/cell","display_name":"Cell","score":0.40290001034736633}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6783999800682068},{"id":"https://openalex.org/C2777522853","wikidata":"https://www.wikidata.org/wiki/Q5276128","display_name":"Digital pathology","level":2,"score":0.6577000021934509},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6401000022888184},{"id":"https://openalex.org/C2776919888","wikidata":"https://www.wikidata.org/wiki/Q1146112","display_name":"Haematoxylin","level":3,"score":0.588699996471405},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5408999919891357},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.44269999861717224},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4228000044822693},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.41589999198913574},{"id":"https://openalex.org/C544855455","wikidata":"https://www.wikidata.org/wiki/Q1070952","display_name":"Histopathology","level":2,"score":0.40709999203681946},{"id":"https://openalex.org/C1491633281","wikidata":"https://www.wikidata.org/wiki/Q7868","display_name":"Cell","level":2,"score":0.40290001034736633},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.33640000224113464},{"id":"https://openalex.org/C3018252375","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune recognition","level":3,"score":0.3077999949455261},{"id":"https://openalex.org/C2984894117","wikidata":"https://www.wikidata.org/wiki/Q592324","display_name":"Indirect immunofluorescence","level":3,"score":0.2928999960422516},{"id":"https://openalex.org/C115961682","wikidata":"https://www.wikidata.org/wiki/Q860623","display_name":"Image (mathematics)","level":2,"score":0.2897999882698059},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.28949999809265137},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.2838999927043915},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.2824999988079071},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.2720000147819519},{"id":"https://openalex.org/C3020391436","wikidata":"https://www.wikidata.org/wiki/Q715347","display_name":"Lymphocyte subsets","level":4,"score":0.2676999866962433},{"id":"https://openalex.org/C2779190172","wikidata":"https://www.wikidata.org/wiki/Q4913888","display_name":"Binary data","level":3,"score":0.26489999890327454},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.26080000400543213},{"id":"https://openalex.org/C3019060180","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automated method","level":2,"score":0.2549999952316284}],"mesh":[{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001402","descriptor_name":"B-Lymphocytes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D008264","descriptor_name":"Macrophages","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.media.2025.103905","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2025.103905","pdf_url":null,"source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},{"id":"pmid:41401636","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41401636","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical image analysis","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/874789d2-b1b5-4c87-a96e-18890531420f","is_oa":false,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/874789d2-b1b5-4c87-a96e-18890531420f","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Simard, M, Shen, Z, Br\u00e4utigam, K, Abu-Eid, R, Hawkins, M & Collins Fekete, C-A 2025, 'Immunocto : a massive immune cell database auto-generated for histopathology', Medical Image Analysis. https://doi.org/10.1016/j.media.2025.103905","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1016/j.media.2025.103905","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.media.2025.103905","pdf_url":null,"source":{"id":"https://openalex.org/S116571295","display_name":"Medical Image Analysis","issn_l":"1361-8415","issn":["1361-8415","1361-8423","1361-8431"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Medical Image Analysis","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G282277022","display_name":null,"funder_award_id":"C7893/ A28990","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"},{"id":"https://openalex.org/G397079736","display_name":null,"funder_award_id":"P500PM_217647/1","funder_id":"https://openalex.org/F4320333459","funder_display_name":"Swiss Re Foundation"},{"id":"https://openalex.org/G712999444","display_name":null,"funder_award_id":"MR/T040785/1.","funder_id":"https://openalex.org/F4320314731","funder_display_name":"UK Research and Innovation"},{"id":"https://openalex.org/G8623988998","display_name":null,"funder_award_id":"EP/Y020030/1","funder_id":"https://openalex.org/F4320319985","funder_display_name":"Cancer Research UK"}],"funders":[{"id":"https://openalex.org/F4320314731","display_name":"UK Research and Innovation","ror":"https://ror.org/001aqnf71"},{"id":"https://openalex.org/F4320319985","display_name":"Cancer Research UK","ror":"https://ror.org/054225q67"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320333459","display_name":"Swiss Re Foundation","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":14,"referenced_works":["https://openalex.org/W1977530071","https://openalex.org/W2049491375","https://openalex.org/W2081069642","https://openalex.org/W2299919100","https://openalex.org/W2761177724","https://openalex.org/W2794616003","https://openalex.org/W2801309958","https://openalex.org/W2974825848","https://openalex.org/W3165215947","https://openalex.org/W4280494974","https://openalex.org/W4319986478","https://openalex.org/W4381684985","https://openalex.org/W4392883923","https://openalex.org/W4405566765"],"related_works":[],"abstract_inverted_index":{"H&E":[0,36,62],"image":[1],"at":[2],"40":[3],"\u00d7":[4],"magnification,":[5],"along":[6],"with":[7],"a":[8,15],"binary":[9],"mask":[10],"of":[11,59],"the":[12,32,57],"nucleus":[13],"and":[14,63],"label.":[16],"The":[17,54],"database,":[18],"which":[19],"is":[20],"made":[21],"publicly":[22],"available,":[23],"can":[24],"be":[25],"used":[26],"to":[27,30,66],"train":[28],"models":[29,43],"study":[31],"TIME":[33],"on":[34,45],"routine":[35],"slides.":[37],"We":[38],"show":[39],"that":[40],"deep":[41],"learning":[42],"trained":[44],"Immunocto":[46],"result":[47],"in":[48],"state-of-the-art":[49],"performance":[50],"for":[51,70],"lymphocyte":[52],"detection.":[53],"approach":[55],"demonstrates":[56],"benefits":[58],"using":[60],"matched":[61],"IF":[64],"data":[65],"generate":[67],"robust":[68],"databases":[69],"computational":[71],"pathology":[72],"applications.":[73]},"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-12-07T00:00:00"}
