{"id":"https://openalex.org/W4410065093","doi":"https://doi.org/10.1016/j.knosys.2025.113699","title":"MSN-DTA: A multi-scale node adaptive graph neural network for interpretable drug-target binding affinity prediction","display_name":"MSN-DTA: A multi-scale node adaptive graph neural network for interpretable drug-target binding affinity prediction","publication_year":2025,"publication_date":"2025-05-04","ids":{"openalex":"https://openalex.org/W4410065093","doi":"https://doi.org/10.1016/j.knosys.2025.113699"},"language":"en","primary_location":{"id":"doi:10.1016/j.knosys.2025.113699","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.knosys.2025.113699","pdf_url":null,"source":{"id":"https://openalex.org/S10169007","display_name":"Knowledge-Based Systems","issn_l":"0950-7051","issn":["0950-7051","1872-7409"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Knowledge-Based Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107343847","display_name":"Jianxin Wang","orcid":"https://orcid.org/0000-0003-1516-0480"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jianxin Wang","raw_affiliation_strings":["School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China","institution_ids":["https://openalex.org/I143413998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046735197","display_name":"Pengju Ding","orcid":"https://orcid.org/0009-0005-7366-2878"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pengju Ding","raw_affiliation_strings":["Qingdao Institute of Software, College of Computer Science and technology, China University of Petroleum, Qingdao, 266580, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, College of Computer Science and technology, China University of Petroleum, Qingdao, 266580, China","institution_ids":["https://openalex.org/I143413998","https://openalex.org/I4210162190"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086260915","display_name":"Yongxin Zhu","orcid":"https://orcid.org/0000-0002-1813-1792"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongxin Zhu","raw_affiliation_strings":["School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China","institution_ids":["https://openalex.org/I143413998"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Xin Gao","orcid":"https://orcid.org/0000-0002-7108-3574"},"institutions":[{"id":"https://openalex.org/I71920554","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38","country_code":"SA","type":"education","lineage":["https://openalex.org/I71920554"]}],"countries":["SA"],"is_corresponding":false,"raw_author_name":"Xin Gao","raw_affiliation_strings":["Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia"],"raw_orcid":"https://orcid.org/0000-0002-7108-3574","affiliations":[{"raw_affiliation_string":"Computational Bioscience Research Center (CBRC), Computer, Electrical and Mathematical Sciences and Engineering Division, King Abdullah University of Science and Technology (KAUST), Thuwal, 23955, Saudi Arabia","institution_ids":["https://openalex.org/I71920554"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009070599","display_name":"Xu Yu","orcid":"https://orcid.org/0000-0003-4913-5734"},"institutions":[{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]},{"id":"https://openalex.org/I4210162190","display_name":"China University of Petroleum, East China","ror":"https://ror.org/05gbn2817","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210162190"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Xu Yu","raw_affiliation_strings":["Qingdao Institute of Software, College of Computer Science and technology, China University of Petroleum, Qingdao, 266580, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Qingdao Institute of Software, College of Computer Science and technology, China University of Petroleum, Qingdao, 266580, China","institution_ids":["https://openalex.org/I143413998","https://openalex.org/I4210162190"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100646131","display_name":"Bin Yu","orcid":"https://orcid.org/0000-0002-2453-7852"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]},{"id":"https://openalex.org/I143413998","display_name":"Qingdao University of Science and Technology","ror":"https://ror.org/041j8js14","country_code":"CN","type":"education","lineage":["https://openalex.org/I143413998"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Bin Yu","raw_affiliation_strings":["School of Artificial Intelligence and Data Science, University of Science and Technology of China, Hefei, 230026, China","School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China"],"raw_orcid":"https://orcid.org/0000-0002-2453-7852","affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence and Data Science, University of Science and Technology of China, Hefei, 230026, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"School of Data Science, Qingdao University of Science and Technology, Qingdao, 266061, China","institution_ids":["https://openalex.org/I143413998"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5009070599","https://openalex.org/A5100646131"],"corresponding_institution_ids":["https://openalex.org/I126520041","https://openalex.org/I143413998","https://openalex.org/I4210162190"],"apc_list":{"value":3130,"currency":"USD","value_usd":3130},"apc_paid":null,"fwci":7.9542,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.97488846,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":99},"biblio":{"volume":"320","issue":null,"first_page":"113699","last_page":"113699"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9894999861717224,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10911","display_name":"Chemical Synthesis and Analysis","score":0.9876999855041504,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5523126125335693},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5301398038864136},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.4778016209602356},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.46399590373039246},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.44690248370170593},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.44564732909202576},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.4122045338153839},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.36943483352661133},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.35306960344314575},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3430158495903015},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33692502975463867},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.33016425371170044},{"id":"https://openalex.org/keywords/combinatorial-chemistry","display_name":"Combinatorial chemistry","score":0.32054561376571655},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.16219839453697205},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1385825276374817},{"id":"https://openalex.org/keywords/pharmacology","display_name":"Pharmacology","score":0.12699168920516968},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1095830500125885},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.08971032500267029}],"concepts":[{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5523126125335693},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5301398038864136},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.4778016209602356},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.46399590373039246},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.44690248370170593},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.44564732909202576},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.4122045338153839},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.36943483352661133},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.35306960344314575},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3430158495903015},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33692502975463867},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.33016425371170044},{"id":"https://openalex.org/C21951064","wikidata":"https://www.wikidata.org/wiki/Q899212","display_name":"Combinatorial chemistry","level":1,"score":0.32054561376571655},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.16219839453697205},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1385825276374817},{"id":"https://openalex.org/C98274493","wikidata":"https://www.wikidata.org/wiki/Q128406","display_name":"Pharmacology","level":1,"score":0.12699168920516968},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1095830500125885},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.08971032500267029},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.knosys.2025.113699","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.knosys.2025.113699","pdf_url":null,"source":{"id":"https://openalex.org/S10169007","display_name":"Knowledge-Based Systems","issn_l":"0950-7051","issn":["0950-7051","1872-7409"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Knowledge-Based Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G184744897","display_name":null,"funder_award_id":"62172249","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G1855874953","display_name":null,"funder_award_id":"ZR2021MF098","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G4257553998","display_name":null,"funder_award_id":"FCC/1/1976\\u201344\\u201301","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"},{"id":"https://openalex.org/G5049754085","display_name":null,"funder_award_id":"62172248","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G8253667702","display_name":null,"funder_award_id":"FCC/1/1976-44-01","funder_id":"https://openalex.org/F4320322320","funder_display_name":"King Abdullah University of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320322320","display_name":"King Abdullah University of Science and Technology","ror":"https://ror.org/01q3tbs38"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":65,"referenced_works":["https://openalex.org/W1466286227","https://openalex.org/W1678356000","https://openalex.org/W1975147762","https://openalex.org/W1976848779","https://openalex.org/W1992041755","https://openalex.org/W2000837423","https://openalex.org/W2017096221","https://openalex.org/W2035585923","https://openalex.org/W2044424923","https://openalex.org/W2086286404","https://openalex.org/W2125782079","https://openalex.org/W2140679639","https://openalex.org/W2155744824","https://openalex.org/W2472384656","https://openalex.org/W2565356656","https://openalex.org/W2605952223","https://openalex.org/W2744129621","https://openalex.org/W2775714759","https://openalex.org/W2785947426","https://openalex.org/W2806547269","https://openalex.org/W2807704635","https://openalex.org/W2808199968","https://openalex.org/W2809094384","https://openalex.org/W2899788782","https://openalex.org/W2911836968","https://openalex.org/W2911871527","https://openalex.org/W2919115771","https://openalex.org/W2962711740","https://openalex.org/W2964015378","https://openalex.org/W2970628659","https://openalex.org/W3029836473","https://openalex.org/W3043750334","https://openalex.org/W3096561213","https://openalex.org/W3133744637","https://openalex.org/W3156588754","https://openalex.org/W3200409365","https://openalex.org/W3210755349","https://openalex.org/W3215525389","https://openalex.org/W4200171665","https://openalex.org/W4200547951","https://openalex.org/W4205167309","https://openalex.org/W4282917061","https://openalex.org/W4295292728","https://openalex.org/W4297733535","https://openalex.org/W4323650483","https://openalex.org/W4367043522","https://openalex.org/W4387675955","https://openalex.org/W4388006581","https://openalex.org/W4388571136","https://openalex.org/W4388766745","https://openalex.org/W4390659208","https://openalex.org/W4396680512","https://openalex.org/W4396935838","https://openalex.org/W4398771581","https://openalex.org/W6601955380","https://openalex.org/W6678941407","https://openalex.org/W6680532216","https://openalex.org/W6681513673","https://openalex.org/W6761665040","https://openalex.org/W6767235624","https://openalex.org/W6790850195","https://openalex.org/W6797152294","https://openalex.org/W6845636855","https://openalex.org/W6850636830","https://openalex.org/W7075630220"],"related_works":["https://openalex.org/W4206379684","https://openalex.org/W2366105490","https://openalex.org/W2580680567","https://openalex.org/W2606076248","https://openalex.org/W2391251536","https://openalex.org/W4285170202","https://openalex.org/W114270996","https://openalex.org/W4249200654","https://openalex.org/W2396656278","https://openalex.org/W1985010875"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":3}],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-10T00:00:00"}
