{"id":"https://openalex.org/W7117674648","doi":"https://doi.org/10.1016/j.inffus.2025.104109","title":"Subgraph-focused biomedical knowledge embedding with bi-semantic encoder for multi-type drug-drug interaction prediction","display_name":"Subgraph-focused biomedical knowledge embedding with bi-semantic encoder for multi-type drug-drug interaction prediction","publication_year":2025,"publication_date":"2025-12-31","ids":{"openalex":"https://openalex.org/W7117674648","doi":"https://doi.org/10.1016/j.inffus.2025.104109"},"language":"en","primary_location":{"id":"doi:10.1016/j.inffus.2025.104109","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.inffus.2025.104109","pdf_url":null,"source":{"id":"https://openalex.org/S7560371","display_name":"Information Fusion","issn_l":"1566-2535","issn":["1566-2535","1872-6305"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Fusion","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5075836788","display_name":"Xiangpeng Bi","orcid":"https://orcid.org/0000-0003-4712-0870"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiangpeng Bi","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0003-4712-0870","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121620795","display_name":"Wenjian Ma","orcid":null},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenjian Ma","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0001-8725-1029","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032230008","display_name":"Huasen Jiang","orcid":"https://orcid.org/0000-0001-6802-1017"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Huasen Jiang","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0001-6802-1017","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121614168","display_name":"Qing Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Qing Cai","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0002-9780-3410","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5121619344","display_name":"Jie Nie","orcid":null},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Nie","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0003-4952-7666","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhiqiang Wei","orcid":"https://orcid.org/0000-0002-2774-3168"},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhiqiang Wei","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","College of Computer Science and Technology, Qingdao University, Qingdao, 266071, China"],"raw_orcid":"https://orcid.org/0000-0002-2774-3168","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]},{"raw_affiliation_string":"College of Computer Science and Technology, Qingdao University, Qingdao, 266071, China","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5121615334","display_name":"Shugang Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I59028903","display_name":"Ocean University of China","ror":"https://ror.org/04rdtx186","country_code":"CN","type":"education","lineage":["https://openalex.org/I59028903"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Shugang Zhang","raw_affiliation_strings":["College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China"],"raw_orcid":"https://orcid.org/0000-0002-9774-9709","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Ocean University of China, Qingdao, 266100, China","institution_ids":["https://openalex.org/I59028903"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5121615334"],"corresponding_institution_ids":["https://openalex.org/I59028903"],"apc_list":{"value":4650,"currency":"USD","value_usd":4650},"apc_paid":null,"fwci":2.792,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.92897235,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"130","issue":null,"first_page":"104109","last_page":"104109"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.32600000500679016,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.32600000500679016,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.3138999938964844,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.22750000655651093,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5989999771118164},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5546000003814697},{"id":"https://openalex.org/keywords/generalization","display_name":"Generalization","score":0.5311999917030334},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5005000233650208},{"id":"https://openalex.org/keywords/encoder","display_name":"Encoder","score":0.49129998683929443},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4652000069618225},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4544000029563904}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8167999982833862},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5989999771118164},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5546000003814697},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.5311999917030334},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5005000233650208},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.49129998683929443},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4652000069618225},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4616999924182892},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4544000029563904},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.450300008058548},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44589999318122864},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.35179999470710754},{"id":"https://openalex.org/C38764148","wikidata":"https://www.wikidata.org/wiki/Q17098245","display_name":"Interaction information","level":2,"score":0.31439998745918274},{"id":"https://openalex.org/C2987255567","wikidata":"https://www.wikidata.org/wiki/Q33002955","display_name":"Knowledge graph","level":2,"score":0.3093000054359436},{"id":"https://openalex.org/C207685749","wikidata":"https://www.wikidata.org/wiki/Q2088941","display_name":"Domain knowledge","level":2,"score":0.3082999885082245},{"id":"https://openalex.org/C161301231","wikidata":"https://www.wikidata.org/wiki/Q3478658","display_name":"Knowledge representation and reasoning","level":2,"score":0.2973000109195709},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.29350000619888306},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.26660001277923584},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.2524999976158142},{"id":"https://openalex.org/C101738243","wikidata":"https://www.wikidata.org/wiki/Q786435","display_name":"Autoencoder","level":3,"score":0.2522999942302704}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.inffus.2025.104109","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.inffus.2025.104109","pdf_url":null,"source":{"id":"https://openalex.org/S7560371","display_name":"Information Fusion","issn_l":"1566-2535","issn":["1566-2535","1872-6305"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Fusion","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6467937231063843}],"awards":[{"id":"https://openalex.org/G4770654476","display_name":null,"funder_award_id":"202561013","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7335442858","display_name":null,"funder_award_id":"ZR2025MS1069","funder_id":"https://openalex.org/F4320324174","funder_display_name":"Natural Science Foundation of Shandong Province"},{"id":"https://openalex.org/G8562008206","display_name":null,"funder_award_id":"62306293","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324174","display_name":"Natural Science Foundation of Shandong Province","ror":null},{"id":"https://openalex.org/F4320327912","display_name":"Higher Education Discipline Innovation Project","ror":null},{"id":"https://openalex.org/F4320328119","display_name":"National University's Basic Research Foundation of China","ror":null},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W2091439417","https://openalex.org/W2106391842","https://openalex.org/W2141432783","https://openalex.org/W2155723007","https://openalex.org/W2170146596","https://openalex.org/W2625343706","https://openalex.org/W2766208765","https://openalex.org/W2786016794","https://openalex.org/W2802200505","https://openalex.org/W2904451610","https://openalex.org/W2949311246","https://openalex.org/W3022358203","https://openalex.org/W3024894285","https://openalex.org/W3089843526","https://openalex.org/W3093150592","https://openalex.org/W3111386522","https://openalex.org/W3116099552","https://openalex.org/W3139253280","https://openalex.org/W3157889929","https://openalex.org/W3160363665","https://openalex.org/W3198322284","https://openalex.org/W3213871890","https://openalex.org/W4205450747","https://openalex.org/W4224322651","https://openalex.org/W4226142803","https://openalex.org/W4285029539","https://openalex.org/W4285165731","https://openalex.org/W4294908374","https://openalex.org/W4296044817","https://openalex.org/W4307838179","https://openalex.org/W4313405519","https://openalex.org/W4318983406","https://openalex.org/W4322501430","https://openalex.org/W4380136659","https://openalex.org/W4380303532","https://openalex.org/W4385573706","https://openalex.org/W4388411932","https://openalex.org/W4388615774","https://openalex.org/W4389937842","https://openalex.org/W4390005328","https://openalex.org/W4390245896","https://openalex.org/W4391361452","https://openalex.org/W4391737993","https://openalex.org/W4394994664","https://openalex.org/W4399528430","https://openalex.org/W4400111732","https://openalex.org/W4400525727","https://openalex.org/W4401814202","https://openalex.org/W4401918320","https://openalex.org/W4403122920","https://openalex.org/W4403335414","https://openalex.org/W4403402796","https://openalex.org/W4403600529","https://openalex.org/W4404448644","https://openalex.org/W4406983021","https://openalex.org/W4409014119","https://openalex.org/W4411726016"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":2}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-12-31T00:00:00"}