{"id":"https://openalex.org/W4409208920","doi":"https://doi.org/10.1016/j.future.2025.107838","title":"Analyzing the performance portability of SYCL across CPUs, GPUs, and hybrid systems with SW sequence alignment","display_name":"Analyzing the performance portability of SYCL across CPUs, GPUs, and hybrid systems with SW sequence alignment","publication_year":2025,"publication_date":"2025-04-07","ids":{"openalex":"https://openalex.org/W4409208920","doi":"https://doi.org/10.1016/j.future.2025.107838"},"language":"en","primary_location":{"id":"doi:10.1016/j.future.2025.107838","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.future.2025.107838","pdf_url":null,"source":{"id":"https://openalex.org/S186357190","display_name":"Future Generation Computer Systems","issn_l":"0167-739X","issn":["0167-739X","1872-7115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Future Generation Computer Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.future.2025.107838","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5043791959","display_name":"Manuel Costanzo","orcid":"https://orcid.org/0000-0002-6937-3943"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Manuel Costanzo","raw_affiliation_strings":["III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065094174","display_name":"Enzo Rucci","orcid":"https://orcid.org/0000-0001-6736-7358"},"institutions":[{"id":"https://openalex.org/I4210122970","display_name":"Comisi\u00f3n de Investigaciones Cient\u00edficas","ror":"https://ror.org/02s7sax82","country_code":"AR","type":"government","lineage":["https://openalex.org/I4210122970"]},{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Enzo Rucci","raw_affiliation_strings":["Comisi\u00f3n de Investigaciones Cient\u00edficas (CIC), La Plata, Buenos Aires, Argentina","III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina"],"raw_orcid":"https://orcid.org/0000-0001-6736-7358","affiliations":[{"raw_affiliation_string":"Comisi\u00f3n de Investigaciones Cient\u00edficas (CIC), La Plata, Buenos Aires, Argentina","institution_ids":["https://openalex.org/I4210122970"]},{"raw_affiliation_string":"III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5048493144","display_name":"Carlos Garc\u00eda","orcid":"https://orcid.org/0000-0002-3470-1097"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Garc\u00eda-S\u00e1nchez","raw_affiliation_strings":["Dpto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, Madrid, 28040, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, Madrid, 28040, Spain","institution_ids":["https://openalex.org/I121748325"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084392593","display_name":"Marcelo Naiouf","orcid":"https://orcid.org/0000-0001-9127-3212"},"institutions":[{"id":"https://openalex.org/I874386039","display_name":"Universidad Nacional de La Plata","ror":"https://ror.org/01tjs6929","country_code":"AR","type":"education","lineage":["https://openalex.org/I874386039"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Marcelo Naiouf","raw_affiliation_strings":["III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"III-LIDI, Facultad de Inform\u00e1tica, Universidad Nacional de La Plata, La Plata, (1900), Buenos Aires, Argentina","institution_ids":["https://openalex.org/I874386039"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5047526101","display_name":"Manuel Prieto","orcid":"https://orcid.org/0000-0003-0687-3737"},"institutions":[{"id":"https://openalex.org/I121748325","display_name":"Universidad Complutense de Madrid","ror":"https://ror.org/02p0gd045","country_code":"ES","type":"education","lineage":["https://openalex.org/I121748325"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Manuel Prieto-Mat\u00edas","raw_affiliation_strings":["Dpto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, Madrid, 28040, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dpto. Arquitectura de Computadores y Autom\u00e1tica, Universidad Complutense de Madrid, Madrid, 28040, Spain","institution_ids":["https://openalex.org/I121748325"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065094174"],"corresponding_institution_ids":["https://openalex.org/I4210122970","https://openalex.org/I874386039"],"apc_list":{"value":3000,"currency":"USD","value_usd":3000},"apc_paid":{"value":3000,"currency":"USD","value_usd":3000},"fwci":1.8454,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.84316024,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"170","issue":null,"first_page":"107838","last_page":"107838"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9801999926567078,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9789999723434448,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.9055217504501343},{"id":"https://openalex.org/keywords/software-portability","display_name":"Software portability","score":0.8416849374771118},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5827009081840515},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5737215280532837},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.23195898532867432}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.9055217504501343},{"id":"https://openalex.org/C63000827","wikidata":"https://www.wikidata.org/wiki/Q3080428","display_name":"Software portability","level":2,"score":0.8416849374771118},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5827009081840515},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5737215280532837},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.23195898532867432},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.future.2025.107838","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.future.2025.107838","pdf_url":null,"source":{"id":"https://openalex.org/S186357190","display_name":"Future Generation Computer Systems","issn_l":"0167-739X","issn":["0167-739X","1872-7115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Future Generation Computer Systems","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.future.2025.107838","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.future.2025.107838","pdf_url":null,"source":{"id":"https://openalex.org/S186357190","display_name":"Future Generation Computer Systems","issn_l":"0167-739X","issn":["0167-739X","1872-7115"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Future Generation Computer Systems","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Affordable and clean energy","id":"https://metadata.un.org/sdg/7","score":0.7300000190734863}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322930","display_name":"Ministerio de Ciencia e Innovaci\u00f3n","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334954","display_name":"Agencia Espa\u00f1ola de Cooperaci\u00f3n Internacional para el Desarrollo","ror":"https://ror.org/00r6akf90"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":"https://ror.org/003x0zc53"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":50,"referenced_works":["https://openalex.org/W1984222112","https://openalex.org/W2087064593","https://openalex.org/W2098232690","https://openalex.org/W2328002359","https://openalex.org/W2398736067","https://openalex.org/W2536286076","https://openalex.org/W2587809016","https://openalex.org/W2743401659","https://openalex.org/W2952720949","https://openalex.org/W3148746312","https://openalex.org/W3167299137","https://openalex.org/W4225548362","https://openalex.org/W4233182706","https://openalex.org/W4235135310","https://openalex.org/W4237468342","https://openalex.org/W4252178616","https://openalex.org/W4288421439","https://openalex.org/W4376610236","https://openalex.org/W4382394648","https://openalex.org/W4385965947","https://openalex.org/W4387401444","https://openalex.org/W4387595827","https://openalex.org/W4388561682","https://openalex.org/W4391988662","https://openalex.org/W4392881826","https://openalex.org/W4393970817","https://openalex.org/W4399115059","https://openalex.org/W4399794143","https://openalex.org/W4403556344","https://openalex.org/W4403998417","https://openalex.org/W6667696286","https://openalex.org/W6676121456","https://openalex.org/W6728547154","https://openalex.org/W6740524354","https://openalex.org/W6776983245","https://openalex.org/W6796340729","https://openalex.org/W6805705070","https://openalex.org/W6810402598","https://openalex.org/W6840503555","https://openalex.org/W6848664813","https://openalex.org/W6851575638","https://openalex.org/W6855236409","https://openalex.org/W6855566505","https://openalex.org/W6855604509","https://openalex.org/W6856371355","https://openalex.org/W6857332795","https://openalex.org/W6857819801","https://openalex.org/W6858564494","https://openalex.org/W6863475230","https://openalex.org/W6869971275"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W107105315","https://openalex.org/W1584537303","https://openalex.org/W4388155270","https://openalex.org/W4367156293","https://openalex.org/W2750549761","https://openalex.org/W1872724644","https://openalex.org/W2211967836"],"abstract_inverted_index":{"The":[0,75],"high-performance":[1],"computing":[2,17,39,177],"(HPC)":[3],"landscape":[4],"is":[5],"undergoing":[6],"rapid":[7],"transformation,":[8],"with":[9],"an":[10],"increasing":[11],"emphasis":[12],"on":[13,26,88,97,141],"energy-efficient":[14],"and":[15,46,53,61,99,113,152],"heterogeneous":[16,176],"environments.":[18],"This":[19],"comprehensive":[20],"study":[21,73],"extends":[22],"our":[23],"previous":[24],"research":[25],"SYCL\u2019s":[27,78],"performance":[28,85,137,146],"portability":[29,132],"by":[30],"evaluating":[31],"its":[32],"effectiveness":[33,114],"across":[34,80,115],"a":[35,71,170],"broader":[36],"spectrum":[37],"of":[38,105],"architectures":[40,124],",":[41,45],"including":[42,120],"CPUs,":[43],"GPUs":[44,90,101],"hybrid":[47,63,123,134],"CPU\u2013GPU":[48,62,135,153],"configurations":[49],"from":[50,117,125],"NVIDIA,":[51],"Intel,":[52],"AMD.":[54],"Our":[55],"analysis":[56],"covers":[57],"single-GPU,":[58],"multi-GPU,":[59],"single-CPU,":[60],"setups,":[64],"using":[65],"two":[66],"common,":[67],"bioinformatic":[68,181],"applications":[69],"as":[70,169],"case":[72],".":[74],"results":[76],"demonstrate":[77],"versatility":[79,112],"different":[81],"architectures,":[82],"maintaining":[83],"comparable":[84],"to":[86,157],"CUDA":[87],"NVIDIA":[89],"while":[91],"achieving":[92],"similar":[93],"architectural":[94],"efficiency":[95],"rates":[96],"AMD":[98],"Intel":[100],"in":[102,133,150],"the":[103,121],"majority":[104],"cases":[106],"tested.":[107],"SYCL":[108,128,168],"also":[109],"demonstrated":[110],"remarkable":[111],"CPUs":[116],"various":[118],"manufacturers,":[119],"latest":[122],"Intel.":[126],"Although":[127],"showed":[129],"excellent":[130],"functional":[131],"configurations,":[136,154],"varied":[138],"significantly":[139],"based":[140],"specific":[142],"hardware":[143],"combinations.":[144],"Some":[145],"limitations":[147],"were":[148],"identified":[149],"multi-GPU":[151],"primarily":[155],"attributed":[156],"workload":[158],"distribution":[159],"strategies":[160],"rather":[161],"than":[162],"SYCL-specific":[163],"constraints.":[164],"These":[165],"findings":[166],"position":[167],"promising":[171],"unified":[172],"programming":[173],"model":[174],"for":[175,180],"environments,":[178],"particularly":[179],"applications.":[182]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":1}],"updated_date":"2026-08-29T07:29:34.045763","created_date":"2025-10-10T00:00:00"}
