{"id":"https://openalex.org/W4414675233","doi":"https://doi.org/10.1016/j.eswa.2025.129827","title":"GRDGNN: A directed graph neural network framework for multi-relational inference of gene regulatory networks","display_name":"GRDGNN: A directed graph neural network framework for multi-relational inference of gene regulatory networks","publication_year":2025,"publication_date":"2025-09-30","ids":{"openalex":"https://openalex.org/W4414675233","doi":"https://doi.org/10.1016/j.eswa.2025.129827"},"language":"en","primary_location":{"id":"doi:10.1016/j.eswa.2025.129827","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2025.129827","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101724130","display_name":"Wanhong Zhang","orcid":"https://orcid.org/0000-0002-5530-0348"},"institutions":[{"id":"https://openalex.org/I145897649","display_name":"Minzu University of China","ror":"https://ror.org/0044e2g62","country_code":"CN","type":"education","lineage":["https://openalex.org/I145897649"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wanhong Zhang","raw_affiliation_strings":["Department of Electrical Engineering, Northwest Minzu University, Lanzhou, 730030, Gansu, China"],"raw_orcid":"https://orcid.org/0000-0002-5530-0348","affiliations":[{"raw_affiliation_string":"Department of Electrical Engineering, Northwest Minzu University, Lanzhou, 730030, Gansu, China","institution_ids":["https://openalex.org/I145897649"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5081260295","display_name":"Zhenyu Guo","orcid":"https://orcid.org/0000-0003-0524-2693"},"institutions":[{"id":"https://openalex.org/I116265982","display_name":"Qinghai University","ror":"https://ror.org/05h33bt13","country_code":"CN","type":"education","lineage":["https://openalex.org/I116265982"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenyu Guo","raw_affiliation_strings":["School of Energy and Electrical Engineering, Qinghai University, Xining, 810016, Qinghai, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Energy and Electrical Engineering, Qinghai University, Xining, 810016, Qinghai, China","institution_ids":["https://openalex.org/I116265982"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5101724130"],"corresponding_institution_ids":["https://openalex.org/I145897649"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":null,"fwci":1.918,"has_fulltext":false,"cited_by_count":5,"citation_normalized_percentile":{"value":0.86463317,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"298","issue":null,"first_page":"129827","last_page":"129827"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9800000190734863,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6644999980926514},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6248000264167786},{"id":"https://openalex.org/keywords/pooling","display_name":"Pooling","score":0.5958999991416931},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.46459999680519104},{"id":"https://openalex.org/keywords/directed-graph","display_name":"Directed graph","score":0.4284999966621399},{"id":"https://openalex.org/keywords/mutual-information","display_name":"Mutual information","score":0.4027999937534332},{"id":"https://openalex.org/keywords/schema","display_name":"Schema (genetic algorithms)","score":0.3671000003814697}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7261000275611877},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6644999980926514},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6248000264167786},{"id":"https://openalex.org/C70437156","wikidata":"https://www.wikidata.org/wiki/Q7228652","display_name":"Pooling","level":2,"score":0.5958999991416931},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.574400007724762},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.525600016117096},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.46459999680519104},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.4284999966621399},{"id":"https://openalex.org/C152139883","wikidata":"https://www.wikidata.org/wiki/Q252973","display_name":"Mutual information","level":2,"score":0.4027999937534332},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3946000039577484},{"id":"https://openalex.org/C52146309","wikidata":"https://www.wikidata.org/wiki/Q7431116","display_name":"Schema (genetic algorithms)","level":2,"score":0.3671000003814697},{"id":"https://openalex.org/C179717631","wikidata":"https://www.wikidata.org/wiki/Q2991667","display_name":"Multilayer perceptron","level":3,"score":0.3538999855518341},{"id":"https://openalex.org/C60908668","wikidata":"https://www.wikidata.org/wiki/Q690207","display_name":"Perceptron","level":3,"score":0.3273000121116638},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.31450000405311584},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.31200000643730164},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.28450000286102295},{"id":"https://openalex.org/C158600405","wikidata":"https://www.wikidata.org/wiki/Q5054566","display_name":"Causal inference","level":2,"score":0.27900001406669617},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.2630999982357025},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.26170000433921814},{"id":"https://openalex.org/C111030470","wikidata":"https://www.wikidata.org/wiki/Q1430460","display_name":"Curse of dimensionality","level":2,"score":0.25380000472068787},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.2531000077724457}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.eswa.2025.129827","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2025.129827","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G4416949249","display_name":null,"funder_award_id":"61741115","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4755625756","display_name":null,"funder_award_id":"2017-ZJ-953Q","funder_id":"https://openalex.org/F4320327085","funder_display_name":"Qinghai Provincial Department of Science and Technology"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320327085","display_name":"Qinghai Provincial Department of Science and Technology","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W2070822442","https://openalex.org/W2076513103","https://openalex.org/W2109384743","https://openalex.org/W2110940238","https://openalex.org/W2118283003","https://openalex.org/W2126750365","https://openalex.org/W2140258573","https://openalex.org/W2175370850","https://openalex.org/W2465917013","https://openalex.org/W2511896561","https://openalex.org/W2520902279","https://openalex.org/W2626990934","https://openalex.org/W2782454362","https://openalex.org/W2789254933","https://openalex.org/W2796742697","https://openalex.org/W2900310474","https://openalex.org/W2900569176","https://openalex.org/W2901292166","https://openalex.org/W2902990089","https://openalex.org/W2911495555","https://openalex.org/W2914059076","https://openalex.org/W2952535935","https://openalex.org/W2964315448","https://openalex.org/W2997831639","https://openalex.org/W3033821083","https://openalex.org/W3045910546","https://openalex.org/W3093153369","https://openalex.org/W3095716988","https://openalex.org/W3101369110","https://openalex.org/W3138479716","https://openalex.org/W3186348651","https://openalex.org/W3193795275","https://openalex.org/W3205207815","https://openalex.org/W4223557148","https://openalex.org/W4225278475","https://openalex.org/W4290930137","https://openalex.org/W4366685166","https://openalex.org/W4382022265","https://openalex.org/W4391111375","https://openalex.org/W4391609537","https://openalex.org/W4394764901","https://openalex.org/W4401200719","https://openalex.org/W4405459861","https://openalex.org/W4407392032"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":5}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
