{"id":"https://openalex.org/W4406974835","doi":"https://doi.org/10.1016/j.envsoft.2025.106352","title":"Amadeus: Accessing and analyzing large scale environmental data in R","display_name":"Amadeus: Accessing and analyzing large scale environmental data in R","publication_year":2025,"publication_date":"2025-01-30","ids":{"openalex":"https://openalex.org/W4406974835","doi":"https://doi.org/10.1016/j.envsoft.2025.106352"},"language":"en","primary_location":{"id":"doi:10.1016/j.envsoft.2025.106352","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2025.106352","pdf_url":null,"source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.envsoft.2025.106352","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5027210096","display_name":"Mitchell Manware","orcid":"https://orcid.org/0009-0003-6440-6106"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mitchell Manware","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061282213","display_name":"Insang Song","orcid":"https://orcid.org/0000-0001-8732-3256"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]}],"countries":["KR"],"is_corresponding":false,"raw_author_name":"Insang Song","raw_affiliation_strings":["Department of Geography and 4-Plus Innovations for the Future Land Space, Seoul National University, Gwanak-gu, Seoul, 08826, Republic of Korea"],"affiliations":[{"raw_affiliation_string":"Department of Geography and 4-Plus Innovations for the Future Land Space, Seoul National University, Gwanak-gu, Seoul, 08826, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057190197","display_name":"Eva Marqu\u00e8s","orcid":"https://orcid.org/0000-0001-9817-6546"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Eva S. Marques","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Division of Intramural Research, Biostatistics and Computational Biology Branch, Durham, NC, 27713, USA","National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Intramural Research, Biostatistics and Computational Biology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]},{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Mariana Alifa Kassien","orcid":null},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mariana Alifa Kassien","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064483656","display_name":"Lara P. Clark","orcid":"https://orcid.org/0000-0001-6940-5442"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lara P. Clark","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5053151079","display_name":"Kyle P. Messier","orcid":"https://orcid.org/0000-0001-9508-9623"},"institutions":[{"id":"https://openalex.org/I4210095140","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I4210095140"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kyle P. Messier","raw_affiliation_strings":["National Institute of Environmental Health Sciences, Division of Intramural Research, Biostatistics and Computational Biology Branch, Durham, NC, 27713, USA","National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA"],"affiliations":[{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Intramural Research, Biostatistics and Computational Biology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]},{"raw_affiliation_string":"National Institute of Environmental Health Sciences, Division of Translational Toxicology, Predictive Toxicology Branch, Durham, NC, 27713, USA","institution_ids":["https://openalex.org/I4210095140"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5053151079"],"corresponding_institution_ids":["https://openalex.org/I4210095140"],"apc_list":{"value":3400,"currency":"USD","value_usd":3400},"apc_paid":{"value":3400,"currency":"USD","value_usd":3400},"fwci":2.2283,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.87256684,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"186","issue":null,"first_page":"106352","last_page":"106352"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.9945999979972839,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11490","display_name":"Hydrological Forecasting Using AI","score":0.9365000128746033,"subfield":{"id":"https://openalex.org/subfields/2305","display_name":"Environmental Engineering"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10330","display_name":"Hydrology and Watershed Management Studies","score":0.9244999885559082,"subfield":{"id":"https://openalex.org/subfields/2312","display_name":"Water Science and Technology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.6791250705718994},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4462830722332001},{"id":"https://openalex.org/keywords/environmental-science","display_name":"Environmental science","score":0.33956366777420044},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.30193400382995605},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.22488835453987122}],"concepts":[{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.6791250705718994},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4462830722332001},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.33956366777420044},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.30193400382995605},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.22488835453987122}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.envsoft.2025.106352","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2025.106352","pdf_url":null,"source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.envsoft.2025.106352","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2025.106352","pdf_url":null,"source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","display_name":"Climate action","score":0.550000011920929}],"awards":[{"id":"https://openalex.org/G8581748562","display_name":null,"funder_award_id":"ZIA ES103368-02","funder_id":"https://openalex.org/F4320337361","funder_display_name":"National Institute of Environmental Health Sciences"}],"funders":[{"id":"https://openalex.org/F4320337361","display_name":"National Institute of Environmental Health Sciences","ror":"https://ror.org/00j4k1h63"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":63,"referenced_works":["https://openalex.org/W1546972613","https://openalex.org/W1568201516","https://openalex.org/W1606754933","https://openalex.org/W1976496407","https://openalex.org/W1995047010","https://openalex.org/W2011909531","https://openalex.org/W2027470589","https://openalex.org/W2075472040","https://openalex.org/W2088081764","https://openalex.org/W2120894392","https://openalex.org/W2138102892","https://openalex.org/W2302501749","https://openalex.org/W2509286643","https://openalex.org/W2587979114","https://openalex.org/W2609090635","https://openalex.org/W2611772571","https://openalex.org/W2619107299","https://openalex.org/W2767635462","https://openalex.org/W2784327149","https://openalex.org/W2792442798","https://openalex.org/W2804233742","https://openalex.org/W2898962279","https://openalex.org/W2910500353","https://openalex.org/W2912430686","https://openalex.org/W2978869106","https://openalex.org/W3024763785","https://openalex.org/W3072681182","https://openalex.org/W3112533728","https://openalex.org/W3133613421","https://openalex.org/W3138787553","https://openalex.org/W3175484896","https://openalex.org/W3207556138","https://openalex.org/W4220779024","https://openalex.org/W4221085688","https://openalex.org/W4225000460","https://openalex.org/W4242053123","https://openalex.org/W4286504533","https://openalex.org/W4288436425","https://openalex.org/W4311419510","https://openalex.org/W4315631654","https://openalex.org/W4361200200","https://openalex.org/W4368341814","https://openalex.org/W4391785375","https://openalex.org/W4399553001","https://openalex.org/W4399570717","https://openalex.org/W4399573548","https://openalex.org/W4399573751","https://openalex.org/W4399578779","https://openalex.org/W4399582508","https://openalex.org/W4399583898","https://openalex.org/W4399637217","https://openalex.org/W4399637459","https://openalex.org/W4399639834","https://openalex.org/W4399647817","https://openalex.org/W4399647823","https://openalex.org/W4399648483","https://openalex.org/W4399648534","https://openalex.org/W4399650423","https://openalex.org/W6733757364","https://openalex.org/W6802931581","https://openalex.org/W6852373202","https://openalex.org/W6869323379","https://openalex.org/W6910912078"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W4391913857","https://openalex.org/W2358668433","https://openalex.org/W4396701345","https://openalex.org/W2376932109","https://openalex.org/W2001405890","https://openalex.org/W4396696052"],"abstract_inverted_index":{"Environmental":[0],"health":[1,16,31],"research":[2,32],"increasingly":[3],"uses":[4],"large":[5,55],"scale":[6,56],"spatial":[7,73,100],"data":[8,74,92,101,122,131,178,185],"to":[9,48,51,66,143],"understand":[10],"relationships":[11],"between":[12],"environmental":[13,30,57,91,121,141,168],"factors":[14],"and":[15,20,27,52,84,104,111,124,133,145,158,165,176,180,196],"outcomes.":[17],"Data":[18],"access":[19,50,132],"analysis":[21],"tools":[22],"which":[23,81],"improve":[24,49],"the":[25,37,41,61,68,118,163],"timeliness":[26],"reproducibility":[28,119],"of":[29,120,167],"are":[33,194],"crucial":[34],"for":[35,44,71,151],"advancing":[36],"field.":[38],"We":[39],"present":[40],"amadeus":[42,64,116,127,149],"package":[43,128,150],"R,":[45],"a":[46],"tool":[47],"utility":[53],"with":[54,98,113,198],"data,":[58],"primarily":[59],"covering":[60],"United":[62],"States.":[63],"aims":[65],"reduce":[67],"learning":[69],"curve":[70],"conducting":[72],"analyses":[75],"in":[76,140,171],"R":[77,102,152],"by":[78],"providing":[79],"functions":[80,95,157],"download,":[82],"process,":[83],"calculate":[85],"covariates":[86],"from":[87,137],"various":[88],"publicly":[89],"available":[90,170],"sources.":[93],"The":[94,126,148],"promote":[96],"interoperability":[97],"popular":[99],"packages":[103],"integration":[105,134],"across":[106,189],"other":[107],"programming":[108,190],"languages.":[109,191],"Created":[110],"maintained":[112,197],"test-driven":[114,199],"development,":[115],"supports":[117],"acquisition":[123,179],"preparation.":[125],"has":[129],"diverse":[130],"applications,":[135],"ranging":[136],"health-oriented":[138],"studies":[139],"epidemiology":[142],"ecology":[144],"climatology.":[146],"\u2022":[147,160,173,183,192],"is":[153],"presented,":[154],"describing":[155],"its":[156],"workflow.":[159],"Amadeus":[161],"expands":[162],"variety":[164],"depth":[166],"datasets":[169],"R.":[172],"Repeatable,":[174],"reproducible,":[175],"reliable":[177],"preparation":[181],"functions.":[182],"Downloaded":[184],"can":[186],"be":[187],"used":[188],"Functions":[193],"built":[195],"development.":[200]},"counts_by_year":[],"updated_date":"2026-04-21T08:09:41.155169","created_date":"2025-10-10T00:00:00"}
