{"id":"https://openalex.org/W4410855984","doi":"https://doi.org/10.1016/j.ecoinf.2025.103200","title":"SeagrassFinder: Deep learning for eelgrass detection and coverage estimation in the wild","display_name":"SeagrassFinder: Deep learning for eelgrass detection and coverage estimation in the wild","publication_year":2025,"publication_date":"2025-05-29","ids":{"openalex":"https://openalex.org/W4410855984","doi":"https://doi.org/10.1016/j.ecoinf.2025.103200"},"language":"en","primary_location":{"id":"doi:10.1016/j.ecoinf.2025.103200","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2025.103200","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.ecoinf.2025.103200","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5115617310","display_name":"Jannik Els\u00e4\u00dfer","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159723","display_name":"DHI","ror":"https://ror.org/05jmnvy38","country_code":"DK","type":"other","lineage":["https://openalex.org/I4210159723"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Jannik Els\u00e4\u00dfer","raw_affiliation_strings":["DHI A/S, Agern Alle 5, H\u00f8rsholm, 2970, Denmark"],"raw_orcid":"https://orcid.org/0009-0002-2193-4147","affiliations":[{"raw_affiliation_string":"DHI A/S, Agern Alle 5, H\u00f8rsholm, 2970, Denmark","institution_ids":["https://openalex.org/I4210159723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5115617311","display_name":"Laura Weihl","orcid":"https://orcid.org/0000-0002-8916-3468"},"institutions":[{"id":"https://openalex.org/I83467386","display_name":"IT University of Copenhagen","ror":"https://ror.org/02309jg23","country_code":"DK","type":"education","lineage":["https://openalex.org/I83467386"]}],"countries":["DK"],"is_corresponding":true,"raw_author_name":"Laura Weihl","raw_affiliation_strings":["Computer Science Department, IT University of Copenhagen, Rued Langaards Vej 7, Copenhagen, 2300, Denmark"],"raw_orcid":"https://orcid.org/0000-0002-8916-3468","affiliations":[{"raw_affiliation_string":"Computer Science Department, IT University of Copenhagen, Rued Langaards Vej 7, Copenhagen, 2300, Denmark","institution_ids":["https://openalex.org/I83467386"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031371103","display_name":"Veronika Cheplygina","orcid":"https://orcid.org/0000-0003-0176-9324"},"institutions":[{"id":"https://openalex.org/I83467386","display_name":"IT University of Copenhagen","ror":"https://ror.org/02309jg23","country_code":"DK","type":"education","lineage":["https://openalex.org/I83467386"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Veronika Cheplygina","raw_affiliation_strings":["Computer Science Department, IT University of Copenhagen, Rued Langaards Vej 7, Copenhagen, 2300, Denmark"],"raw_orcid":"https://orcid.org/0000-0003-0176-9324","affiliations":[{"raw_affiliation_string":"Computer Science Department, IT University of Copenhagen, Rued Langaards Vej 7, Copenhagen, 2300, Denmark","institution_ids":["https://openalex.org/I83467386"]}]},{"author_position":"last","author":{"id":null,"display_name":"Lisbeth Tangaa Nielsen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210159723","display_name":"DHI","ror":"https://ror.org/05jmnvy38","country_code":"DK","type":"other","lineage":["https://openalex.org/I4210159723"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Lisbeth Tangaa Nielsen","raw_affiliation_strings":["DHI A/S, Agern Alle 5, H\u00f8rsholm, 2970, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"DHI A/S, Agern Alle 5, H\u00f8rsholm, 2970, Denmark","institution_ids":["https://openalex.org/I4210159723"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5115617311"],"corresponding_institution_ids":["https://openalex.org/I83467386"],"apc_list":{"value":2510,"currency":"USD","value_usd":2510},"apc_paid":{"value":2510,"currency":"USD","value_usd":2510},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.1285758,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"90","issue":null,"first_page":"103200","last_page":"103200"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10643","display_name":"Marine and coastal plant biology","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10643","display_name":"Marine and coastal plant biology","score":0.9941999912261963,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10659","display_name":"Marine animal studies overview","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10341","display_name":"Coral and Marine Ecosystems Studies","score":0.9700000286102295,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/estimation","display_name":"Estimation","score":0.5429752469062805},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.5113465189933777},{"id":"https://openalex.org/keywords/zostera-marina","display_name":"Zostera marina","score":0.5111110806465149},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5110021829605103},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.45878368616104126},{"id":"https://openalex.org/keywords/environmental-science","display_name":"Environmental science","score":0.39929455518722534},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3293580412864685},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.31725460290908813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26661303639411926},{"id":"https://openalex.org/keywords/ecosystem","display_name":"Ecosystem","score":0.193156898021698},{"id":"https://openalex.org/keywords/seagrass","display_name":"Seagrass","score":0.18368342518806458},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10774990916252136}],"concepts":[{"id":"https://openalex.org/C96250715","wikidata":"https://www.wikidata.org/wiki/Q965330","display_name":"Estimation","level":2,"score":0.5429752469062805},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.5113465189933777},{"id":"https://openalex.org/C2780695071","wikidata":"https://www.wikidata.org/wiki/Q21128","display_name":"Zostera marina","level":4,"score":0.5111110806465149},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5110021829605103},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45878368616104126},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.39929455518722534},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3293580412864685},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.31725460290908813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26661303639411926},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.193156898021698},{"id":"https://openalex.org/C2777400808","wikidata":"https://www.wikidata.org/wiki/Q646660","display_name":"Seagrass","level":3,"score":0.18368342518806458},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10774990916252136},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.ecoinf.2025.103200","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2025.103200","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"},{"id":"pmh:oai:pure.atira.dk:openaire/49c93299-9e78-4314-9578-1f4bee9e554c","is_oa":false,"landing_page_url":"https://pure.itu.dk/portal/da/publications/49c93299-9e78-4314-9578-1f4bee9e554c","pdf_url":null,"source":{"id":"https://openalex.org/S4377196680","display_name":"IT University Of Copenhagen (IT University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I83467386","host_organization_name":"IT University of Copenhagen","host_organization_lineage":["https://openalex.org/I83467386"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Els\u00e4\u00dfer, J, Weihl, L, Cheplygina, V & Nielsen, L T 2025, 'SeagrassFinder: Deep learning for eelgrass detection and coverage estimation in the wild', Ecological Informatics, vol. 90. https://doi.org/10.1016/j.ecoinf.2025.103200","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:2e36a18ea7bc4ae4936dae3f6e742309","is_oa":true,"landing_page_url":"https://doaj.org/article/2e36a18ea7bc4ae4936dae3f6e742309","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ecological Informatics, Vol 90, Iss , Pp 103200- (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.ecoinf.2025.103200","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2025.103200","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/14","score":0.7300000190734863,"display_name":"Life below water"}],"awards":[{"id":"https://openalex.org/G645568269","display_name":null,"funder_award_id":"956200","funder_id":"https://openalex.org/F4320335254","funder_display_name":"Horizon 2020"}],"funders":[{"id":"https://openalex.org/F4320332999","display_name":"Horizon 2020 Framework Programme","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335254","display_name":"Horizon 2020","ror":null},{"id":"https://openalex.org/F4320338337","display_name":"H2020 Marie Sk\u0142odowska-Curie Actions","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":57,"referenced_works":["https://openalex.org/W1966845100","https://openalex.org/W2000954259","https://openalex.org/W2013154512","https://openalex.org/W2021900041","https://openalex.org/W2040315042","https://openalex.org/W2094785904","https://openalex.org/W2109252556","https://openalex.org/W2114056667","https://openalex.org/W2117539524","https://openalex.org/W2163605009","https://openalex.org/W2164777277","https://openalex.org/W2183341477","https://openalex.org/W2194775991","https://openalex.org/W2263509631","https://openalex.org/W2804020856","https://openalex.org/W2876772800","https://openalex.org/W2900284876","https://openalex.org/W2963446712","https://openalex.org/W2974098375","https://openalex.org/W3000173771","https://openalex.org/W3011514287","https://openalex.org/W3029888544","https://openalex.org/W3094502228","https://openalex.org/W3096258313","https://openalex.org/W3110224449","https://openalex.org/W3118683675","https://openalex.org/W3171662571","https://openalex.org/W4223899585","https://openalex.org/W4237947769","https://openalex.org/W4288560826","https://openalex.org/W4295312788","https://openalex.org/W4300851647","https://openalex.org/W4321277297","https://openalex.org/W4323664199","https://openalex.org/W4376551210","https://openalex.org/W4380926368","https://openalex.org/W4391756091","https://openalex.org/W4393115925","https://openalex.org/W4394597531","https://openalex.org/W4402039388","https://openalex.org/W4402499135","https://openalex.org/W4407835198","https://openalex.org/W6650820226","https://openalex.org/W6684191040","https://openalex.org/W6754002923","https://openalex.org/W6757053570","https://openalex.org/W6766978945","https://openalex.org/W6767915748","https://openalex.org/W6768830447","https://openalex.org/W6770836944","https://openalex.org/W6778293582","https://openalex.org/W6782727929","https://openalex.org/W6786877183","https://openalex.org/W6788135285","https://openalex.org/W6805154870","https://openalex.org/W6862092458","https://openalex.org/W6877012587"],"related_works":["https://openalex.org/W2009178668","https://openalex.org/W2050322358","https://openalex.org/W2024443772","https://openalex.org/W2015600353","https://openalex.org/W2011778225","https://openalex.org/W2062318122","https://openalex.org/W2062051875","https://openalex.org/W2047690784","https://openalex.org/W4239762944","https://openalex.org/W4380075502"],"abstract_inverted_index":{"Seagrass":[0],"meadows":[1],"play":[2],"a":[3,80,162,322],"crucial":[4,224],"role":[5],"in":[6,133,215,270],"marine":[7,255,326],"ecosystems,":[8],"providing":[9],"benefits":[10],"such":[11],"as":[12,232,321],"carbon":[13],"sequestration,":[14],"water":[15],"quality":[16],"improvement,":[17],"and":[18,24,34,53,71,89,100,112,182,187,229,257,332],"habitat":[19],"provision.":[20],"Monitoring":[21],"the":[22,38,58,66,104,110,143,155,195,205,244,252],"distribution":[23],"abundance":[25],"of":[26,42,60,68,83,106,114,149,198,201,207,237,254,307,310],"seagrass":[27,49,69,115,167,213,267,296],"is":[28,223],"essential":[29],"for":[30,103,165,185,194,225,295,325],"environmental":[31,226,258,274,314,334],"impact":[32,227,275,315],"assessments":[33,228],"conservation":[35],"efforts.":[36],"However,":[37],"current":[39,218],"manual":[40,180,219,280],"methods":[41],"analyzing":[43],"underwater":[44,75,87,150,271,287],"video":[45,76,170,202],"data":[46,302,311],"to":[47,64,217,251],"assess":[48],"coverage":[50,72,168],"are":[51,234],"time-consuming":[52],"subjective.":[54],"This":[55,221,241],"work":[56],"explores":[57],"use":[59],"deep":[61,93,123,247,292],"learning":[62,94,124,248,284,293],"models":[63],"automate":[65,266],"process":[67],"detection":[70,269,297],"estimation":[73],"from":[74,169,273,313],"data.":[77],"We":[78],"create":[79],"new":[81],"dataset":[82],"over":[84],"8,300":[85],"annotated":[86],"images,":[88],"subsequently":[90],"evaluate":[91],"several":[92],"architectures,":[95],"including":[96],"ResNet,":[97],"InceptionNetV3,":[98],"DenseNet,":[99],"Vision":[101,127],"Transformer":[102],"task":[105],"binary":[107],"classification":[108],"on":[109,142,212,279],"absence":[111],"presence":[113,268],"by":[116],"transfer":[117],"learning.":[118],"The":[119,147,190],"results":[120,175],"demonstrate":[121],"that":[122,176,246],"models,":[125],"particularly":[126],"Transformers,":[128],"can":[129,249,264],"achieve":[130],"high":[131],"performance":[132],"predicting":[134],"eelgrass":[135],"presence,":[136],"with":[137,178,286],"AUROC":[138],"scores":[139],"exceeding":[140],"0.95":[141],"final":[144],"test":[145],"dataset.":[146],"application":[148],"image":[151,288],"enhancement":[152,289],"further":[153],"improved":[154],"models\u2019":[156],"prediction":[157],"capabilities.":[158],"Furthermore,":[159],"we":[160],"introduce":[161],"novel":[163],"approach":[164],"estimating":[166],"data,":[171,203],"showing":[172],"promising":[173],"preliminary":[174],"align":[177],"expert":[179],"labels,":[181],"indicating":[183],"potential":[184],"consistent":[186],"scalable":[188],"monitoring.":[189,259,335],"proposed":[191],"methodology":[192,319],"allows":[193],"efficient":[196],"processing":[197],"large":[199,308],"volumes":[200],"enabling":[204,328],"acquisition":[206],"much":[208],"more":[209,329],"detailed":[210],"information":[211,222],"distributions":[214],"comparison":[216],"methods.":[220],"monitoring":[230],"programs,":[231],"seagrasses":[233],"important":[235],"indicators":[236],"coastal":[238],"ecosystem":[239],"health.":[240],"project":[242],"demonstrates":[243],"value":[245],"bring":[250],"field":[253],"ecology":[256],"\u2022":[260,282,299,317],"Deep":[261],"neural":[262],"networks":[263],"effectively":[265],"videos":[272],"assessments,":[276],"reducing":[277],"reliance":[278],"annotations.":[281],"Transfer":[283],"combined":[285],"techniques":[290],"improves":[291],"capabilities":[294],"tasks.":[298],"Our":[300,318],"custom":[301],"annotation":[303],"platforms":[304],"support":[305],"labeling":[306],"amounts":[309],"collected":[312],"assessments.":[316],"serves":[320],"supportive":[323],"tool":[324],"biologists,":[327],"consistent,":[330],"scalable,":[331],"objective":[333]},"counts_by_year":[],"updated_date":"2026-01-20T17:24:06.736184","created_date":"2025-10-10T00:00:00"}
