{"id":"https://openalex.org/W2014264886","doi":"https://doi.org/10.1016/j.datak.2010.07.003","title":"BioDB: An ontology-enhanced information system for heterogeneous biological information","display_name":"BioDB: An ontology-enhanced information system for heterogeneous biological information","publication_year":2010,"publication_date":"2010-07-21","ids":{"openalex":"https://openalex.org/W2014264886","doi":"https://doi.org/10.1016/j.datak.2010.07.003","mag":"2014264886"},"language":"en","primary_location":{"id":"doi:10.1016/j.datak.2010.07.003","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.datak.2010.07.003","pdf_url":null,"source":{"id":"https://openalex.org/S136993123","display_name":"Data & Knowledge Engineering","issn_l":"0169-023X","issn":["0169-023X","1872-6933"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data &amp; Knowledge Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5057846313","display_name":"Amarnath Gupta","orcid":"https://orcid.org/0000-0003-0897-120X"},"institutions":[{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Amarnath Gupta","raw_affiliation_strings":["San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108467458","display_name":"Christopher Condit","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher Condit","raw_affiliation_strings":["San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5111427362","display_name":"Xufei Qian","orcid":null},"institutions":[{"id":"https://openalex.org/I181653535","display_name":"San Diego Supercomputer Center","ror":"https://ror.org/04mg3nk07","country_code":"US","type":"facility","lineage":["https://openalex.org/I181653535","https://openalex.org/I36258959"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xufei Qian","raw_affiliation_strings":["San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA"],"affiliations":[{"raw_affiliation_string":"San Diego Supercomputer Center, University of California San Diego, La Jolla, CA 92093, USA","institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5057846313"],"corresponding_institution_ids":["https://openalex.org/I181653535","https://openalex.org/I36258959"],"apc_list":{"value":2590,"currency":"USD","value_usd":2590},"apc_paid":null,"fwci":0.5398,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.6545469,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"69","issue":"11","first_page":"1084","last_page":"1102"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9772999882698059,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8265178203582764},{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7799190878868103},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.6610445380210876},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6525204181671143},{"id":"https://openalex.org/keywords/xml","display_name":"XML","score":0.520523190498352},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.4869057238101959},{"id":"https://openalex.org/keywords/suggested-upper-merged-ontology","display_name":"Suggested Upper Merged Ontology","score":0.48026323318481445},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.47925829887390137},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.4719228744506836},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.4598577618598938},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.4587003290653229},{"id":"https://openalex.org/keywords/data-model","display_name":"Data model (GIS)","score":0.4259260892868042},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.4232971668243408},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3637060523033142},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.21377089619636536},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.19408762454986572},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.09593981504440308}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8265178203582764},{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7799190878868103},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.6610445380210876},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6525204181671143},{"id":"https://openalex.org/C8797682","wikidata":"https://www.wikidata.org/wiki/Q2115","display_name":"XML","level":2,"score":0.520523190498352},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.4869057238101959},{"id":"https://openalex.org/C50971890","wikidata":"https://www.wikidata.org/wiki/Q7635093","display_name":"Suggested Upper Merged Ontology","level":4,"score":0.48026323318481445},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.47925829887390137},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.4719228744506836},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.4598577618598938},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.4587003290653229},{"id":"https://openalex.org/C100463513","wikidata":"https://www.wikidata.org/wiki/Q5227322","display_name":"Data model (GIS)","level":2,"score":0.4259260892868042},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.4232971668243408},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3637060523033142},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.21377089619636536},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.19408762454986572},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.09593981504440308},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.datak.2010.07.003","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.datak.2010.07.003","pdf_url":null,"source":{"id":"https://openalex.org/S136993123","display_name":"Data & Knowledge Engineering","issn_l":"0169-023X","issn":["0169-023X","1872-6933"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data &amp; Knowledge Engineering","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":80,"referenced_works":["https://openalex.org/W182745451","https://openalex.org/W197564590","https://openalex.org/W279726064","https://openalex.org/W1523873824","https://openalex.org/W1547026536","https://openalex.org/W1552498712","https://openalex.org/W1592753763","https://openalex.org/W1598529586","https://openalex.org/W1608355320","https://openalex.org/W1690273063","https://openalex.org/W1868560016","https://openalex.org/W1916576906","https://openalex.org/W1966490333","https://openalex.org/W1976176703","https://openalex.org/W1997219719","https://openalex.org/W2004884668","https://openalex.org/W2008742021","https://openalex.org/W2011094172","https://openalex.org/W2022806657","https://openalex.org/W2057536625","https://openalex.org/W2058329128","https://openalex.org/W2058660484","https://openalex.org/W2075194908","https://openalex.org/W2076826881","https://openalex.org/W2080464727","https://openalex.org/W2093410900","https://openalex.org/W2095734150","https://openalex.org/W2098388305","https://openalex.org/W2098618539","https://openalex.org/W2102003617","https://openalex.org/W2103129584","https://openalex.org/W2103260426","https://openalex.org/W2104511295","https://openalex.org/W2105303457","https://openalex.org/W2112983405","https://openalex.org/W2116391761","https://openalex.org/W2118302148","https://openalex.org/W2119647569","https://openalex.org/W2125685488","https://openalex.org/W2126249038","https://openalex.org/W2131165032","https://openalex.org/W2132731949","https://openalex.org/W2134899277","https://openalex.org/W2140613126","https://openalex.org/W2141449497","https://openalex.org/W2148720611","https://openalex.org/W2148942721","https://openalex.org/W2151397621","https://openalex.org/W2152844712","https://openalex.org/W2153774158","https://openalex.org/W2170016254","https://openalex.org/W2171874178","https://openalex.org/W2188953292","https://openalex.org/W2292481316","https://openalex.org/W2610194067","https://openalex.org/W4229943126","https://openalex.org/W4285719527","https://openalex.org/W6610202655","https://openalex.org/W6631492289","https://openalex.org/W6632786059","https://openalex.org/W6633030633","https://openalex.org/W6635296913","https://openalex.org/W6636496860","https://openalex.org/W6637434050","https://openalex.org/W6652624943","https://openalex.org/W6656101550","https://openalex.org/W6664906360","https://openalex.org/W6674293783","https://openalex.org/W6675115018","https://openalex.org/W6676935919","https://openalex.org/W6677261630","https://openalex.org/W6678955247","https://openalex.org/W6680805174","https://openalex.org/W6681185307","https://openalex.org/W6681919983","https://openalex.org/W6682097395","https://openalex.org/W6682289540","https://openalex.org/W6682604482","https://openalex.org/W6685165322","https://openalex.org/W7011400972"],"related_works":["https://openalex.org/W2015306306","https://openalex.org/W2028429940","https://openalex.org/W2732632690","https://openalex.org/W2363188691","https://openalex.org/W2765352056","https://openalex.org/W2464347310","https://openalex.org/W2223008607","https://openalex.org/W2150375996","https://openalex.org/W2608149786","https://openalex.org/W2375862234"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2025-11-06T03:46:38.306776","created_date":"2025-10-10T00:00:00"}
