{"id":"https://openalex.org/W4397001187","doi":"https://doi.org/10.1016/j.compbiolchem.2024.108098","title":"FusPB-ESM2: Fusion model of ProtBERT and ESM-2 for cell-penetrating peptide prediction","display_name":"FusPB-ESM2: Fusion model of ProtBERT and ESM-2 for cell-penetrating peptide prediction","publication_year":2024,"publication_date":"2024-05-17","ids":{"openalex":"https://openalex.org/W4397001187","doi":"https://doi.org/10.1016/j.compbiolchem.2024.108098","pmid":"https://pubmed.ncbi.nlm.nih.gov/38820799"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiolchem.2024.108098","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2024.108098","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5042121843","display_name":"Fan Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I130541836","display_name":"Beijing Institute of Petrochemical Technology","ror":"https://ror.org/025s55q11","country_code":"CN","type":"education","lineage":["https://openalex.org/I130541836"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Fan Zhang","raw_affiliation_strings":["Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","Beijing Institute of Petrochemical Technology, Beijing 102617, China"],"raw_orcid":"https://orcid.org/0000-0001-9315-4372","affiliations":[{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","institution_ids":["https://openalex.org/I130541836"]},{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology, Beijing 102617, China","institution_ids":["https://openalex.org/I130541836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101903081","display_name":"Jinfeng Li","orcid":"https://orcid.org/0000-0003-4115-1369"},"institutions":[{"id":"https://openalex.org/I130541836","display_name":"Beijing Institute of Petrochemical Technology","ror":"https://ror.org/025s55q11","country_code":"CN","type":"education","lineage":["https://openalex.org/I130541836"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jinfeng Li","raw_affiliation_strings":["Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","Beijing Institute of Petrochemical Technology, Beijing 102617, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","institution_ids":["https://openalex.org/I130541836"]},{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology, Beijing 102617, China","institution_ids":["https://openalex.org/I130541836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016353239","display_name":"Zhenguo Wen","orcid":"https://orcid.org/0009-0006-4375-8462"},"institutions":[{"id":"https://openalex.org/I130541836","display_name":"Beijing Institute of Petrochemical Technology","ror":"https://ror.org/025s55q11","country_code":"CN","type":"education","lineage":["https://openalex.org/I130541836"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhenguo Wen","raw_affiliation_strings":["Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","Beijing Institute of Petrochemical Technology, Beijing 102617, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China","institution_ids":["https://openalex.org/I130541836"]},{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology, Beijing 102617, China","institution_ids":["https://openalex.org/I130541836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5004026597","display_name":"Chun Fang","orcid":"https://orcid.org/0000-0002-0161-0412"},"institutions":[{"id":"https://openalex.org/I130541836","display_name":"Beijing Institute of Petrochemical Technology","ror":"https://ror.org/025s55q11","country_code":"CN","type":"education","lineage":["https://openalex.org/I130541836"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chun Fang","raw_affiliation_strings":["Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China. Electronic address: fangchun0409@gmail.com","Beijing Institute of Petrochemical Technology, Beijing 102617, China"],"raw_orcid":"https://orcid.org/0000-0002-0161-0412","affiliations":[{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology,\u00a0Beijing 102617,\u00a0China. Electronic address: fangchun0409@gmail.com","institution_ids":["https://openalex.org/I130541836"]},{"raw_affiliation_string":"Beijing Institute of Petrochemical Technology, Beijing 102617, China","institution_ids":["https://openalex.org/I130541836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5004026597"],"corresponding_institution_ids":["https://openalex.org/I130541836"],"apc_list":{"value":3080,"currency":"USD","value_usd":3080},"apc_paid":null,"fwci":4.8204,"has_fulltext":false,"cited_by_count":31,"citation_normalized_percentile":{"value":0.9627583,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"111","issue":null,"first_page":"108098","last_page":"108098"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/fusion","display_name":"Fusion","score":0.5790982246398926},{"id":"https://openalex.org/keywords/peptide","display_name":"Peptide","score":0.560015082359314},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.47191646695137024},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.46044763922691345},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.41904282569885254},{"id":"https://openalex.org/keywords/biophysics","display_name":"Biophysics","score":0.3471710979938507},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.33466655015945435},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.1968548595905304},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15658262372016907}],"concepts":[{"id":"https://openalex.org/C158525013","wikidata":"https://www.wikidata.org/wiki/Q2593739","display_name":"Fusion","level":2,"score":0.5790982246398926},{"id":"https://openalex.org/C2779281246","wikidata":"https://www.wikidata.org/wiki/Q172847","display_name":"Peptide","level":2,"score":0.560015082359314},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.47191646695137024},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.46044763922691345},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.41904282569885254},{"id":"https://openalex.org/C12554922","wikidata":"https://www.wikidata.org/wiki/Q7100","display_name":"Biophysics","level":1,"score":0.3471710979938507},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.33466655015945435},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.1968548595905304},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15658262372016907},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D057846","descriptor_name":"Cell-Penetrating Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiolchem.2024.108098","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiolchem.2024.108098","pdf_url":null,"source":{"id":"https://openalex.org/S104924063","display_name":"Computational Biology and Chemistry","issn_l":"1476-9271","issn":["1476-9271","1476-928X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Biology and Chemistry","raw_type":"journal-article"},{"id":"pmid:38820799","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/38820799","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational biology and chemistry","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":16,"referenced_works":["https://openalex.org/W1931581539","https://openalex.org/W1985718949","https://openalex.org/W1988115241","https://openalex.org/W2096023347","https://openalex.org/W2102461176","https://openalex.org/W2112796928","https://openalex.org/W2395579298","https://openalex.org/W2801916607","https://openalex.org/W2911964244","https://openalex.org/W2949342052","https://openalex.org/W3104361293","https://openalex.org/W3146944767","https://openalex.org/W3177500196","https://openalex.org/W4225008496","https://openalex.org/W4312113926","https://openalex.org/W4391463579"],"related_works":["https://openalex.org/W1526195401","https://openalex.org/W4313385292","https://openalex.org/W1759461029","https://openalex.org/W3134906029","https://openalex.org/W2099421762","https://openalex.org/W2126989399","https://openalex.org/W2530546662","https://openalex.org/W2372019020","https://openalex.org/W2086851734","https://openalex.org/W2375446917"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":12},{"year":2025,"cited_by_count":16},{"year":2024,"cited_by_count":3}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}
