{"id":"https://openalex.org/W4318956085","doi":"https://doi.org/10.1016/j.asoc.2023.110064","title":"Information entropy-based differential evolution with extremely randomized trees and LightGBM for protein structural class prediction","display_name":"Information entropy-based differential evolution with extremely randomized trees and LightGBM for protein structural class prediction","publication_year":2023,"publication_date":"2023-02-02","ids":{"openalex":"https://openalex.org/W4318956085","doi":"https://doi.org/10.1016/j.asoc.2023.110064"},"language":"en","primary_location":{"id":"doi:10.1016/j.asoc.2023.110064","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.asoc.2023.110064","pdf_url":null,"source":{"id":"https://openalex.org/S140556538","display_name":"Applied Soft Computing","issn_l":"1568-4946","issn":["1568-4946","1872-9681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Soft Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Yu Zhang","orcid":"https://orcid.org/0000-0001-5767-3343"},"institutions":[{"id":"https://openalex.org/I42766147","display_name":"University of Toyama","ror":"https://ror.org/0445phv87","country_code":"JP","type":"education","lineage":["https://openalex.org/I42766147"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5767-3343","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan","institution_ids":["https://openalex.org/I42766147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010245958","display_name":"Shangce Gao","orcid":"https://orcid.org/0000-0001-5042-3261"},"institutions":[{"id":"https://openalex.org/I42766147","display_name":"University of Toyama","ror":"https://ror.org/0445phv87","country_code":"JP","type":"education","lineage":["https://openalex.org/I42766147"]}],"countries":["JP"],"is_corresponding":true,"raw_author_name":"Shangce Gao","raw_affiliation_strings":["Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan"],"raw_orcid":"https://orcid.org/0000-0001-5042-3261","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan","institution_ids":["https://openalex.org/I42766147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114041543","display_name":"Pengxing Cai","orcid":null},"institutions":[{"id":"https://openalex.org/I42766147","display_name":"University of Toyama","ror":"https://ror.org/0445phv87","country_code":"JP","type":"education","lineage":["https://openalex.org/I42766147"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Pengxing Cai","raw_affiliation_strings":["Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan"],"raw_orcid":"https://orcid.org/0000-0002-7965-9646","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan","institution_ids":["https://openalex.org/I42766147"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037203593","display_name":"Zhenyu Lei","orcid":"https://orcid.org/0000-0003-2086-479X"},"institutions":[{"id":"https://openalex.org/I42766147","display_name":"University of Toyama","ror":"https://ror.org/0445phv87","country_code":"JP","type":"education","lineage":["https://openalex.org/I42766147"]}],"countries":["JP"],"is_corresponding":false,"raw_author_name":"Zhenyu Lei","raw_affiliation_strings":["Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan"],"raw_orcid":"https://orcid.org/0000-0003-2086-479X","affiliations":[{"raw_affiliation_string":"Faculty of Engineering, University of Toyama, Toyama-shi, 930-8555, Japan","institution_ids":["https://openalex.org/I42766147"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006282634","display_name":"Yirui Wang","orcid":"https://orcid.org/0000-0001-5767-3343"},"institutions":[{"id":"https://openalex.org/I109935558","display_name":"Ningbo University","ror":"https://ror.org/03et85d35","country_code":"CN","type":"education","lineage":["https://openalex.org/I109935558"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yirui Wang","raw_affiliation_strings":["Faculty of Electrical Engineering and Computer Science, Ningbo University, Zhejiang 315211, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Electrical Engineering and Computer Science, Ningbo University, Zhejiang 315211, China","institution_ids":["https://openalex.org/I109935558"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5006282634","https://openalex.org/A5010245958"],"corresponding_institution_ids":["https://openalex.org/I109935558","https://openalex.org/I42766147"],"apc_list":{"value":3350,"currency":"USD","value_usd":3350},"apc_paid":null,"fwci":4.8588,"has_fulltext":false,"cited_by_count":53,"citation_normalized_percentile":{"value":0.96473207,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":100},"biblio":{"volume":"136","issue":null,"first_page":"110064","last_page":"110064"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-tertiary-structure","display_name":"Protein tertiary structure","score":0.775315523147583},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6419506072998047},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.57319575548172},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5519437789916992},{"id":"https://openalex.org/keywords/feature-selection","display_name":"Feature selection","score":0.49280717968940735},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4894667863845825},{"id":"https://openalex.org/keywords/decision-tree","display_name":"Decision tree","score":0.4837105870246887},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.4826712906360626},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4826677143573761},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.473294198513031},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4696696698665619},{"id":"https://openalex.org/keywords/protein-sequencing","display_name":"Protein sequencing","score":0.43899962306022644},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.4327477812767029},{"id":"https://openalex.org/keywords/differential-evolution","display_name":"Differential evolution","score":0.42498496174812317},{"id":"https://openalex.org/keywords/conformational-entropy","display_name":"Conformational entropy","score":0.4162179231643677},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.17291989922523499},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11525604128837585},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.10025456547737122}],"concepts":[{"id":"https://openalex.org/C75599170","wikidata":"https://www.wikidata.org/wiki/Q898483","display_name":"Protein tertiary structure","level":2,"score":0.775315523147583},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6419506072998047},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.57319575548172},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5519437789916992},{"id":"https://openalex.org/C148483581","wikidata":"https://www.wikidata.org/wiki/Q446488","display_name":"Feature selection","level":2,"score":0.49280717968940735},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4894667863845825},{"id":"https://openalex.org/C84525736","wikidata":"https://www.wikidata.org/wiki/Q831366","display_name":"Decision tree","level":2,"score":0.4837105870246887},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.4826712906360626},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4826677143573761},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.473294198513031},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4696696698665619},{"id":"https://openalex.org/C10010492","wikidata":"https://www.wikidata.org/wiki/Q3142557","display_name":"Protein sequencing","level":4,"score":0.43899962306022644},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.4327477812767029},{"id":"https://openalex.org/C74750220","wikidata":"https://www.wikidata.org/wiki/Q2662197","display_name":"Differential evolution","level":2,"score":0.42498496174812317},{"id":"https://openalex.org/C69308434","wikidata":"https://www.wikidata.org/wiki/Q5160266","display_name":"Conformational entropy","level":3,"score":0.4162179231643677},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.17291989922523499},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11525604128837585},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.10025456547737122},{"id":"https://openalex.org/C32909587","wikidata":"https://www.wikidata.org/wiki/Q11369","display_name":"Molecule","level":2,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.asoc.2023.110064","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.asoc.2023.110064","pdf_url":null,"source":{"id":"https://openalex.org/S140556538","display_name":"Applied Soft Computing","issn_l":"1568-4946","issn":["1568-4946","1872-9681"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Applied Soft Computing","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Peace, Justice and strong institutions","score":0.4699999988079071,"id":"https://metadata.un.org/sdg/16"}],"awards":[{"id":"https://openalex.org/G1461251716","display_name":"Toward next-generation flexible and interpretable deep learning: A novel evolutionary wide dendritic learning","funder_award_id":"23K24899","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G1472198453","display_name":null,"funder_award_id":"JPMJSP2145","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"},{"id":"https://openalex.org/G1866405319","display_name":null,"funder_award_id":"JP22H03643","funder_id":"https://openalex.org/F4320334764","funder_display_name":"Japan Society for the Promotion of Science"},{"id":"https://openalex.org/G678656017","display_name":null,"funder_award_id":"JPMJFS2115","funder_id":"https://openalex.org/F4320334789","funder_display_name":"Japan Science and Technology Agency"}],"funders":[{"id":"https://openalex.org/F4320334764","display_name":"Japan Society for the Promotion of Science","ror":"https://ror.org/00hhkn466"},{"id":"https://openalex.org/F4320334789","display_name":"Japan Science and Technology Agency","ror":"https://ror.org/00097mb19"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":75,"referenced_works":["https://openalex.org/W45836587","https://openalex.org/W98799986","https://openalex.org/W1487346929","https://openalex.org/W1821507858","https://openalex.org/W1978374115","https://openalex.org/W1987474460","https://openalex.org/W1989447327","https://openalex.org/W1990678622","https://openalex.org/W1995379550","https://openalex.org/W1995875735","https://openalex.org/W2017229033","https://openalex.org/W2026395025","https://openalex.org/W2028492942","https://openalex.org/W2029476353","https://openalex.org/W2030793934","https://openalex.org/W2034400748","https://openalex.org/W2042084565","https://openalex.org/W2049934106","https://openalex.org/W2072168663","https://openalex.org/W2072805285","https://openalex.org/W2078697068","https://openalex.org/W2085277871","https://openalex.org/W2087317522","https://openalex.org/W2094279491","https://openalex.org/W2105121970","https://openalex.org/W2105634619","https://openalex.org/W2120026469","https://openalex.org/W2136334040","https://openalex.org/W2141127144","https://openalex.org/W2145957695","https://openalex.org/W2147863530","https://openalex.org/W2158714788","https://openalex.org/W2163449716","https://openalex.org/W2519618428","https://openalex.org/W2762389725","https://openalex.org/W2765937321","https://openalex.org/W2768348081","https://openalex.org/W2790726221","https://openalex.org/W2793168264","https://openalex.org/W2800579824","https://openalex.org/W2801536506","https://openalex.org/W2804822363","https://openalex.org/W2807001312","https://openalex.org/W2811297572","https://openalex.org/W2829536470","https://openalex.org/W2890285536","https://openalex.org/W2890838230","https://openalex.org/W2892187726","https://openalex.org/W2896636431","https://openalex.org/W2928048063","https://openalex.org/W2944108200","https://openalex.org/W2999044305","https://openalex.org/W3008773008","https://openalex.org/W3010776531","https://openalex.org/W3021411957","https://openalex.org/W3095560944","https://openalex.org/W3104621635","https://openalex.org/W3111707114","https://openalex.org/W3129259175","https://openalex.org/W3135387830","https://openalex.org/W3163945882","https://openalex.org/W3179066323","https://openalex.org/W3186179742","https://openalex.org/W3192988454","https://openalex.org/W3210439805","https://openalex.org/W4206026827","https://openalex.org/W4206671026","https://openalex.org/W4221121088","https://openalex.org/W4281742771","https://openalex.org/W4298851888","https://openalex.org/W6677332663","https://openalex.org/W6745609711","https://openalex.org/W6754604825","https://openalex.org/W6792020946","https://openalex.org/W6795155505"],"related_works":["https://openalex.org/W2221737924","https://openalex.org/W1533579197","https://openalex.org/W51493542","https://openalex.org/W4252453648","https://openalex.org/W2915333504","https://openalex.org/W2804736179","https://openalex.org/W2802527233","https://openalex.org/W4206825711","https://openalex.org/W3127664026","https://openalex.org/W1789072987"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":15},{"year":2024,"cited_by_count":29},{"year":2023,"cited_by_count":6}],"updated_date":"2026-08-28T12:50:07.497085","created_date":"2025-10-10T00:00:00"}