{"id":"https://openalex.org/W1968052823","doi":"https://doi.org/10.1016/s1672-0229(08)60037-6","title":"Computational Analysis of Cysteine Proteases (Clan CA, Family C1) of <i>Leishmania Major</i> to Find Potential Epitopic Regions","display_name":"Computational Analysis of Cysteine Proteases (Clan CA, Family C1) of <i>Leishmania Major</i> to Find Potential Epitopic Regions","publication_year":2009,"publication_date":"2009-09-01","ids":{"openalex":"https://openalex.org/W1968052823","doi":"https://doi.org/10.1016/s1672-0229(08)60037-6","mag":"1968052823","pmid":"https://pubmed.ncbi.nlm.nih.gov/19944381"},"language":"en","primary_location":{"id":"doi:10.1016/s1672-0229(08)60037-6","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(08)60037-6","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/s1672-0229(08)60037-6","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5062441541","display_name":"Babak Saffari","orcid":null},"institutions":[{"id":"https://openalex.org/I166459259","display_name":"Shiraz University","ror":"https://ror.org/028qtbk54","country_code":"IR","type":"education","lineage":["https://openalex.org/I166459259"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Babak Saffari","raw_affiliation_strings":["Department of Biology, College of Sciences, Shiraz University , Shiraz , Iran"],"affiliations":[{"raw_affiliation_string":"Department of Biology, College of Sciences, Shiraz University , Shiraz , Iran","institution_ids":["https://openalex.org/I166459259"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082430755","display_name":"Hassan Mohabatkar","orcid":"https://orcid.org/0000-0002-5151-3768"},"institutions":[{"id":"https://openalex.org/I166459259","display_name":"Shiraz University","ror":"https://ror.org/028qtbk54","country_code":"IR","type":"education","lineage":["https://openalex.org/I166459259"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Hassan Mohabatkar","raw_affiliation_strings":["Department of Biology, College of Sciences, Shiraz University , Shiraz , Iran"],"affiliations":[{"raw_affiliation_string":"Department of Biology, College of Sciences, Shiraz University , Shiraz , Iran","institution_ids":["https://openalex.org/I166459259"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5082430755"],"corresponding_institution_ids":["https://openalex.org/I166459259"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":0.1342,"has_fulltext":false,"cited_by_count":11,"citation_normalized_percentile":{"value":0.5244057,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"7","issue":"3","first_page":"87","last_page":"95"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10823","display_name":"Research on Leishmaniasis Studies","score":0.995199978351593,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11016","display_name":"Monoclonal and Polyclonal Antibodies Research","score":0.9280999898910522,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/proteases","display_name":"Proteases","score":0.9120659232139587},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.8536567687988281},{"id":"https://openalex.org/keywords/cysteine","display_name":"Cysteine","score":0.6130838394165039},{"id":"https://openalex.org/keywords/leishmania","display_name":"Leishmania","score":0.5435019731521606},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4747127592563629},{"id":"https://openalex.org/keywords/virology","display_name":"Virology","score":0.4420813024044037},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41981449723243713},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.37845394015312195},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.336844265460968},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.2973822355270386},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2878059148788452},{"id":"https://openalex.org/keywords/parasite-hosting","display_name":"Parasite hosting","score":0.22957772016525269},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.1627756655216217},{"id":"https://openalex.org/keywords/enzyme","display_name":"Enzyme","score":0.09922745823860168}],"concepts":[{"id":"https://openalex.org/C182220744","wikidata":"https://www.wikidata.org/wiki/Q7251226","display_name":"Proteases","level":3,"score":0.9120659232139587},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.8536567687988281},{"id":"https://openalex.org/C2779201268","wikidata":"https://www.wikidata.org/wiki/Q186474","display_name":"Cysteine","level":3,"score":0.6130838394165039},{"id":"https://openalex.org/C2781092759","wikidata":"https://www.wikidata.org/wiki/Q524818","display_name":"Leishmania","level":3,"score":0.5435019731521606},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4747127592563629},{"id":"https://openalex.org/C159047783","wikidata":"https://www.wikidata.org/wiki/Q7215","display_name":"Virology","level":1,"score":0.4420813024044037},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41981449723243713},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.37845394015312195},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.336844265460968},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.2973822355270386},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2878059148788452},{"id":"https://openalex.org/C71928629","wikidata":"https://www.wikidata.org/wiki/Q804206","display_name":"Parasite hosting","level":2,"score":0.22957772016525269},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.1627756655216217},{"id":"https://openalex.org/C181199279","wikidata":"https://www.wikidata.org/wiki/Q8047","display_name":"Enzyme","level":2,"score":0.09922745823860168},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010446","descriptor_name":"Peptide Fragments","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016773","descriptor_name":"Leishmaniasis, Cutaneous","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016773","descriptor_name":"Leishmaniasis, Cutaneous","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D016773","descriptor_name":"Leishmaniasis, Cutaneous","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018320","descriptor_name":"Leishmania major","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018320","descriptor_name":"Leishmania major","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018320","descriptor_name":"Leishmania major","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057056","descriptor_name":"Cysteine Proteases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057056","descriptor_name":"Cysteine Proteases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D057056","descriptor_name":"Cysteine Proteases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/s1672-0229(08)60037-6","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(08)60037-6","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:19944381","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/19944381","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4016587","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5054412","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/s1672-0229(08)60037-6","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(08)60037-6","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6100000143051147}],"awards":[{"id":"https://openalex.org/G6433114218","display_name":null,"funder_award_id":"88-GR-SC-47","funder_id":"https://openalex.org/F4320323101","funder_display_name":"Shiraz University"}],"funders":[{"id":"https://openalex.org/F4320323101","display_name":"Shiraz University","ror":"https://ror.org/028qtbk54"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":56,"referenced_works":["https://openalex.org/W67744072","https://openalex.org/W1483247593","https://openalex.org/W1526839960","https://openalex.org/W1528315146","https://openalex.org/W1965582988","https://openalex.org/W1993568862","https://openalex.org/W1999264959","https://openalex.org/W2002692958","https://openalex.org/W2010248570","https://openalex.org/W2011770835","https://openalex.org/W2021169743","https://openalex.org/W2022680838","https://openalex.org/W2022989578","https://openalex.org/W2024373248","https://openalex.org/W2024543747","https://openalex.org/W2033153339","https://openalex.org/W2034861886","https://openalex.org/W2039388179","https://openalex.org/W2050492944","https://openalex.org/W2054939920","https://openalex.org/W2060333218","https://openalex.org/W2061507981","https://openalex.org/W2066609648","https://openalex.org/W2070005660","https://openalex.org/W2073127340","https://openalex.org/W2076551443","https://openalex.org/W2076639605","https://openalex.org/W2081873094","https://openalex.org/W2087202599","https://openalex.org/W2088534416","https://openalex.org/W2095104107","https://openalex.org/W2095425343","https://openalex.org/W2096512960","https://openalex.org/W2106882534","https://openalex.org/W2122261141","https://openalex.org/W2122683207","https://openalex.org/W2123043638","https://openalex.org/W2126939471","https://openalex.org/W2141885858","https://openalex.org/W2142831360","https://openalex.org/W2150408362","https://openalex.org/W2159175227","https://openalex.org/W2159275009","https://openalex.org/W2161746138","https://openalex.org/W2166557174","https://openalex.org/W2167174534","https://openalex.org/W2168797800","https://openalex.org/W2168946125","https://openalex.org/W2178351178","https://openalex.org/W2181900822","https://openalex.org/W2196778533","https://openalex.org/W2764679875","https://openalex.org/W4210400672","https://openalex.org/W4239132621","https://openalex.org/W6629003624","https://openalex.org/W6685967733"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2414472555","https://openalex.org/W2357602378","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W2363997565","https://openalex.org/W2061945526","https://openalex.org/W3138728990","https://openalex.org/W2047971925","https://openalex.org/W2179155267"],"abstract_inverted_index":{"Leishmania":[0,31],"is":[1],"associated":[2],"with":[3],"a":[4],"broad":[5],"spectrum":[6],"of":[7,20,24,30,39,44,64],"diseases,":[8],"ranging":[9],"from":[10,35],"simple":[11],"cutaneous":[12],"to":[13,69,78],"invasive":[14],"visceral":[15],"leishmaniasis.":[16],"Here,":[17],"the":[18,65],"sequences":[19],"ten":[21],"cysteine":[22,46],"proteases":[23,47],"types":[25],"A,":[26],"B":[27,74,87],"and":[28],"C":[29],"major":[32],"were":[33,67,84],"obtained":[34],"GeneDB":[36],"database.":[37],"Prediction":[38],"MHC":[40],"class":[41],"I":[42],"epitopes":[43],"these":[45],"was":[48],"performed":[49],"by":[50,57],"NetCTL":[51],"program":[52],"version":[53],"1.2.":[54],"In":[55],"addition,":[56],"using":[58],"BcePred":[59],"server,":[60],"different":[61],"structural":[62],"properties":[63],"proteins":[66],"predicted":[68,85],"find":[70],"out":[71],"their":[72],"potential":[73],"cell":[75,88],"epitopes.":[76,89],"According":[77],"this":[79],"computational":[80],"analysis,":[81],"nine":[82],"regions":[83],"as":[86],"The":[90],"results":[91],"provide":[92],"useful":[93],"information":[94],"for":[95],"designing":[96],"peptide-based":[97],"vaccines.":[98]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-03-10T16:38:18.471706","created_date":"2016-06-24T00:00:00"}
