{"id":"https://openalex.org/W1992372028","doi":"https://doi.org/10.1016/s1672-0229(07)60013-8","title":"Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis Methods","display_name":"Generation of Synthetic Transcriptome Data with Defined Statistical Properties for the Development and Testing of New Analysis Methods","publication_year":2007,"publication_date":"2007-03-01","ids":{"openalex":"https://openalex.org/W1992372028","doi":"https://doi.org/10.1016/s1672-0229(07)60013-8","mag":"1992372028","pmid":"https://pubmed.ncbi.nlm.nih.gov/17572363"},"language":"en","primary_location":{"id":"doi:10.1016/s1672-0229(07)60013-8","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(07)60013-8","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/s1672-0229(07)60013-8","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074121731","display_name":"Guillaume Brysbaert","orcid":"https://orcid.org/0000-0002-6807-6621"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I84909340","display_name":"Institut des Hautes \u00c9tudes Scientifiques","ror":"https://ror.org/05d5m2r55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I84909340"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Guillaume Brysbaert","raw_affiliation_strings":["Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I84909340"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058675660","display_name":"Sebastian Noth","orcid":null},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I84909340","display_name":"Institut des Hautes \u00c9tudes Scientifiques","ror":"https://ror.org/05d5m2r55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I84909340"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sebastian Noth","raw_affiliation_strings":["Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I84909340"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5054769886","display_name":"Arndt Benecke","orcid":"https://orcid.org/0000-0002-7121-823X"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I154526488","display_name":"Inserm","ror":"https://ror.org/02vjkv261","country_code":"FR","type":"government","lineage":["https://openalex.org/I154526488"]},{"id":"https://openalex.org/I84909340","display_name":"Institut des Hautes \u00c9tudes Scientifiques","ror":"https://ror.org/05d5m2r55","country_code":"FR","type":"facility","lineage":["https://openalex.org/I84909340"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Arndt Benecke","raw_affiliation_strings":["Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Systems Epigenomics Group, Institut des Hautes Etudes Scientifiques/Institut de Recherches Interdisciplinaires, CNRS/INSERM , Bures sur Yvette, 91440 , France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I154526488","https://openalex.org/I84909340"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":3650,"currency":"USD","value_usd":3650},"apc_paid":{"value":3650,"currency":"USD","value_usd":3650},"fwci":0.1257,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.49794522,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":95},"biblio":{"volume":"5","issue":"1","first_page":"45","last_page":"52"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7540732622146606},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.6847743391990662},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.6474329829216003},{"id":"https://openalex.org/keywords/statistical-hypothesis-testing","display_name":"Statistical hypothesis testing","score":0.47768670320510864},{"id":"https://openalex.org/keywords/synthetic-data","display_name":"Synthetic data","score":0.4677448570728302},{"id":"https://openalex.org/keywords/sensitivity","display_name":"Sensitivity (control systems)","score":0.4593868553638458},{"id":"https://openalex.org/keywords/variance","display_name":"Variance (accounting)","score":0.41862356662750244},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.22671493887901306},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.22668081521987915},{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.1444304883480072},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1318933069705963}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7540732622146606},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.6847743391990662},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.6474329829216003},{"id":"https://openalex.org/C87007009","wikidata":"https://www.wikidata.org/wiki/Q210832","display_name":"Statistical hypothesis testing","level":2,"score":0.47768670320510864},{"id":"https://openalex.org/C160920958","wikidata":"https://www.wikidata.org/wiki/Q7662746","display_name":"Synthetic data","level":2,"score":0.4677448570728302},{"id":"https://openalex.org/C21200559","wikidata":"https://www.wikidata.org/wiki/Q7451068","display_name":"Sensitivity (control systems)","level":2,"score":0.4593868553638458},{"id":"https://openalex.org/C196083921","wikidata":"https://www.wikidata.org/wiki/Q7915758","display_name":"Variance (accounting)","level":2,"score":0.41862356662750244},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.22671493887901306},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.22668081521987915},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.1444304883480072},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1318933069705963},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C24326235","wikidata":"https://www.wikidata.org/wiki/Q126095","display_name":"Electronic engineering","level":1,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C121955636","wikidata":"https://www.wikidata.org/wiki/Q4116214","display_name":"Accounting","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014158","descriptor_name":"Transcription, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/s1672-0229(07)60013-8","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(07)60013-8","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},{"id":"pmid:17572363","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/17572363","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:4016471","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/5054096","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/s1672-0229(07)60013-8","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1672-0229(07)60013-8","pdf_url":null,"source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics &amp; Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320310646","display_name":"European Hematology Association","ror":"https://ror.org/05hk0hn26"},{"id":"https://openalex.org/F4320320893","display_name":"Institut National de la Sant\u00e9 et de la Recherche M\u00e9dicale","ror":"https://ror.org/02vjkv261"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320337227","display_name":"Institut des Hautes \u00c9tudes Scientifiques, Universit\u00e9 Paris-Saclay","ror":"https://ror.org/05d5m2r55"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":10,"referenced_works":["https://openalex.org/W1486632395","https://openalex.org/W2001168187","https://openalex.org/W2008821724","https://openalex.org/W2083550293","https://openalex.org/W2091198609","https://openalex.org/W2098841537","https://openalex.org/W2103994569","https://openalex.org/W2130010891","https://openalex.org/W2146997097","https://openalex.org/W6674632333"],"related_works":["https://openalex.org/W3008339103","https://openalex.org/W2404647514","https://openalex.org/W1667647204","https://openalex.org/W4247536566","https://openalex.org/W3119814709","https://openalex.org/W2018477250","https://openalex.org/W1508895727","https://openalex.org/W4241418540","https://openalex.org/W2725786787","https://openalex.org/W4283160672"],"abstract_inverted_index":{"We":[0],"have":[1,62],"previously":[2],"developed":[3],"a":[4,138],"combined":[5],"signal/variance":[6],"distribution":[7],"model":[8,31,116],"that":[9,29,60,147],"accounts":[10],"for":[11,140,151],"the":[12,20,48,54,81,92,95,110,118,129,141],"particular":[13],"statistical":[14,41],"properties":[15,42],"of":[16,47,53,68,78,80,91,128,131,143,156],"datasets":[17,39],"generated":[18],"on":[19,94,109],"Applied":[21],"Biosystems":[22],"AB1700":[23,69],"transcriptome":[24,70],"system.":[25],"Here":[26],"we":[27,61],"show":[28],"this":[30],"can":[32],"be":[33,149],"efficiently":[34],"used":[35],"to":[36,45,88,99],"generate":[37],"synthetic":[38,144],"with":[40],"virtually":[43],"identical":[44],"those":[46],"actual":[49],"data":[50,93,115,146],"by":[51],"aid":[52],"JAVA":[55],"application":[56,122],"ace.map":[57,119],"creator":[58,120],"1.0":[59,121],"developed.":[63],"The":[64],"fundamentally":[65],"different":[66],"structure":[67],"profiles":[71],"requires":[72],"re-evaluation,":[73],"adaptation,":[74],"or":[75],"even":[76],"redevelopment":[77],"many":[79],"standard":[82],"microarray":[83],"analysis":[84,157],"methods":[85],"in":[86],"order":[87],"avoid":[89],"misinterpretation":[90],"one":[96],"hand,":[97],"and":[98,107,117,154],"draw":[100],"full":[101],"benefit":[102],"from":[103],"their":[104],"increased":[105],"specificity":[106],"sensitivity":[108],"other":[111],"hand.":[112],"Our":[113],"composite":[114],"thereby":[123],"not":[124],"only":[125],"present":[126],"proof":[127],"correctness":[130],"our":[132],"parameter":[133],"estimation,":[134],"but":[135],"also":[136],"provide":[137],"tool":[139],"generation":[142],"test":[145],"will":[148],"useful":[150],"further":[152],"development":[153],"testing":[155],"methods.":[158]},"counts_by_year":[{"year":2025,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
