{"id":"https://openalex.org/W1560892884","doi":"https://doi.org/10.1016/s1571-0661(04)80787-4","title":"Using Secondary Structure Information for Protein Folding in CLP()","display_name":"Using Secondary Structure Information for Protein Folding in CLP()","publication_year":2002,"publication_date":"2002-11-01","ids":{"openalex":"https://openalex.org/W1560892884","doi":"https://doi.org/10.1016/s1571-0661(04)80787-4","mag":"1560892884"},"language":"en","primary_location":{"id":"doi:10.1016/s1571-0661(04)80787-4","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1571-0661(04)80787-4","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1571066104807874/pdf","source":{"id":"https://openalex.org/S50368787","display_name":"Electronic Notes in Theoretical Computer Science","issn_l":"1571-0661","issn":["1571-0661"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Electronic Notes in Theoretical Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://www.sciencedirect.com/science/article/pii/S1571066104807874/pdf","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064407367","display_name":"Agostino Dovier","orcid":"https://orcid.org/0000-0003-2052-8593"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Agostino Dovier","raw_affiliation_strings":["Dip. di Matematica e Informatica, Univ. di Udine. Via delle Scienze 206, 33100 Udine, (Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dip. di Matematica e Informatica, Univ. di Udine. Via delle Scienze 206, 33100 Udine, (Italy)","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077438962","display_name":"Matteo Burato","orcid":"https://orcid.org/0000-0001-8754-5545"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Matteo Burato","raw_affiliation_strings":["Dip. Scientifico-Tecnologico, Univ. di Verona. Strada Le Grazie 15, 37134 Verona, (Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dip. Scientifico-Tecnologico, Univ. di Verona. Strada Le Grazie 15, 37134 Verona, (Italy)","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010370846","display_name":"Federico Fogolari","orcid":"https://orcid.org/0000-0001-9862-250X"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Federico Fogolari","raw_affiliation_strings":["Dip. Scientifico-Tecnologico, Univ. di Verona. Strada Le Grazie 15, 37134 Verona, (Italy)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dip. Scientifico-Tecnologico, Univ. di Verona. Strada Le Grazie 15, 37134 Verona, (Italy)","institution_ids":["https://openalex.org/I119439378"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5010370846","https://openalex.org/A5064407367"],"corresponding_institution_ids":["https://openalex.org/I119439378","https://openalex.org/I129043915"],"apc_list":null,"apc_paid":null,"fwci":0.7666,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.68029685,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"76","issue":null,"first_page":"83","last_page":"98"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9921000003814697,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9674000144004822,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9650999903678894,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.7876461744308472},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6089016199111938},{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.6049526333808899},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5905402898788452},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5419692397117615},{"id":"https://openalex.org/keywords/protein-secondary-structure","display_name":"Protein secondary structure","score":0.49955296516418457},{"id":"https://openalex.org/keywords/space","display_name":"Space (punctuation)","score":0.4368413984775543},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.4266878366470337},{"id":"https://openalex.org/keywords/information-structure","display_name":"Information structure","score":0.42241600155830383},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.41645199060440063},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.38504064083099365},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3592095971107483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.15278199315071106},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.0803551971912384},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.06907132267951965}],"concepts":[{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.7876461744308472},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6089016199111938},{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.6049526333808899},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5905402898788452},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5419692397117615},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.49955296516418457},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.4368413984775543},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.4266878366470337},{"id":"https://openalex.org/C2779954242","wikidata":"https://www.wikidata.org/wiki/Q6031227","display_name":"Information structure","level":2,"score":0.42241600155830383},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.41645199060440063},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.38504064083099365},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3592095971107483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.15278199315071106},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0803551971912384},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.06907132267951965},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/s1571-0661(04)80787-4","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1571-0661(04)80787-4","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1571066104807874/pdf","source":{"id":"https://openalex.org/S50368787","display_name":"Electronic Notes in Theoretical Computer Science","issn_l":"1571-0661","issn":["1571-0661"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Electronic Notes in Theoretical Computer Science","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/s1571-0661(04)80787-4","is_oa":true,"landing_page_url":"https://doi.org/10.1016/s1571-0661(04)80787-4","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1571066104807874/pdf","source":{"id":"https://openalex.org/S50368787","display_name":"Electronic Notes in Theoretical Computer Science","issn_l":"1571-0661","issn":["1571-0661"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Electronic Notes in Theoretical Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1560892884.pdf","grobid_xml":"https://content.openalex.org/works/W1560892884.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1538305354","https://openalex.org/W1550665603","https://openalex.org/W1589232796","https://openalex.org/W1887936579","https://openalex.org/W1985818354","https://openalex.org/W1988104068","https://openalex.org/W2004673600","https://openalex.org/W2009175282","https://openalex.org/W2013842855","https://openalex.org/W2045777307","https://openalex.org/W2053846587","https://openalex.org/W2130479394","https://openalex.org/W2130949317","https://openalex.org/W2132717858","https://openalex.org/W2163333444","https://openalex.org/W2171546617","https://openalex.org/W2604355003","https://openalex.org/W2611927968","https://openalex.org/W3159226331","https://openalex.org/W6632421381","https://openalex.org/W6639654709","https://openalex.org/W6735631022"],"related_works":["https://openalex.org/W4206825711","https://openalex.org/W2928838901","https://openalex.org/W2260493136","https://openalex.org/W2113188411","https://openalex.org/W4210423528","https://openalex.org/W2976965029","https://openalex.org/W2081163211","https://openalex.org/W2939859775","https://openalex.org/W2055827177","https://openalex.org/W2023600921"],"abstract_inverted_index":{"The":[0],"protein":[1,14,44],"folding":[2,45],"problem":[3,6],"is":[4,23],"the":[5,9,16,43,65],"of":[7,12,19,42],"predicting":[8],"3D":[10],"structure":[11,58],"a":[13,30],"when":[15],"linear":[17],"sequence":[18],"aminoacids":[20],"identifying":[21],"it":[22],"known.":[24],"In":[25],"this":[26],"paper":[27],"we":[28],"present":[29],"declarative":[31],"implementation":[32],"in":[33,38],"Constrain":[34],"&":[35],"Generate":[36],"style":[37],"CLP(":[39],"FD":[40],")":[41],"problem,":[46],"for":[47],"models":[48],"based":[49],"on":[50,70],"face-centered":[51],"cubes.":[52],"We":[53],"use":[54],"information":[55],"concerning":[56],"secondary":[57],"(and":[59],"other":[60],"heuristics)":[61],"to":[62],"sensibly":[63],"prune":[64],"search":[66],"space.":[67],"Preliminary":[68],"results":[69],"real":[71],"proteins":[72],"are":[73],"encouraging.":[74]},"counts_by_year":[{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-02T14:50:37.381335","created_date":"2025-10-10T00:00:00"}
