{"id":"https://openalex.org/W1522976700","doi":"https://doi.org/10.1016/s0925-7721(02)00134-7","title":"Long proteins with unique optimal foldings in the H-P model","display_name":"Long proteins with unique optimal foldings in the H-P model","publication_year":2003,"publication_date":"2003-02-28","ids":{"openalex":"https://openalex.org/W1522976700","doi":"https://doi.org/10.1016/s0925-7721(02)00134-7","mag":"1522976700"},"language":"en","primary_location":{"id":"doi:10.1016/s0925-7721(02)00134-7","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0925-7721(02)00134-7","pdf_url":null,"source":{"id":"https://openalex.org/S165542689","display_name":"Computational Geometry","issn_l":"0925-7721","issn":["0925-7721","1879-081X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Geometry","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/cs/0201018","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5091823049","display_name":"Oswin Aichholzer","orcid":"https://orcid.org/0000-0002-2364-0583"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Oswin Aichholzer","raw_affiliation_strings":["Institut fur Grundlagen der Informationsverarbeitung, Technische Universit\u00e4t Graz, Inffeldgasse 16b, A-8010 Graz, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut fur Grundlagen der Informationsverarbeitung, Technische Universit\u00e4t Graz, Inffeldgasse 16b, A-8010 Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":null,"display_name":"David Bremner","orcid":null},"institutions":[{"id":"https://openalex.org/I106938459","display_name":"University of New Brunswick","ror":"https://ror.org/05nkf0n29","country_code":"CA","type":"education","lineage":["https://openalex.org/I106938459"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David Bremner","raw_affiliation_strings":["Faculty of Computer Science, University of New Brunswick, P.O. Box 4400, Fredericton, N.B. E3B 5A3, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Computer Science, University of New Brunswick, P.O. Box 4400, Fredericton, N.B. E3B 5A3, Canada","institution_ids":["https://openalex.org/I106938459"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083684609","display_name":"Erik D. Demaine","orcid":"https://orcid.org/0000-0003-3803-5703"},"institutions":[{"id":"https://openalex.org/I63966007","display_name":"Massachusetts Institute of Technology","ror":"https://ror.org/042nb2s44","country_code":"US","type":"education","lineage":["https://openalex.org/I63966007"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Erik D. Demaine","raw_affiliation_strings":["MIT Laboratory for Computer Science, 200 Technology Square, Cambridge, MA 02139, USA","MIT Laboratory for Computer Science, 200 Technology Square, Cambridge, MA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MIT Laboratory for Computer Science, 200 Technology Square, Cambridge, MA 02139, USA","institution_ids":["https://openalex.org/I63966007"]},{"raw_affiliation_string":"MIT Laboratory for Computer Science, 200 Technology Square, Cambridge, MA#TAB#","institution_ids":["https://openalex.org/I63966007"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045375742","display_name":"Henk Meijer","orcid":"https://orcid.org/0000-0003-0406-3327"},"institutions":[{"id":"https://openalex.org/I204722609","display_name":"Queen's University","ror":"https://ror.org/02y72wh86","country_code":"CA","type":"education","lineage":["https://openalex.org/I204722609"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"Henk Meijer","raw_affiliation_strings":["Department of Computing and Information Science, Queen's University, Kingston, Ontario K7L 3N6, Canada","Department of Computing and Information Science,  Queen's University, Kingston, Ontario K7L 3N6, Canada"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing and Information Science, Queen's University, Kingston, Ontario K7L 3N6, Canada","institution_ids":["https://openalex.org/I204722609"]},{"raw_affiliation_string":"Department of Computing and Information Science,  Queen's University, Kingston, Ontario K7L 3N6, Canada","institution_ids":["https://openalex.org/I204722609"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012371112","display_name":"Vera Sacrist\u00e1n","orcid":"https://orcid.org/0000-0003-0203-256X"},"institutions":[{"id":"https://openalex.org/I9617848","display_name":"Universitat Polit\u00e8cnica de Catalunya","ror":"https://ror.org/03mb6wj31","country_code":"ES","type":"education","lineage":["https://openalex.org/I9617848"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Vera Sacrist\u00e1n","raw_affiliation_strings":["Departament de Matem\u00e0tica Aplicada II, Universitat Polit\u00e8cnica de Catalunya, Pau Gargallo 5, 08028 Barcelona, Spain","Dept. de Matem\u00e0tica Aplicada II, Universitat Polit\u00e8cnica de Catalunya, Pau Gargallo 5, 08028-Barcelona, Spain"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departament de Matem\u00e0tica Aplicada II, Universitat Polit\u00e8cnica de Catalunya, Pau Gargallo 5, 08028 Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]},{"raw_affiliation_string":"Dept. de Matem\u00e0tica Aplicada II, Universitat Polit\u00e8cnica de Catalunya, Pau Gargallo 5, 08028-Barcelona, Spain","institution_ids":["https://openalex.org/I9617848"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5112239284","display_name":"Michael Soss","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Michael Soss","raw_affiliation_strings":["Chemical Computing Group, 1010 Sherbrooke St. West, Suite 910, Montreal, Quebec H3A 2R7, Canada","Chemical Computing Group, 1010 Sherbrooke St. West, Suite 910, Montreal, Quebec H3A 2R7, Canada#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chemical Computing Group, 1010 Sherbrooke St. West, Suite 910, Montreal, Quebec H3A 2R7, Canada","institution_ids":[]},{"raw_affiliation_string":"Chemical Computing Group, 1010 Sherbrooke St. West, Suite 910, Montreal, Quebec H3A 2R7, Canada#TAB#","institution_ids":[]}]}],"institutions":[],"countries_distinct_count":4,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5083684609"],"corresponding_institution_ids":["https://openalex.org/I63966007"],"apc_list":{"value":2180,"currency":"USD","value_usd":2180},"apc_paid":null,"fwci":0.1084,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.42999624,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"25","issue":"1-2","first_page":"139","last_page":"159"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9817000031471252,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-folding","display_name":"Protein folding","score":0.6772993803024292},{"id":"https://openalex.org/keywords/monomer","display_name":"Monomer","score":0.6273325085639954},{"id":"https://openalex.org/keywords/folding","display_name":"Folding (DSP implementation)","score":0.5573458671569824},{"id":"https://openalex.org/keywords/amino-acid","display_name":"Amino acid","score":0.5469080805778503},{"id":"https://openalex.org/keywords/property","display_name":"Property (philosophy)","score":0.531898021697998},{"id":"https://openalex.org/keywords/simple","display_name":"Simple (philosophy)","score":0.5214242935180664},{"id":"https://openalex.org/keywords/amino-acid-residue","display_name":"Amino acid residue","score":0.46775269508361816},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.4632500410079956},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.4604770243167877},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.44716745615005493},{"id":"https://openalex.org/keywords/state","display_name":"State (computer science)","score":0.44279155135154724},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.3511657118797302},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.30359023809432983},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.292658269405365},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.21647024154663086},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.19591480493545532},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10498860478401184}],"concepts":[{"id":"https://openalex.org/C204328495","wikidata":"https://www.wikidata.org/wiki/Q847556","display_name":"Protein folding","level":2,"score":0.6772993803024292},{"id":"https://openalex.org/C166940927","wikidata":"https://www.wikidata.org/wiki/Q178827","display_name":"Monomer","level":3,"score":0.6273325085639954},{"id":"https://openalex.org/C2776545253","wikidata":"https://www.wikidata.org/wiki/Q5464292","display_name":"Folding (DSP implementation)","level":2,"score":0.5573458671569824},{"id":"https://openalex.org/C515207424","wikidata":"https://www.wikidata.org/wiki/Q8066","display_name":"Amino acid","level":2,"score":0.5469080805778503},{"id":"https://openalex.org/C189950617","wikidata":"https://www.wikidata.org/wiki/Q937228","display_name":"Property (philosophy)","level":2,"score":0.531898021697998},{"id":"https://openalex.org/C2780586882","wikidata":"https://www.wikidata.org/wiki/Q7520643","display_name":"Simple (philosophy)","level":2,"score":0.5214242935180664},{"id":"https://openalex.org/C2994376932","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Amino acid residue","level":4,"score":0.46775269508361816},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.4632500410079956},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.4604770243167877},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.44716745615005493},{"id":"https://openalex.org/C48103436","wikidata":"https://www.wikidata.org/wiki/Q599031","display_name":"State (computer science)","level":2,"score":0.44279155135154724},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.3511657118797302},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.30359023809432983},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.292658269405365},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.21647024154663086},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.19591480493545532},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10498860478401184},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C521977710","wikidata":"https://www.wikidata.org/wiki/Q81163","display_name":"Polymer","level":2,"score":0.0},{"id":"https://openalex.org/C178790620","wikidata":"https://www.wikidata.org/wiki/Q11351","display_name":"Organic chemistry","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C119599485","wikidata":"https://www.wikidata.org/wiki/Q43035","display_name":"Electrical engineering","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[],"locations_count":9,"locations":[{"id":"doi:10.1016/s0925-7721(02)00134-7","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0925-7721(02)00134-7","pdf_url":null,"source":{"id":"https://openalex.org/S165542689","display_name":"Computational Geometry","issn_l":"0925-7721","issn":["0925-7721","1879-081X"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computational Geometry","raw_type":"journal-article"},{"id":"pmh:oai:arXiv.org:cs/0201018","is_oa":true,"landing_page_url":"http://arxiv.org/abs/cs/0201018","pdf_url":"https://arxiv.org/pdf/cs/0201018","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.147.648","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.147.648","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www-ma2.upc.es/~vera/LongProteins.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.25.2679","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.25.2679","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://cgm.cs.mcgill.ca/~soss/publications/lpwuofhpm.ps","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.342.6250","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.342.6250","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://arxiv.org/pdf/cs/0201018v1.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.99.8775","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.99.8775","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://erikdemaine.org/papers/RedBlue_CGTA2003/paper.pdf","raw_type":"text"},{"id":"pmh:oai:dspace.mit.edu:1721.1/86069","is_oa":true,"landing_page_url":"http://hdl.handle.net/1721.1/86069","pdf_url":null,"source":{"id":"https://openalex.org/S4306400425","display_name":"DSpace@MIT (Massachusetts Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I63966007","host_organization_name":"Massachusetts Institute of Technology","host_organization_lineage":["https://openalex.org/I63966007"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc","license_id":"https://openalex.org/licenses/cc-by-nc","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Elsevier Open Archive","raw_type":"Article"},{"id":"doi:10.48550/arxiv.cs/0201018","is_oa":true,"landing_page_url":"https://doi.org/10.48550/arxiv.cs/0201018","pdf_url":null,"source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"Preprint"},{"id":"mag:1522976700","is_oa":false,"landing_page_url":"https://dspace.mit.edu/handle/1721.1/86069","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:arXiv.org:cs/0201018","is_oa":true,"landing_page_url":"http://arxiv.org/abs/cs/0201018","pdf_url":"https://arxiv.org/pdf/cs/0201018","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":"2331-8422","issn":["2331-8422"],"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.8600000143051147}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321837","display_name":"Ministerio de Econom\u00eda y Competitividad","ror":"https://ror.org/034900433"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"},{"id":"https://openalex.org/F4320335162","display_name":"Departament d'Universitats, Recerca i Societat de la Informaci\u00f3","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":33,"referenced_works":["https://openalex.org/W1534927585","https://openalex.org/W1569560802","https://openalex.org/W1965857389","https://openalex.org/W1984527736","https://openalex.org/W1999669514","https://openalex.org/W2005865331","https://openalex.org/W2013842855","https://openalex.org/W2019419950","https://openalex.org/W2039992864","https://openalex.org/W2070783701","https://openalex.org/W2079492386","https://openalex.org/W2094124635","https://openalex.org/W2101206889","https://openalex.org/W2114899912","https://openalex.org/W2130479394","https://openalex.org/W2162435335","https://openalex.org/W2180204534","https://openalex.org/W2610550235","https://openalex.org/W2611927968","https://openalex.org/W4249322510","https://openalex.org/W4255849461","https://openalex.org/W6603240817","https://openalex.org/W6606728151","https://openalex.org/W6631457762","https://openalex.org/W6632074684","https://openalex.org/W6632254352","https://openalex.org/W6633367232","https://openalex.org/W6633734159","https://openalex.org/W6642570060","https://openalex.org/W6657082370","https://openalex.org/W6662290539","https://openalex.org/W6674235276","https://openalex.org/W6679562389"],"related_works":["https://openalex.org/W2949656247","https://openalex.org/W2615474069","https://openalex.org/W2023088653","https://openalex.org/W1981448105","https://openalex.org/W1980471666","https://openalex.org/W200248288","https://openalex.org/W2151369504","https://openalex.org/W2161740585","https://openalex.org/W73281488","https://openalex.org/W2153968220","https://openalex.org/W2077444880","https://openalex.org/W2046437109","https://openalex.org/W2009175282","https://openalex.org/W2042380360","https://openalex.org/W2331398615","https://openalex.org/W1973220360","https://openalex.org/W2055802000","https://openalex.org/W140432077","https://openalex.org/W2044881953","https://openalex.org/W1999669514"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}
