{"id":"https://openalex.org/W2051815856","doi":"https://doi.org/10.1016/s0097-8485(02)00007-4","title":"Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes","display_name":"Strategies for the identification, the assembly and the classification of integrated biological systems in completely sequenced genomes","publication_year":2002,"publication_date":"2002-07-01","ids":{"openalex":"https://openalex.org/W2051815856","doi":"https://doi.org/10.1016/s0097-8485(02)00007-4","mag":"2051815856","pmid":"https://pubmed.ncbi.nlm.nih.gov/12144175"},"language":"en","primary_location":{"id":"doi:10.1016/s0097-8485(02)00007-4","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0097-8485(02)00007-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210194753","display_name":"Computers & Chemistry","issn_l":"0097-8485","issn":["0097-8485","1879-0763"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320146","host_organization_name":"Pergamon Press","host_organization_lineage":["https://openalex.org/P4310320146"],"host_organization_lineage_names":["Pergamon Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers &amp; Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5009532351","display_name":"Yves Quentin","orcid":"https://orcid.org/0000-0001-8248-0586"},"institutions":[{"id":"https://openalex.org/I4210157660","display_name":"Laboratoire de Chimie Bact\u00e9rienne","ror":"https://ror.org/057zme681","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210157660"]},{"id":"https://openalex.org/I4210152516","display_name":"Institut de Biologie Structurale","ror":"https://ror.org/04szabx38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210091409","https://openalex.org/I4210096427","https://openalex.org/I4210113668","https://openalex.org/I4210152516","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yves Quentin","raw_affiliation_strings":["Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS 31, Marseille, France","Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS 31, Marseille, France","institution_ids":[]},{"raw_affiliation_string":"Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France","institution_ids":["https://openalex.org/I4210157660","https://openalex.org/I4210152516","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032966322","display_name":"Julie Chabalier","orcid":null},"institutions":[{"id":"https://openalex.org/I4210115196","display_name":"Laboratoire d\u2019Informatique Fondamentale de Marseille","ror":"https://ror.org/022my8t07","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210115196","https://openalex.org/I4210142724","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I4210152516","display_name":"Institut de Biologie Structurale","ror":"https://ror.org/04szabx38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210091409","https://openalex.org/I4210096427","https://openalex.org/I4210113668","https://openalex.org/I4210152516","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210157660","display_name":"Laboratoire de Chimie Bact\u00e9rienne","ror":"https://ror.org/057zme681","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210157660"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Chabalier","raw_affiliation_strings":["Laboratoire d'Informatique Fondamentale de Marseille, Universit\u00e9 de Provence/CNRS, 39, ave. Joliot-Curie, 13453, Marseille Cedex 13, France","Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS 31, Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire d'Informatique Fondamentale de Marseille, Universit\u00e9 de Provence/CNRS, 39, ave. Joliot-Curie, 13453, Marseille Cedex 13, France","institution_ids":["https://openalex.org/I4210115196","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS 31, Chemin Joseph Aiguier, 13402, Marseille Cedex 20, France","institution_ids":["https://openalex.org/I4210157660","https://openalex.org/I4210152516","https://openalex.org/I1294671590"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052670756","display_name":"Gwenna\u00eble Fichant","orcid":"https://orcid.org/0000-0001-5480-0239"},"institutions":[{"id":"https://openalex.org/I4210152516","display_name":"Institut de Biologie Structurale","ror":"https://ror.org/04szabx38","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I2738703131","https://openalex.org/I4210091409","https://openalex.org/I4210096427","https://openalex.org/I4210113668","https://openalex.org/I4210152516","https://openalex.org/I899635006"]},{"id":"https://openalex.org/I4210157660","display_name":"Laboratoire de Chimie Bact\u00e9rienne","ror":"https://ror.org/057zme681","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I21491767","https://openalex.org/I4210096427","https://openalex.org/I4210157660"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gwennaele Fichant","raw_affiliation_strings":["Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France"],"affiliations":[{"raw_affiliation_string":"Laboratoire de Chimie Bact\u00e9rienne, Institut de Biologie Structurale et Microbiologie, CNRS, 31 Chemin Joseph Aiguier, 13402 Marseille Cedex 20, France","institution_ids":["https://openalex.org/I4210157660","https://openalex.org/I4210152516","https://openalex.org/I1294671590"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5009532351"],"corresponding_institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I4210152516","https://openalex.org/I4210157660"],"apc_list":null,"apc_paid":null,"fwci":0.4553,"has_fulltext":false,"cited_by_count":14,"citation_normalized_percentile":{"value":0.61463703,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":97,"max":98},"biblio":{"volume":"26","issue":"5","first_page":"447","last_page":"457"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bottleneck","display_name":"Bottleneck","score":0.7497605681419373},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.7060651779174805},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6846909523010254},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.651382565498352},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6464353799819946},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5510702729225159},{"id":"https://openalex.org/keywords/genome-project","display_name":"Genome project","score":0.48759642243385315},{"id":"https://openalex.org/keywords/human-genome","display_name":"Human genome","score":0.42384248971939087},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37908273935317993},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.25548550486564636},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.24954062700271606},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.14636415243148804}],"concepts":[{"id":"https://openalex.org/C2780513914","wikidata":"https://www.wikidata.org/wiki/Q18210350","display_name":"Bottleneck","level":2,"score":0.7497605681419373},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.7060651779174805},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6846909523010254},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.651382565498352},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6464353799819946},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5510702729225159},{"id":"https://openalex.org/C89566754","wikidata":"https://www.wikidata.org/wiki/Q2273828","display_name":"Genome project","level":4,"score":0.48759642243385315},{"id":"https://openalex.org/C197077220","wikidata":"https://www.wikidata.org/wiki/Q720988","display_name":"Human genome","level":4,"score":0.42384248971939087},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37908273935317993},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.25548550486564636},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.24954062700271606},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.14636415243148804},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C149635348","wikidata":"https://www.wikidata.org/wiki/Q193040","display_name":"Embedded system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020543","descriptor_name":"Proteome","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020745","descriptor_name":"Genome, Archaeal","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/s0097-8485(02)00007-4","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0097-8485(02)00007-4","pdf_url":null,"source":{"id":"https://openalex.org/S4210194753","display_name":"Computers & Chemistry","issn_l":"0097-8485","issn":["0097-8485","1879-0763"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320146","host_organization_name":"Pergamon Press","host_organization_lineage":["https://openalex.org/P4310320146"],"host_organization_lineage_names":["Pergamon Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers &amp; Chemistry","raw_type":"journal-article"},{"id":"pmid:12144175","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/12144175","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers & chemistry","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320313934","display_name":"Institut national de recherche en informatique et en automatique (INRIA)","ror":"https://ror.org/02kvxyf05"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":42,"referenced_works":["https://openalex.org/W124504601","https://openalex.org/W1491126711","https://openalex.org/W1543120839","https://openalex.org/W1549958659","https://openalex.org/W1587397381","https://openalex.org/W1592870802","https://openalex.org/W1938292149","https://openalex.org/W1978156984","https://openalex.org/W1981871034","https://openalex.org/W1994021560","https://openalex.org/W1997394341","https://openalex.org/W2000250937","https://openalex.org/W2000822281","https://openalex.org/W2006700952","https://openalex.org/W2016792879","https://openalex.org/W2028769673","https://openalex.org/W2037575546","https://openalex.org/W2039358467","https://openalex.org/W2052711770","https://openalex.org/W2055043387","https://openalex.org/W2080071467","https://openalex.org/W2090436685","https://openalex.org/W2097706568","https://openalex.org/W2100941856","https://openalex.org/W2101356424","https://openalex.org/W2101447091","https://openalex.org/W2105277740","https://openalex.org/W2106882534","https://openalex.org/W2131998156","https://openalex.org/W2136563879","https://openalex.org/W2142193549","https://openalex.org/W2151831732","https://openalex.org/W2152350018","https://openalex.org/W2156205105","https://openalex.org/W2158714788","https://openalex.org/W2162097287","https://openalex.org/W2164101095","https://openalex.org/W3132589198","https://openalex.org/W6635200387","https://openalex.org/W6674647444","https://openalex.org/W6680068457","https://openalex.org/W6682587395"],"related_works":["https://openalex.org/W1999129612","https://openalex.org/W2162782320","https://openalex.org/W2059565715","https://openalex.org/W2217004864","https://openalex.org/W3111061871","https://openalex.org/W2009940763","https://openalex.org/W2114034054","https://openalex.org/W2064107380","https://openalex.org/W1969895229","https://openalex.org/W2108497208"],"abstract_inverted_index":null,"counts_by_year":[{"year":2021,"cited_by_count":5}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
