{"id":"https://openalex.org/W2020940951","doi":"https://doi.org/10.1016/s0097-8485(01)00096-1","title":"A computer system to perform structure comparison using TOPS representations of protein structure","display_name":"A computer system to perform structure comparison using TOPS representations of protein structure","publication_year":2001,"publication_date":"2001-12-01","ids":{"openalex":"https://openalex.org/W2020940951","doi":"https://doi.org/10.1016/s0097-8485(01)00096-1","mag":"2020940951","pmid":"https://pubmed.ncbi.nlm.nih.gov/11765848"},"language":"en","primary_location":{"id":"doi:10.1016/s0097-8485(01)00096-1","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0097-8485(01)00096-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210194753","display_name":"Computers & Chemistry","issn_l":"0097-8485","issn":["0097-8485","1879-0763"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320146","host_organization_name":"Pergamon Press","host_organization_lineage":["https://openalex.org/P4310320146"],"host_organization_lineage_names":["Pergamon Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers &amp; Chemistry","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://bura.brunel.ac.uk/bitstream/2438/3003/1/comp%2bchem2001.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5102913036","display_name":"David Gilbert","orcid":"https://orcid.org/0000-0002-8872-4294"},"institutions":[{"id":"https://openalex.org/I125768316","display_name":"Northampton Community College","ror":"https://ror.org/05j27jv73","country_code":"US","type":"education","lineage":["https://openalex.org/I125768316"]},{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]}],"countries":["GB","US"],"is_corresponding":false,"raw_author_name":"David Gilbert","raw_affiliation_strings":["Department of Computing, City, University, Northampton Square, London EC1V 0HB, UK. drg@soi.city.ac.uk","Department of Computing, City University, Northampton Square, London, EC1V 0HB, UK.#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, City, University, Northampton Square, London EC1V 0HB, UK. drg@soi.city.ac.uk","institution_ids":["https://openalex.org/I180825142"]},{"raw_affiliation_string":"Department of Computing, City University, Northampton Square, London, EC1V 0HB, UK.#TAB#","institution_ids":["https://openalex.org/I125768316"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032833705","display_name":"David R. Westhead","orcid":"https://orcid.org/0000-0002-0519-3820"},"institutions":[{"id":"https://openalex.org/I130828816","display_name":"University of Leeds","ror":"https://ror.org/024mrxd33","country_code":"GB","type":"education","lineage":["https://openalex.org/I130828816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Westhead","raw_affiliation_strings":["School of Biochemistry and Molecular Biology University of Leeds, Leeds LS2, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Biochemistry and Molecular Biology University of Leeds, Leeds LS2, UK","institution_ids":["https://openalex.org/I130828816"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035792920","display_name":"Juris V\u012bksna","orcid":"https://orcid.org/0000-0003-2283-2978"},"institutions":[{"id":"https://openalex.org/I180825142","display_name":"City, University of London","ror":"https://ror.org/04489at23","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I180825142"]},{"id":"https://openalex.org/I91123046","display_name":"University of Latvia","ror":"https://ror.org/05g3mes96","country_code":"LV","type":"education","lineage":["https://openalex.org/I91123046"]}],"countries":["GB","LV"],"is_corresponding":false,"raw_author_name":"Juris Viksna","raw_affiliation_strings":["Department of Computing, City University, Northampton Square, London EC1V 0HB, UK","Institute of Mathematics and Computer Science, University of Latvia, Riga LV-1459, Latvia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computing, City University, Northampton Square, London EC1V 0HB, UK","institution_ids":["https://openalex.org/I180825142"]},{"raw_affiliation_string":"Institute of Mathematics and Computer Science, University of Latvia, Riga LV-1459, Latvia","institution_ids":["https://openalex.org/I91123046"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068874280","display_name":"Janet M. Thornton","orcid":"https://orcid.org/0000-0003-0824-4096"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I45129253","display_name":"University College London","ror":"https://ror.org/02jx3x895","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I45129253"]},{"id":"https://openalex.org/I98259816","display_name":"Birkbeck, University of London","ror":"https://ror.org/02mb95055","country_code":"GB","type":"education","lineage":["https://openalex.org/I124357947","https://openalex.org/I98259816"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Janet Thornton","raw_affiliation_strings":["Department of Biochemistry University College, London WC1E 6BT, UK","Department of Crystallography, Birkbeck College, London WC1E 7HX, UK","European Institute of Bioinformatics, Hinxton, Cambridge CB10 1SD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry University College, London WC1E 6BT, UK","institution_ids":["https://openalex.org/I45129253"]},{"raw_affiliation_string":"Department of Crystallography, Birkbeck College, London WC1E 7HX, UK","institution_ids":["https://openalex.org/I98259816"]},{"raw_affiliation_string":"European Institute of Bioinformatics, Hinxton, Cambridge CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":1.6902,"has_fulltext":true,"cited_by_count":39,"citation_normalized_percentile":{"value":0.83429834,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"26","issue":"1","first_page":"23","last_page":"30"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9961000084877014,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9950000047683716,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tops","display_name":"TOPS","score":0.9408339262008667},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.8239350318908691},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.7204815745353699},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6318607330322266},{"id":"https://openalex.org/keywords/constraint","display_name":"Constraint (computer-aided design)","score":0.5476675033569336},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4876929521560669},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.47478431463241577},{"id":"https://openalex.org/keywords/matching","display_name":"Matching (statistics)","score":0.449843168258667},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.4347129762172699},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3354667127132416},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3208535313606262},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.32047125697135925},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.22010186314582825},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.17122134566307068},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.14932119846343994},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.14779308438301086},{"id":"https://openalex.org/keywords/geometry","display_name":"Geometry","score":0.09695157408714294}],"concepts":[{"id":"https://openalex.org/C2777675136","wikidata":"https://www.wikidata.org/wiki/Q835642","display_name":"TOPS","level":3,"score":0.9408339262008667},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.8239350318908691},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.7204815745353699},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6318607330322266},{"id":"https://openalex.org/C2776036281","wikidata":"https://www.wikidata.org/wiki/Q48769818","display_name":"Constraint (computer-aided design)","level":2,"score":0.5476675033569336},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4876929521560669},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.47478431463241577},{"id":"https://openalex.org/C165064840","wikidata":"https://www.wikidata.org/wiki/Q1321061","display_name":"Matching (statistics)","level":2,"score":0.449843168258667},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.4347129762172699},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3354667127132416},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3208535313606262},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.32047125697135925},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.22010186314582825},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.17122134566307068},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.14932119846343994},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.14779308438301086},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.09695157408714294},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C159737794","wikidata":"https://www.wikidata.org/wiki/Q124274","display_name":"Azimuth","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015394","descriptor_name":"Molecular Structure","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017385","descriptor_name":"Sequence Homology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1016/s0097-8485(01)00096-1","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0097-8485(01)00096-1","pdf_url":null,"source":{"id":"https://openalex.org/S4210194753","display_name":"Computers & Chemistry","issn_l":"0097-8485","issn":["0097-8485","1879-0763"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320146","host_organization_name":"Pergamon Press","host_organization_lineage":["https://openalex.org/P4310320146"],"host_organization_lineage_names":["Pergamon Press"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers &amp; Chemistry","raw_type":"journal-article"},{"id":"pmid:11765848","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/11765848","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers & chemistry","raw_type":"Comparative Study"},{"id":"pmh:oai:bura.brunel.ac.uk:2438/3003","is_oa":true,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/3003","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/3003/1/comp%2bchem2001.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Preprint"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.24.7561","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.24.7561","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://www.soi.city.ac.uk/~drg/publications/journals/comp+chem2001.pdf","raw_type":"text"}],"best_oa_location":{"id":"pmh:oai:bura.brunel.ac.uk:2438/3003","is_oa":true,"landing_page_url":"http://bura.brunel.ac.uk/handle/2438/3003","pdf_url":"http://bura.brunel.ac.uk/bitstream/2438/3003/1/comp%2bchem2001.pdf","source":{"id":"https://openalex.org/S4306401473","display_name":"Brunel University Research Archive (BURA) (Brunel University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59433898","host_organization_name":"Brunel University of London","host_organization_lineage":["https://openalex.org/I59433898"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Preprint"},"sustainable_development_goals":[{"display_name":"Partnerships for the goals","score":0.44999998807907104,"id":"https://metadata.un.org/sdg/17"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320313288","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2020940951.pdf","grobid_xml":"https://content.openalex.org/works/W2020940951.grobid-xml"},"referenced_works_count":29,"referenced_works":["https://openalex.org/W1488329660","https://openalex.org/W1647671624","https://openalex.org/W1966041739","https://openalex.org/W1976192207","https://openalex.org/W1979147581","https://openalex.org/W1982482731","https://openalex.org/W2008708467","https://openalex.org/W2009566340","https://openalex.org/W2017727500","https://openalex.org/W2018908786","https://openalex.org/W2022058405","https://openalex.org/W2024519892","https://openalex.org/W2071818582","https://openalex.org/W2080201001","https://openalex.org/W2084335551","https://openalex.org/W2084367350","https://openalex.org/W2085277871","https://openalex.org/W2093456598","https://openalex.org/W2108067237","https://openalex.org/W2114564206","https://openalex.org/W2116007667","https://openalex.org/W2129721711","https://openalex.org/W2161938295","https://openalex.org/W2164586203","https://openalex.org/W6629320136","https://openalex.org/W6636915900","https://openalex.org/W6668645939","https://openalex.org/W6677060850","https://openalex.org/W6678730215"],"related_works":["https://openalex.org/W2090630809","https://openalex.org/W3126783617","https://openalex.org/W2088162897","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W2020940951","https://openalex.org/W2166502041","https://openalex.org/W2084743099","https://openalex.org/W1495233806","https://openalex.org/W2270029940"],"abstract_inverted_index":null,"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":2},{"year":2012,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2025-10-10T00:00:00"}
