{"id":"https://openalex.org/W2110796675","doi":"https://doi.org/10.1016/s0020-0190(01)00214-9","title":"Application of a stochastic name-passing calculus to representation and simulation of molecular processes","display_name":"Application of a stochastic name-passing calculus to representation and simulation of molecular processes","publication_year":2001,"publication_date":"2001-10-01","ids":{"openalex":"https://openalex.org/W2110796675","doi":"https://doi.org/10.1016/s0020-0190(01)00214-9","mag":"2110796675"},"language":"en","primary_location":{"id":"doi:10.1016/s0020-0190(01)00214-9","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0020-0190(01)00214-9","pdf_url":null,"source":{"id":"https://openalex.org/S147953040","display_name":"Information Processing Letters","issn_l":"0020-0190","issn":["0020-0190","1872-6119"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Processing Letters","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://hdl.handle.net/11572/358343","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5028775661","display_name":"Corrado Priami","orcid":"https://orcid.org/0000-0002-3261-6235"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Corrado Priami","raw_affiliation_strings":["Dipartimento Scientifico Tecnologico, Universit\u00e0 di Verona Ca' Vignal 2, Strada Le Grazie 15, I-37134 Verona, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dipartimento Scientifico Tecnologico, Universit\u00e0 di Verona Ca' Vignal 2, Strada Le Grazie 15, I-37134 Verona, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004067604","display_name":"Aviv Regev","orcid":"https://orcid.org/0000-0003-3293-3158"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]},{"id":"https://openalex.org/I16391192","display_name":"Tel Aviv University","ror":"https://ror.org/04mhzgx49","country_code":"IL","type":"education","lineage":["https://openalex.org/I16391192"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Aviv Regev","raw_affiliation_strings":["Department of Cell Research and Immunology, Life Sciences Faculty, Tel Aviv University, Tel Aviv 69978, Israel","Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Cell Research and Immunology, Life Sciences Faculty, Tel Aviv University, Tel Aviv 69978, Israel","institution_ids":["https://openalex.org/I16391192"]},{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053718371","display_name":"Ehud Shapiro","orcid":"https://orcid.org/0009-0002-8266-3125"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"Ehud Shapiro","raw_affiliation_strings":["Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel","Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biological Chemistry, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]},{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019982665","display_name":"William B. Silverman","orcid":"https://orcid.org/0000-0003-0471-6105"},"institutions":[{"id":"https://openalex.org/I53964585","display_name":"Weizmann Institute of Science","ror":"https://ror.org/0316ej306","country_code":"IL","type":"education","lineage":["https://openalex.org/I53964585"]}],"countries":["IL"],"is_corresponding":false,"raw_author_name":"William Silverman","raw_affiliation_strings":["Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Applied Mathematics, Weizmann Institute of Science, Rehovot, 76100, Israel","institution_ids":["https://openalex.org/I53964585"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5028775661"],"corresponding_institution_ids":["https://openalex.org/I119439378"],"apc_list":{"value":2200,"currency":"USD","value_usd":2200},"apc_paid":null,"fwci":3.8006,"has_fulltext":false,"cited_by_count":464,"citation_normalized_percentile":{"value":0.94079044,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":91,"max":100},"biblio":{"volume":"80","issue":"1","first_page":"25","last_page":"31"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10142","display_name":"Formal Methods in Verification","score":0.9848999977111816,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6284390091896057},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.5871450901031494},{"id":"https://openalex.org/keywords/process-calculus","display_name":"Process calculus","score":0.562720775604248},{"id":"https://openalex.org/keywords/semantics","display_name":"Semantics (computer science)","score":0.5514644980430603},{"id":"https://openalex.org/keywords/stochastic-calculus","display_name":"Stochastic calculus","score":0.5212443470954895},{"id":"https://openalex.org/keywords/calculus","display_name":"Calculus (dental)","score":0.5204699039459229},{"id":"https://openalex.org/keywords/situation-calculus","display_name":"Situation calculus","score":0.4831797182559967},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.47406619787216187},{"id":"https://openalex.org/keywords/pi-calculus","display_name":"Pi calculus","score":0.4730997085571289},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3452773094177246},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.27276307344436646},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.24805662035942078}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6284390091896057},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.5871450901031494},{"id":"https://openalex.org/C161771561","wikidata":"https://www.wikidata.org/wiki/Q1970286","display_name":"Process calculus","level":2,"score":0.562720775604248},{"id":"https://openalex.org/C184337299","wikidata":"https://www.wikidata.org/wiki/Q1437428","display_name":"Semantics (computer science)","level":2,"score":0.5514644980430603},{"id":"https://openalex.org/C63331456","wikidata":"https://www.wikidata.org/wiki/Q1308570","display_name":"Stochastic calculus","level":4,"score":0.5212443470954895},{"id":"https://openalex.org/C2777686260","wikidata":"https://www.wikidata.org/wiki/Q144037","display_name":"Calculus (dental)","level":2,"score":0.5204699039459229},{"id":"https://openalex.org/C22497172","wikidata":"https://www.wikidata.org/wiki/Q1559077","display_name":"Situation calculus","level":2,"score":0.4831797182559967},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.47406619787216187},{"id":"https://openalex.org/C2984882572","wikidata":"https://www.wikidata.org/wiki/Q602886","display_name":"Pi calculus","level":2,"score":0.4730997085571289},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3452773094177246},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.27276307344436646},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.24805662035942078},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C84629840","wikidata":"https://www.wikidata.org/wiki/Q16979017","display_name":"Stochastic partial differential equation","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C199343813","wikidata":"https://www.wikidata.org/wiki/Q12128","display_name":"Dentistry","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C78045399","wikidata":"https://www.wikidata.org/wiki/Q11214","display_name":"Differential equation","level":2,"score":0.0}],"mesh":[],"locations_count":5,"locations":[{"id":"doi:10.1016/s0020-0190(01)00214-9","is_oa":false,"landing_page_url":"https://doi.org/10.1016/s0020-0190(01)00214-9","pdf_url":null,"source":{"id":"https://openalex.org/S147953040","display_name":"Information Processing Letters","issn_l":"0020-0190","issn":["0020-0190","1872-6119"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Information Processing Letters","raw_type":"journal-article"},{"id":"pmh:oai:eprints.biblio.unitn.it:90","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400311","display_name":"Unitn Eprints Research (Universit\u00e0 Degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Departmental Technical Report"},{"id":"pmh:oai:arpi.unipi.it:11568/881775","is_oa":false,"landing_page_url":"http://hdl.handle.net/11568/881775","pdf_url":null,"source":{"id":"https://openalex.org/S4377196265","display_name":"CINECA IRIS Institutial research information system (University of Pisa)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I108290504","host_organization_name":"University of Pisa","host_organization_lineage":["https://openalex.org/I108290504"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:iris.unitn.it:11572/358343","is_oa":true,"landing_page_url":"https://hdl.handle.net/11572/358343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},{"id":"pmh:oai:iris.unitn.it:11572/71131","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/71131","pdf_url":null,"source":{"id":"https://openalex.org/S4377196320","display_name":"Iris (University of Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"pmh:oai:iris.unitn.it:11572/358343","is_oa":true,"landing_page_url":"https://hdl.handle.net/11572/358343","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/other"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":20,"referenced_works":["https://openalex.org/W186837355","https://openalex.org/W1530422364","https://openalex.org/W1533525390","https://openalex.org/W1575619134","https://openalex.org/W1638436127","https://openalex.org/W1907401487","https://openalex.org/W2013672985","https://openalex.org/W2021089599","https://openalex.org/W2034486676","https://openalex.org/W2104855667","https://openalex.org/W2111646587","https://openalex.org/W2121115481","https://openalex.org/W2128932399","https://openalex.org/W2155418451","https://openalex.org/W2174395331","https://openalex.org/W2284263109","https://openalex.org/W2912053830","https://openalex.org/W4210827858","https://openalex.org/W6631697309","https://openalex.org/W6636944822"],"related_works":["https://openalex.org/W2610134858","https://openalex.org/W2144618901","https://openalex.org/W1857037506","https://openalex.org/W2102465510","https://openalex.org/W2133863960","https://openalex.org/W2552390304","https://openalex.org/W2042757132","https://openalex.org/W2751004291","https://openalex.org/W2127712444","https://openalex.org/W1587877137"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":4},{"year":2022,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":28},{"year":2012,"cited_by_count":18}],"updated_date":"2026-07-20T07:56:41.581041","created_date":"2025-10-10T00:00:00"}
