{"id":"https://openalex.org/W7165146221","doi":"https://doi.org/10.1016/j.softx.2026.102821","title":"yProv4DV: Filling the visualization gap in reproducible research workflows","display_name":"yProv4DV: Filling the visualization gap in reproducible research workflows","publication_year":2026,"publication_date":"2026-06-19","ids":{"openalex":"https://openalex.org/W7165146221","doi":"https://doi.org/10.1016/j.softx.2026.102821"},"language":"en","primary_location":{"id":"doi:10.1016/j.softx.2026.102821","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102821","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"type":"software-paper","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.softx.2026.102821","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024318276","display_name":"G. Padovani","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"G. Padovani","raw_affiliation_strings":["University of Trento, Trento, Italy"],"raw_orcid":"https://orcid.org/0009-0002-3711-7643","affiliations":[{"raw_affiliation_string":"University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5041397169","display_name":"S. Fiore","orcid":null},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"S. Fiore","raw_affiliation_strings":["University of Trento, Trento, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of Trento, Trento, Italy","institution_ids":["https://openalex.org/I193223587"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5024318276"],"corresponding_institution_ids":["https://openalex.org/I193223587"],"apc_list":{"value":760,"currency":"USD","value_usd":760},"apc_paid":{"value":760,"currency":"USD","value_usd":760},"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"35","issue":null,"first_page":"102821","last_page":"102821"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.86080002784729,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.86080002784729,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.0843999981880188,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.012900000438094139,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.6870999932289124},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.6590999960899353},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.3228999972343445},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.28790000081062317},{"id":"https://openalex.org/keywords/key","display_name":"Key (lock)","score":0.27309998869895935}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7559999823570251},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.6870999932289124},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.6590999960899353},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.382099986076355},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.3228999972343445},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.28790000081062317},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.27309998869895935},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.26190000772476196},{"id":"https://openalex.org/C18762648","wikidata":"https://www.wikidata.org/wiki/Q42213","display_name":"Work (physics)","level":2,"score":0.2597000002861023},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.2565999925136566}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.softx.2026.102821","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102821","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.softx.2026.102821","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102821","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322275","display_name":"Universit\u00e0 degli Studi di Trento","ror":"https://ror.org/05trd4x28"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1959365993","https://openalex.org/W2011301426","https://openalex.org/W2104892386","https://openalex.org/W2302501749","https://openalex.org/W2587995914","https://openalex.org/W2766945679","https://openalex.org/W2789543201","https://openalex.org/W2964117315","https://openalex.org/W3035965352","https://openalex.org/W3090519803","https://openalex.org/W3150635270","https://openalex.org/W4205738517","https://openalex.org/W4384131549","https://openalex.org/W4413988282","https://openalex.org/W7115556040"],"related_works":[],"abstract_inverted_index":{"While":[0],"results":[1],"visualization":[2,53,69,103,138],"is":[3],"a":[4,95,118,141,146],"critical":[5],"phase":[6],"in":[7,148,158],"the":[8,19,34,62,75,106,112,154],"communication":[9],"of":[10,22,65,77,108,135,156],"new":[11],"academic":[12],"results,":[13],"plots":[14,157],"are":[15],"frequently":[16],"shared":[17],"without":[18],"complete":[20],"combination":[21],"code,":[23],"input":[24],"data,":[25],"execution":[26],"context":[27],"and":[28,59,126,132],"outputs":[29,125],"required":[30],"to":[31,41,72,99],"independently":[32],"reproduce":[33],"resulting":[35],"figures.":[36],"Existing":[37],"reproducibility":[38,134,155],"solutions":[39],"tend":[40],"focus":[42],"on":[43],"computational":[44],"pipelines":[45],"or":[46],"workflow":[47],"management":[48],"systems,":[49],"not":[50],"covering":[51],"script-based":[52],"practices":[54],"commonly":[55],"used":[56],"by":[57,152],"researchers":[58],"practitioners.":[60],"Additionally,":[61],"minimalist":[63],"nature":[64],"current":[66],"Python":[67],"data":[68,102,137],"libraries":[70],"tends":[71],"speed":[73],"up":[74],"creation":[76],"images,":[78],"disincentivizing":[79],"users":[80,121],"from":[81],"spending":[82],"time":[83],"integrating":[84],"additional":[85],"tools":[86],"into":[87],"these":[88],"short":[89],"scripts.":[90],"This":[91],"paper":[92],"proposes":[93],"yProv4DV,":[94],"lightweight":[96],"library":[97,144],"designed":[98],"enable":[100],"reproducible":[101,149],"scripts":[104],"through":[105],"use":[107],"provenance":[109],"information,":[110],"minimizing":[111],"necessity":[113],"for":[114],"code":[115,128],"modifications.":[116],"Through":[117],"single":[119],"call,":[120],"can":[122],"track":[123],"inputs,":[124],"source":[127],"files,":[129],"enabling":[130],"saving":[131],"full":[133],"their":[136],"software.":[139],"As":[140],"result,":[142],"this":[143],"fills":[145],"gap":[147],"research":[150],"workflows":[151],"addressing":[153],"scientific":[159],"publications.":[160]},"counts_by_year":[],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2026-06-19T00:00:00"}