{"id":"https://openalex.org/W7155647924","doi":"https://doi.org/10.1016/j.softx.2026.102669","title":"HIT: A fully automated mosaicking software for corneal confocal microscopy","display_name":"HIT: A fully automated mosaicking software for corneal confocal microscopy","publication_year":2026,"publication_date":"2026-04-25","ids":{"openalex":"https://openalex.org/W7155647924","doi":"https://doi.org/10.1016/j.softx.2026.102669"},"language":"en","primary_location":{"id":"doi:10.1016/j.softx.2026.102669","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102669","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"type":"software-paper","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.softx.2026.102669","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5133917018","display_name":"Stephan Allgeier","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Stephan Allgeier","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1218-448X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051326740","display_name":"Klaus\u2010Martin Reichert","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Klaus-Martin Reichert","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0009-0003-2183-192X","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5134584567","display_name":"Ekaterina Korn","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ekaterina Korn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001459055","display_name":"Ralf Mikut","orcid":"https://orcid.org/0000-0001-9100-5496"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ralf Mikut","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9100-5496","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064672657","display_name":"Sebastian Bohn","orcid":"https://orcid.org/0000-0001-9838-1769"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sebastian Bohn","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9838-1769","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041101298","display_name":"Oliver Stachs","orcid":"https://orcid.org/0000-0002-1225-5372"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Oliver Stachs","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1225-5372","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5084196142","display_name":"Karsten Sperlich","orcid":"https://orcid.org/0000-0002-9701-0891"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Karsten Sperlich","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-9701-0891","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":["https://openalex.org/A5133917018"],"corresponding_institution_ids":[],"apc_list":{"value":500,"currency":"USD","value_usd":500},"apc_paid":{"value":500,"currency":"USD","value_usd":500},"fwci":null,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":null,"cited_by_percentile_year":null,"biblio":{"volume":"34","issue":null,"first_page":"102669","last_page":"102669"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11328","display_name":"Ocular Oncology and Treatments","score":0.22679999470710754,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11328","display_name":"Ocular Oncology and Treatments","score":0.22679999470710754,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10563","display_name":"Corneal surgery and disorders","score":0.16599999368190765,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11194","display_name":"Ocular Diseases and Beh\u00e7et\u2019s Syndrome","score":0.0786999985575676,"subfield":{"id":"https://openalex.org/subfields/2731","display_name":"Ophthalmology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/confocal-microscopy","display_name":"Confocal microscopy","score":0.5544999837875366},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5537999868392944},{"id":"https://openalex.org/keywords/confocal","display_name":"Confocal","score":0.4553000032901764},{"id":"https://openalex.org/keywords/microscopy","display_name":"Microscopy","score":0.4034999907016754},{"id":"https://openalex.org/keywords/microscope","display_name":"Microscope","score":0.33629998564720154},{"id":"https://openalex.org/keywords/image-processing","display_name":"Image processing","score":0.32100000977516174}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5605000257492065},{"id":"https://openalex.org/C2779178360","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal microscopy","level":2,"score":0.5544999837875366},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5537999868392944},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5117999911308289},{"id":"https://openalex.org/C136009344","wikidata":"https://www.wikidata.org/wiki/Q336201","display_name":"Confocal","level":2,"score":0.4553000032901764},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4366999864578247},{"id":"https://openalex.org/C147080431","wikidata":"https://www.wikidata.org/wiki/Q1074953","display_name":"Microscopy","level":2,"score":0.4034999907016754},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.39570000767707825},{"id":"https://openalex.org/C136229726","wikidata":"https://www.wikidata.org/wiki/Q327092","display_name":"Biomedical engineering","level":1,"score":0.38350000977516174},{"id":"https://openalex.org/C67649825","wikidata":"https://www.wikidata.org/wiki/Q196538","display_name":"Microscope","level":2,"score":0.33629998564720154},{"id":"https://openalex.org/C120665830","wikidata":"https://www.wikidata.org/wiki/Q14620","display_name":"Optics","level":1,"score":0.3212999999523163},{"id":"https://openalex.org/C9417928","wikidata":"https://www.wikidata.org/wiki/Q1070689","display_name":"Image processing","level":3,"score":0.32100000977516174},{"id":"https://openalex.org/C2778818243","wikidata":"https://www.wikidata.org/wiki/Q899552","display_name":"Optical coherence tomography","level":2,"score":0.3197000026702881},{"id":"https://openalex.org/C88412794","wikidata":"https://www.wikidata.org/wiki/Q902045","display_name":"Confocal laser scanning microscopy","level":2,"score":0.3127000033855438},{"id":"https://openalex.org/C62649853","wikidata":"https://www.wikidata.org/wiki/Q199687","display_name":"Remote sensing","level":1,"score":0.3070000112056732},{"id":"https://openalex.org/C2984499602","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Computer software","level":2,"score":0.28850001096725464},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.2824000120162964},{"id":"https://openalex.org/C121684516","wikidata":"https://www.wikidata.org/wiki/Q7600677","display_name":"Computer graphics (images)","level":1,"score":0.2818000018596649}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.softx.2026.102669","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102669","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:617dd27f7fe046fe844f71698d8bf701","is_oa":true,"landing_page_url":"https://doaj.org/article/617dd27f7fe046fe844f71698d8bf701","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"SoftwareX, Vol 34, Iss , Pp 102669- (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.softx.2026.102669","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102669","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1242988764","display_name":"CSSCCM \u2013 Chromatisches SweptSourceLaserscanning f\u00fcr eine konfokale 3DSpaltlampenmikroskopie der Kornea","funder_award_id":"469107515","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320311048","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":41,"referenced_works":["https://openalex.org/W2001109405","https://openalex.org/W2007163867","https://openalex.org/W2026509607","https://openalex.org/W2035655271","https://openalex.org/W2038687032","https://openalex.org/W2044873071","https://openalex.org/W2060683634","https://openalex.org/W2167279371","https://openalex.org/W2330677971","https://openalex.org/W2332085450","https://openalex.org/W2532415045","https://openalex.org/W2584093155","https://openalex.org/W2621167187","https://openalex.org/W2772699538","https://openalex.org/W2799405016","https://openalex.org/W2799955240","https://openalex.org/W2974605078","https://openalex.org/W3038861244","https://openalex.org/W3089105808","https://openalex.org/W3092005656","https://openalex.org/W3118818727","https://openalex.org/W3125264910","https://openalex.org/W3157042335","https://openalex.org/W3183464282","https://openalex.org/W3217377140","https://openalex.org/W4213070667","https://openalex.org/W4213280283","https://openalex.org/W4229446141","https://openalex.org/W4285297068","https://openalex.org/W4297242527","https://openalex.org/W4300688959","https://openalex.org/W4308560175","https://openalex.org/W4319334035","https://openalex.org/W4366989292","https://openalex.org/W4396621790","https://openalex.org/W4396936470","https://openalex.org/W4400895490","https://openalex.org/W4402815776","https://openalex.org/W4411094401","https://openalex.org/W4413985164","https://openalex.org/W4415137361"],"related_works":[],"abstract_inverted_index":{"In":[0],"vivo":[1],"confocal":[2],"microscopy":[3],"(IVCM)":[4],"provides":[5,87],"high-quality":[6],"image":[7,68],"data":[8],"of":[9,21,23,38,44,46,74],"the":[10,18,24,41,72],"living":[11],"human":[12],"cornea":[13],"with":[14,92],"cellular":[15],"resolution.":[16],"Leveraging":[17],"diagnostic":[19],"potential":[20],"IVCM":[22,48,67,105],"subbasal":[25],"nerve":[26],"plexus":[27],"and":[28,70,86,109],"corneal":[29],"immune":[30],"cells,":[31],"in":[32,119],"particular,":[33],"is":[34,78],"an":[35],"active":[36],"field":[37,43],"research.":[39],"However,":[40],"small":[42],"view":[45],"high-resolution":[47],"represents":[49],"a":[50,79,93],"serious":[51],"limitation":[52],"for":[53,103,115],"many":[54],"possible":[55],"applications.":[56],"The":[57],"presented":[58],"software":[59,85,102],"HIT":[60,77,98],"creates":[61],"motion-corrected":[62],"wide-field":[63],"montages":[64],"from":[65],"large":[66,104],"datasets":[69,106],"overcomes":[71],"shortcomings":[73],"other":[75],"approaches.":[76],"cross-platform,":[80],"open-source":[81],"C":[82],"+":[83,84],"its":[88],"fully":[89],"automated":[90],"workflow":[91],"straightforward":[94],"graphical":[95],"user":[96],"interface.":[97],"makes":[99],"state-of-the-art":[100],"mosaicking":[101],"widely":[107],"available":[108],"opens":[110],"up":[111],"entirely":[112],"new":[113],"opportunities":[114],"all":[116],"research":[117],"groups":[118],"this":[120],"field.":[121]},"counts_by_year":[],"updated_date":"2026-07-14T23:27:15.235271","created_date":"2026-04-26T00:00:00"}