{"id":"https://openalex.org/W7131779117","doi":"https://doi.org/10.1016/j.softx.2026.102581","title":"CMRI Insight: A GUI-based open-source tool for cardiac MRI segmentation and motion tracking application","display_name":"CMRI Insight: A GUI-based open-source tool for cardiac MRI segmentation and motion tracking application","publication_year":2026,"publication_date":"2026-02-27","ids":{"openalex":"https://openalex.org/W7131779117","doi":"https://doi.org/10.1016/j.softx.2026.102581"},"language":"en","primary_location":{"id":"doi:10.1016/j.softx.2026.102581","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102581","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.softx.2026.102581","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5071870858","display_name":"Hamed Aghapanah","orcid":"https://orcid.org/0000-0001-5521-5410"},"institutions":[{"id":"https://openalex.org/I114982161","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56","country_code":"IR","type":"education","lineage":["https://openalex.org/I114982161"]},{"id":"https://openalex.org/I161106909","display_name":"Iran University of Medical Sciences","ror":"https://ror.org/03w04rv71","country_code":"IR","type":"education","lineage":["https://openalex.org/I161106909"]},{"id":"https://openalex.org/I4210157063","display_name":"Shaheed Rajaei Cardiovascular Medical and Research Center","ror":"https://ror.org/054zftm42","country_code":"IR","type":"healthcare","lineage":["https://openalex.org/I4210157063"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hamed Aghapanah","raw_affiliation_strings":["Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran","Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran","institution_ids":["https://openalex.org/I114982161"]},{"raw_affiliation_string":"Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran","institution_ids":["https://openalex.org/I4210157063","https://openalex.org/I161106909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108911365","display_name":"Ali Saeeidi Rad","orcid":null},"institutions":[{"id":"https://openalex.org/I39268498","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759","country_code":"IR","type":"education","lineage":["https://openalex.org/I39268498"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Ali Saeeidi Rad","raw_affiliation_strings":["Department of Biomedical Engineering, Faculty of Engineering, University of Isfahan, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Engineering, University of Isfahan, Isfahan, Iran","institution_ids":["https://openalex.org/I39268498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075800476","display_name":"Reza Rasti","orcid":"https://orcid.org/0000-0003-0010-788X"},"institutions":[{"id":"https://openalex.org/I170897317","display_name":"Duke University","ror":"https://ror.org/00py81415","country_code":"US","type":"education","lineage":["https://openalex.org/I170897317"]},{"id":"https://openalex.org/I39268498","display_name":"University of Isfahan","ror":"https://ror.org/05h9t7759","country_code":"IR","type":"education","lineage":["https://openalex.org/I39268498"]}],"countries":["IR","US"],"is_corresponding":false,"raw_author_name":"Reza Rasti","raw_affiliation_strings":["Department of Biomedical Engineering, Duke University, Durham, NC 27708 USA","Department of Biomedical Engineering, Faculty of Engineering, University of Isfahan, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Engineering, Duke University, Durham, NC 27708 USA","institution_ids":["https://openalex.org/I170897317"]},{"raw_affiliation_string":"Department of Biomedical Engineering, Faculty of Engineering, University of Isfahan, Isfahan, Iran","institution_ids":["https://openalex.org/I39268498"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5126951126","display_name":"Hossein Rabbani","orcid":null},"institutions":[{"id":"https://openalex.org/I114982161","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56","country_code":"IR","type":"education","lineage":["https://openalex.org/I114982161"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hossein Rabbani","raw_affiliation_strings":["Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran","institution_ids":["https://openalex.org/I114982161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049561909","display_name":"Hamidreza Pouraliakbar","orcid":"https://orcid.org/0000-0002-2557-4030"},"institutions":[{"id":"https://openalex.org/I161106909","display_name":"Iran University of Medical Sciences","ror":"https://ror.org/03w04rv71","country_code":"IR","type":"education","lineage":["https://openalex.org/I161106909"]},{"id":"https://openalex.org/I4210157063","display_name":"Shaheed Rajaei Cardiovascular Medical and Research Center","ror":"https://ror.org/054zftm42","country_code":"IR","type":"healthcare","lineage":["https://openalex.org/I4210157063"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hamidreza PourAliakbar","raw_affiliation_strings":["Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Rajaie Cardiovascular Medical and Research Center, Iran University of Medical Sciences, Tehran, Iran","institution_ids":["https://openalex.org/I4210157063","https://openalex.org/I161106909"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045276881","display_name":"Faezeh Tabesh","orcid":"https://orcid.org/0000-0002-0430-6117"},"institutions":[{"id":"https://openalex.org/I114982161","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56","country_code":"IR","type":"education","lineage":["https://openalex.org/I114982161"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Faezeh Tabesh","raw_affiliation_strings":["Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran","institution_ids":["https://openalex.org/I114982161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042681148","display_name":"Hamid Sanei","orcid":"https://orcid.org/0000-0002-3671-8220"},"institutions":[{"id":"https://openalex.org/I114982161","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56","country_code":"IR","type":"education","lineage":["https://openalex.org/I114982161"]}],"countries":["IR"],"is_corresponding":false,"raw_author_name":"Hamid Sanei","raw_affiliation_strings":["Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Cardiovascular Research Institute, Isfahan University of Medical Sciences, Isfahan, Iran","institution_ids":["https://openalex.org/I114982161"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033810284","display_name":"Saeed Kermani","orcid":"https://orcid.org/0000-0003-3339-9532"},"institutions":[{"id":"https://openalex.org/I114982161","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56","country_code":"IR","type":"education","lineage":["https://openalex.org/I114982161"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Saeed Kermani","raw_affiliation_strings":["Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Bioelectrics and Biomedical Engineering, School of Advanced Technologies in Medicine, Isfahan University of Medical Sciences, Isfahan, Iran","institution_ids":["https://openalex.org/I114982161"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5126971105","display_name":"Hossein Arabi","orcid":null},"institutions":[{"id":"https://openalex.org/I4210106256","display_name":"University Hospital of Geneva","ror":"https://ror.org/01m1pv723","country_code":"CH","type":"healthcare","lineage":["https://openalex.org/I4210106256"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Hossein Arabi","raw_affiliation_strings":["Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland"],"raw_orcid":"https://orcid.org/0000-0001-6526-0960","affiliations":[{"raw_affiliation_string":"Division of Nuclear Medicine and Molecular Imaging, Geneva University Hospital, CH-1211, Geneva 4, Switzerland","institution_ids":["https://openalex.org/I4210106256"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5033810284","https://openalex.org/A5126971105"],"corresponding_institution_ids":["https://openalex.org/I114982161","https://openalex.org/I4210106256"],"apc_list":{"value":500,"currency":"USD","value_usd":500},"apc_paid":{"value":500,"currency":"USD","value_usd":500},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.35493888,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"34","issue":null,"first_page":"102581","last_page":"102581"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.2962000072002411,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10052","display_name":"Medical Image Segmentation Techniques","score":0.2962000072002411,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T14510","display_name":"Medical Imaging and Analysis","score":0.12860000133514404,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10378","display_name":"Advanced MRI Techniques and Applications","score":0.05530000105500221,"subfield":{"id":"https://openalex.org/subfields/2741","display_name":"Radiology, Nuclear Medicine and Imaging"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/segmentation","display_name":"Segmentation","score":0.7874000072479248},{"id":"https://openalex.org/keywords/dice","display_name":"Dice","score":0.5837000012397766},{"id":"https://openalex.org/keywords/tracking","display_name":"Tracking (education)","score":0.5612000226974487},{"id":"https://openalex.org/keywords/match-moving","display_name":"Match moving","score":0.503600001335144},{"id":"https://openalex.org/keywords/feature-tracking","display_name":"Feature tracking","score":0.45730000734329224},{"id":"https://openalex.org/keywords/motion","display_name":"Motion (physics)","score":0.4047999978065491},{"id":"https://openalex.org/keywords/image-segmentation","display_name":"Image segmentation","score":0.373199999332428},{"id":"https://openalex.org/keywords/cardiac-magnetic-resonance","display_name":"Cardiac magnetic resonance","score":0.33739998936653137}],"concepts":[{"id":"https://openalex.org/C89600930","wikidata":"https://www.wikidata.org/wiki/Q1423946","display_name":"Segmentation","level":2,"score":0.7874000072479248},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6588000059127808},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6075000166893005},{"id":"https://openalex.org/C22029948","wikidata":"https://www.wikidata.org/wiki/Q45089","display_name":"Dice","level":2,"score":0.5837000012397766},{"id":"https://openalex.org/C31972630","wikidata":"https://www.wikidata.org/wiki/Q844240","display_name":"Computer vision","level":1,"score":0.5741999745368958},{"id":"https://openalex.org/C2775936607","wikidata":"https://www.wikidata.org/wiki/Q466845","display_name":"Tracking (education)","level":2,"score":0.5612000226974487},{"id":"https://openalex.org/C95020103","wikidata":"https://www.wikidata.org/wiki/Q1813492","display_name":"Match moving","level":3,"score":0.503600001335144},{"id":"https://openalex.org/C2987395694","wikidata":"https://www.wikidata.org/wiki/Q557891","display_name":"Feature tracking","level":3,"score":0.45730000734329224},{"id":"https://openalex.org/C104114177","wikidata":"https://www.wikidata.org/wiki/Q79782","display_name":"Motion (physics)","level":2,"score":0.4047999978065491},{"id":"https://openalex.org/C124504099","wikidata":"https://www.wikidata.org/wiki/Q56933","display_name":"Image segmentation","level":3,"score":0.373199999332428},{"id":"https://openalex.org/C2987145844","wikidata":"https://www.wikidata.org/wiki/Q5038325","display_name":"Cardiac magnetic resonance","level":3,"score":0.33739998936653137},{"id":"https://openalex.org/C2776127602","wikidata":"https://www.wikidata.org/wiki/Q5038319","display_name":"Cardiac imaging","level":2,"score":0.3296000063419342},{"id":"https://openalex.org/C3018842581","wikidata":"https://www.wikidata.org/wiki/Q488415","display_name":"Short axis","level":3,"score":0.32409998774528503},{"id":"https://openalex.org/C143409427","wikidata":"https://www.wikidata.org/wiki/Q161238","display_name":"Magnetic resonance imaging","level":2,"score":0.3154999911785126},{"id":"https://openalex.org/C3019060180","wikidata":"https://www.wikidata.org/wiki/Q184199","display_name":"Automated method","level":2,"score":0.3084999918937683},{"id":"https://openalex.org/C9893847","wikidata":"https://www.wikidata.org/wiki/Q1425625","display_name":"Reproducibility","level":2,"score":0.30059999227523804},{"id":"https://openalex.org/C2776845966","wikidata":"https://www.wikidata.org/wiki/Q5038312","display_name":"Cardiac PET","level":3,"score":0.28780001401901245},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2849000096321106},{"id":"https://openalex.org/C157787499","wikidata":"https://www.wikidata.org/wiki/Q13479657","display_name":"Real-time MRI","level":3,"score":0.27959999442100525},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.27379998564720154},{"id":"https://openalex.org/C31601959","wikidata":"https://www.wikidata.org/wiki/Q931309","display_name":"Medical imaging","level":2,"score":0.26269999146461487},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.2583000063896179},{"id":"https://openalex.org/C2776008845","wikidata":"https://www.wikidata.org/wiki/Q5038325","display_name":"Cardiac magnetic resonance imaging","level":3,"score":0.25429999828338623}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.softx.2026.102581","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102581","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.softx.2026.102581","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2026.102581","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320322245","display_name":"Isfahan University of Medical Sciences","ror":"https://ror.org/04waqzz56"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":13,"referenced_works":["https://openalex.org/W2138784249","https://openalex.org/W2161971256","https://openalex.org/W3009563704","https://openalex.org/W3088719758","https://openalex.org/W3109544852","https://openalex.org/W4288438307","https://openalex.org/W4295445031","https://openalex.org/W4382059335","https://openalex.org/W4392856240","https://openalex.org/W4394852429","https://openalex.org/W4402969258","https://openalex.org/W4403770406","https://openalex.org/W4416448876"],"related_works":[],"abstract_inverted_index":{"Cardiac":[0],"MRI":[1],"(CMRI)":[2],"is":[3,14],"crucial":[4],"for":[5,29,66,71,77,92,112],"assessing":[6],"cardiovascular":[7],"structure":[8],"and":[9,16,33,46,58,75,90,99,105],"function,":[10],"yet":[11],"manual":[12],"analysis":[13],"time-consuming":[15],"subjective.":[17],"This":[18],"paper":[19],"introduces":[20],"CMRI":[21,95,114],"Insight,":[22],"an":[23],"open-source,":[24],"Python-based":[25],"GUI":[26],"tool":[27,81],"designed":[28],"automated":[30],"cardiac":[31,102],"segmentation":[32],"motion":[34],"tracking":[35],"like":[36,44],"CardioTrackNet":[37],"in":[38,101],"CMRI.":[39],"Leveraging":[40],"deep":[41],"learning":[42],"models":[43],"CardSegNet":[45],"MECardNet,":[47],"it":[48],"enables":[49],"accurate":[50],"delineation":[51],"of":[52,64],"the":[53,67,72,78],"left":[54,68],"ventricle,":[55,57,69,74],"right":[56,73],"myocardium":[59],"with":[60],"mean":[61],"Dice":[62],"scores":[63],"95.8%":[65],"94.2%":[70],"95.0%":[76],"myocardium.":[79],"The":[80],"offers":[82],"3D":[83],"mesh":[84],"reconstruction,":[85],"strain":[86],"analysis,":[87],"bull\u2019s-eye":[88],"visualization,":[89],"support":[91],"custom":[93],"models.":[94],"Insight":[96],"enhances":[97],"efficiency":[98],"reproducibility":[100],"imaging":[103],"research":[104],"clinical":[106],"evaluation,":[107],"providing":[108],"a":[109],"user-friendly":[110],"platform":[111],"comprehensive":[113],"analysis.":[115]},"counts_by_year":[],"updated_date":"2026-05-05T08:41:31.759640","created_date":"2026-02-27T00:00:00"}
