{"id":"https://openalex.org/W4406315121","doi":"https://doi.org/10.1016/j.softx.2025.102041","title":"Gintegrator: Enhancing biological sequences data integration with real-time identifier translation","display_name":"Gintegrator: Enhancing biological sequences data integration with real-time identifier translation","publication_year":2025,"publication_date":"2025-01-13","ids":{"openalex":"https://openalex.org/W4406315121","doi":"https://doi.org/10.1016/j.softx.2025.102041"},"language":"en","primary_location":{"id":"doi:10.1016/j.softx.2025.102041","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2025.102041","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.softx.2025.102041","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5107461170","display_name":"F. Vazquez de Sola","orcid":"https://orcid.org/0000-0003-1685-3270"},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Fernando Sola","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077771547","display_name":"Daniel Ayala","orcid":"https://orcid.org/0000-0003-2095-1009"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Daniel Ayala","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078163920","display_name":"Marina R. Pulido","orcid":"https://orcid.org/0000-0003-1633-4294"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Marina Pulido","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029762278","display_name":"Rafael Ayala","orcid":"https://orcid.org/0000-0002-9332-4623"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Rafael Ayala","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080263211","display_name":"Lorena L\u00f3pez\u2010Cerero","orcid":"https://orcid.org/0000-0001-8950-4384"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Lorena L\u00f3pez-Cerero","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044105054","display_name":"Inma Hern\u00e1ndez","orcid":"https://orcid.org/0000-0001-8920-6635"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Inma Hern\u00e1ndez","raw_affiliation_strings":[],"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5057698424","display_name":"David Ruiz","orcid":"https://orcid.org/0000-0003-4460-5493"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"David Ruiz","raw_affiliation_strings":[],"affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5107461170"],"corresponding_institution_ids":[],"apc_list":{"value":500,"currency":"USD","value_usd":500},"apc_paid":{"value":500,"currency":"USD","value_usd":500},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.00549011,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"29","issue":null,"first_page":"102041","last_page":"102041"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9977999925613403,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11970","display_name":"Molecular Biology Techniques and Applications","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identifier","display_name":"Identifier","score":0.7711506485939026},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7466390132904053},{"id":"https://openalex.org/keywords/translation","display_name":"Translation (biology)","score":0.6485352516174316},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4118649363517761},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.3415878713130951},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2760504484176636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13159918785095215},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.10131344199180603}],"concepts":[{"id":"https://openalex.org/C154504017","wikidata":"https://www.wikidata.org/wiki/Q853614","display_name":"Identifier","level":2,"score":0.7711506485939026},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7466390132904053},{"id":"https://openalex.org/C149364088","wikidata":"https://www.wikidata.org/wiki/Q185917","display_name":"Translation (biology)","level":4,"score":0.6485352516174316},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4118649363517761},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.3415878713130951},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2760504484176636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13159918785095215},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.10131344199180603},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C105580179","wikidata":"https://www.wikidata.org/wiki/Q188928","display_name":"Messenger RNA","level":3,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.softx.2025.102041","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2025.102041","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},{"id":"pmh:oai:digital.csic.es:10261/391158","is_oa":true,"landing_page_url":"http://hdl.handle.net/10261/391158","pdf_url":null,"source":{"id":"https://openalex.org/S4306400616","display_name":"DIGITAL.CSIC (Spanish National Research Council (CSIC))","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I134820265","host_organization_name":"Consejo Superior de Investigaciones Cient\u00edficas","host_organization_lineage":["https://openalex.org/I134820265"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:doaj.org/article:6e786f258a7d4c5198562dde37cbeb78","is_oa":true,"landing_page_url":"https://doaj.org/article/6e786f258a7d4c5198562dde37cbeb78","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"SoftwareX, Vol 29, Iss , Pp 102041- (2025)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.softx.2025.102041","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.softx.2025.102041","pdf_url":null,"source":{"id":"https://openalex.org/S2506067282","display_name":"SoftwareX","issn_l":"2352-7110","issn":["2352-7110"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"SoftwareX","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320315062","display_name":"Ministerio de Ciencia, Innovaci\u00f3n y Universidades","ror":null},{"id":"https://openalex.org/F4320334923","display_name":"Instituto de Salud Carlos III","ror":"https://ror.org/00ca2c886"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":19,"referenced_works":["https://openalex.org/W2099837668","https://openalex.org/W3003192283","https://openalex.org/W3033870872","https://openalex.org/W3081205391","https://openalex.org/W3116663947","https://openalex.org/W3137279194","https://openalex.org/W3216515691","https://openalex.org/W4220991141","https://openalex.org/W4225590973","https://openalex.org/W4289274885","https://openalex.org/W4294216483","https://openalex.org/W4309220197","https://openalex.org/W4309506674","https://openalex.org/W4319160609","https://openalex.org/W4319759388","https://openalex.org/W4391543515","https://openalex.org/W4402080467","https://openalex.org/W4403052529","https://openalex.org/W6872258871"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W4378651134","https://openalex.org/W4252684102","https://openalex.org/W2608983118","https://openalex.org/W2352307597","https://openalex.org/W1979633005","https://openalex.org/W2163724607","https://openalex.org/W3135403405"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-07T16:01:11.037858","created_date":"2025-10-10T00:00:00"}
