{"id":"https://openalex.org/W2064365281","doi":"https://doi.org/10.1016/j.procs.2012.09.002","title":"Predicting the Evolution of two Genes in the Yeast Saccharomyces Cerevisiae","display_name":"Predicting the Evolution of two Genes in the Yeast Saccharomyces Cerevisiae","publication_year":2012,"publication_date":"2012-01-01","ids":{"openalex":"https://openalex.org/W2064365281","doi":"https://doi.org/10.1016/j.procs.2012.09.002","mag":"2064365281"},"language":"en","primary_location":{"id":"doi:10.1016/j.procs.2012.09.002","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.procs.2012.09.002","pdf_url":null,"source":{"id":"https://openalex.org/S120348307","display_name":"Procedia Computer Science","issn_l":"1877-0509","issn":["1877-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Procedia Computer Science","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"diamond","oa_url":"https://doi.org/10.1016/j.procs.2012.09.002","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106787222","display_name":"Jacques M. Bahi","orcid":null},"institutions":[{"id":"https://openalex.org/I2802759292","display_name":"Franche-Comt\u00e9 \u00c9lectronique M\u00e9canique Thermique et Optique - Sciences et Technologies","ror":"https://ror.org/004fmxv66","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802759292","https://openalex.org/I37553959","https://openalex.org/I4210095849","https://openalex.org/I4405256580","https://openalex.org/I53262699"]},{"id":"https://openalex.org/I90843659","display_name":"Universit\u00e9 de franche-comt\u00e9","ror":"https://ror.org/03pcc9z86","country_code":"FR","type":"education","lineage":["https://openalex.org/I90843659"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Jacques M. Bahi","raw_affiliation_strings":["Institut femto-st","Universit\u00e9 de Franche Comt\u00e9, France"],"affiliations":[{"raw_affiliation_string":"Institut femto-st","institution_ids":["https://openalex.org/I2802759292"]},{"raw_affiliation_string":"Universit\u00e9 de Franche Comt\u00e9, France","institution_ids":["https://openalex.org/I90843659"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033093688","display_name":"Christophe Guyeux","orcid":"https://orcid.org/0000-0003-0195-4378"},"institutions":[{"id":"https://openalex.org/I2802759292","display_name":"Franche-Comt\u00e9 \u00c9lectronique M\u00e9canique Thermique et Optique - Sciences et Technologies","ror":"https://ror.org/004fmxv66","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I2802759292","https://openalex.org/I37553959","https://openalex.org/I4210095849","https://openalex.org/I4405256580","https://openalex.org/I53262699"]},{"id":"https://openalex.org/I90843659","display_name":"Universit\u00e9 de franche-comt\u00e9","ror":"https://ror.org/03pcc9z86","country_code":"FR","type":"education","lineage":["https://openalex.org/I90843659"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Christophe Guyeux","raw_affiliation_strings":["Institut femto-st","Universit\u00e9 de Franche Comt\u00e9, France"],"affiliations":[{"raw_affiliation_string":"Institut femto-st","institution_ids":["https://openalex.org/I2802759292"]},{"raw_affiliation_string":"Universit\u00e9 de Franche Comt\u00e9, France","institution_ids":["https://openalex.org/I90843659"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5019264522","display_name":"Antoine Perasso","orcid":"https://orcid.org/0000-0003-3890-8092"},"institutions":[{"id":"https://openalex.org/I4210104630","display_name":"Laboratoire Chrono-Environnement","ror":"https://ror.org/028cef883","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1314251682","https://openalex.org/I2738703131","https://openalex.org/I2802818602","https://openalex.org/I2802818602","https://openalex.org/I4210102700","https://openalex.org/I4210102700","https://openalex.org/I4210104630","https://openalex.org/I4210107625","https://openalex.org/I4210110412","https://openalex.org/I4210139971","https://openalex.org/I4210155116","https://openalex.org/I4405256580"]},{"id":"https://openalex.org/I90843659","display_name":"Universit\u00e9 de franche-comt\u00e9","ror":"https://ror.org/03pcc9z86","country_code":"FR","type":"education","lineage":["https://openalex.org/I90843659"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Antoine Perasso","raw_affiliation_strings":["Authors in alphabetic order","Laboratoire Chrono-Environnement","Universit\u00e9 de Franche Comt\u00e9, France"],"affiliations":[{"raw_affiliation_string":"Authors in alphabetic order","institution_ids":[]},{"raw_affiliation_string":"Laboratoire Chrono-Environnement","institution_ids":["https://openalex.org/I4210104630"]},{"raw_affiliation_string":"Universit\u00e9 de Franche Comt\u00e9, France","institution_ids":["https://openalex.org/I90843659"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5019264522","https://openalex.org/A5033093688","https://openalex.org/A5106787222"],"corresponding_institution_ids":["https://openalex.org/I2802759292","https://openalex.org/I4210104630","https://openalex.org/I90843659"],"apc_list":null,"apc_paid":null,"fwci":0.1341,"has_fulltext":false,"cited_by_count":3,"citation_normalized_percentile":{"value":0.52475804,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"11","issue":null,"first_page":"4","last_page":"16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9983999729156494,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mutation-rate","display_name":"Mutation rate","score":0.674364447593689},{"id":"https://openalex.org/keywords/saccharomyces-cerevisiae","display_name":"Saccharomyces cerevisiae","score":0.6047655344009399},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.581060528755188},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.5508933663368225},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5459269285202026},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5331043004989624},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.5009880065917969},{"id":"https://openalex.org/keywords/yeast","display_name":"Yeast","score":0.49573835730552673},{"id":"https://openalex.org/keywords/molecular-evolution","display_name":"Molecular evolution","score":0.45092907547950745},{"id":"https://openalex.org/keywords/matrix","display_name":"Matrix (chemical analysis)","score":0.45056596398353577},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4147830903530121},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.41431164741516113},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40964949131011963},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3282940685749054},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.16714146733283997},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.07248196005821228}],"concepts":[{"id":"https://openalex.org/C98638677","wikidata":"https://www.wikidata.org/wiki/Q2067051","display_name":"Mutation rate","level":3,"score":0.674364447593689},{"id":"https://openalex.org/C2777576037","wikidata":"https://www.wikidata.org/wiki/Q719725","display_name":"Saccharomyces cerevisiae","level":3,"score":0.6047655344009399},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.581060528755188},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.5508933663368225},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5459269285202026},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5331043004989624},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.5009880065917969},{"id":"https://openalex.org/C2779222958","wikidata":"https://www.wikidata.org/wiki/Q45422","display_name":"Yeast","level":2,"score":0.49573835730552673},{"id":"https://openalex.org/C166393388","wikidata":"https://www.wikidata.org/wiki/Q856529","display_name":"Molecular evolution","level":4,"score":0.45092907547950745},{"id":"https://openalex.org/C106487976","wikidata":"https://www.wikidata.org/wiki/Q685816","display_name":"Matrix (chemical analysis)","level":2,"score":0.45056596398353577},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4147830903530121},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.41431164741516113},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40964949131011963},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3282940685749054},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.16714146733283997},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.07248196005821228},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.procs.2012.09.002","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.procs.2012.09.002","pdf_url":null,"source":{"id":"https://openalex.org/S120348307","display_name":"Procedia Computer Science","issn_l":"1877-0509","issn":["1877-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Procedia Computer Science","raw_type":"journal-article"},{"id":"pmh:oai:HAL:hal-00786207v1","is_oa":true,"landing_page_url":"https://hal.science/hal-00786207","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Procedia Computer Science, 2012, 11, pp.4-16. &#x27E8;10.1016/j.procs.2012.09.002&#x27E9;","raw_type":"Journal articles"}],"best_oa_location":{"id":"doi:10.1016/j.procs.2012.09.002","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.procs.2012.09.002","pdf_url":null,"source":{"id":"https://openalex.org/S120348307","display_name":"Procedia Computer Science","issn_l":"1877-0509","issn":["1877-0509"],"is_oa":true,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Procedia Computer Science","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.6200000047683716,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":22,"referenced_works":["https://openalex.org/W1525734744","https://openalex.org/W1928030931","https://openalex.org/W1974521908","https://openalex.org/W1976571223","https://openalex.org/W2002119391","https://openalex.org/W2009596137","https://openalex.org/W2012393721","https://openalex.org/W2015557145","https://openalex.org/W2026551295","https://openalex.org/W2037471729","https://openalex.org/W2059271683","https://openalex.org/W2065461553","https://openalex.org/W2084254667","https://openalex.org/W2101354844","https://openalex.org/W2110451776","https://openalex.org/W2126556083","https://openalex.org/W2144775551","https://openalex.org/W2164541214","https://openalex.org/W3110585999","https://openalex.org/W4232020260","https://openalex.org/W6636572369","https://openalex.org/W6657049243"],"related_works":["https://openalex.org/W2028107853","https://openalex.org/W1982584572","https://openalex.org/W4210617669","https://openalex.org/W4232406862","https://openalex.org/W2397070560","https://openalex.org/W2146397496","https://openalex.org/W2076383445","https://openalex.org/W2592888218","https://openalex.org/W2136281516","https://openalex.org/W2025340064"],"abstract_inverted_index":{"Since":[0],"the":[1,13,20,34,56,67,76,97,103,106,121,143,162,166,176,188,194],"late":[2],"\u201860s,":[3],"various":[4],"genome":[5],"evolutionary":[6],"models":[7,29,58,95],"have":[8,134,155],"been":[9,135],"proposed":[10],"to":[11,102,184],"predict":[12],"evolution":[14,77,98,164,189],"of":[15,27,47,59,78,85,93,99,105,109,142,152,165,172,179,190],"a":[16,44,83,110],"DNA":[17,100],"sequence":[18],"as":[19],"generations":[21],"pass.":[22],"Essentially,":[23],"two":[24,140,157,170,195],"main":[25],"categories":[26],"such":[28],"can":[30],"be":[31],"found":[32],"in":[33],"literature.":[35],"The":[36],"first":[37],"one,":[38],"based":[39],"on":[40,139],"nucleotides":[41],"evolution,":[42],"uses":[43],"mutation":[45,111,131,159],"matrix":[46,84,123],"size":[48,86],"4":[49],"\u00d7":[50,88],"4.":[51],"It":[52],"encompasses":[53],"for":[54,120,169,193],"instance":[55],"well-known":[57],"Jukes":[60],"and":[61,64,74,181,186],"Cantor,":[62],"Kimura,":[63],"Tamura.":[65],"In":[66],"second":[68],"category,":[69],"exclusively":[70],"studied":[71,81],"by":[72],"Bahi":[73],"Michel,":[75],"trinucleotides":[79],"is":[80],"through":[82],"64":[87],"64.":[89],"By":[90],"essence,":[91],"all":[92],"these":[94],"relate":[96],"sequences":[101],"computation":[104,116],"successive":[107],"powers":[108],"matrix.":[112],"To":[113],"make":[114],"this":[115,148,153,173],"possible,":[117],"particular":[118,177],"forms":[119],"mu-tation":[122],"are":[124,127],"assumed,":[125],"which":[126],"not":[128],"compatible":[129],"with":[130],"rates":[132],"that":[133],"recently":[136],"obtained":[137],"experimentally":[138],"genes":[141,171,196],"Yeast":[144],"Saccharomyces":[145],"cerevisiae.":[146],"Using":[147],"experimental":[149],"study,":[150],"authors":[151],"paper":[154],"deduced":[156],"simple":[158],"matrices,":[160],"compute":[161],"future":[163],"rate":[167],"purine/pyrimidine":[168],"yeast,":[174],"investigate":[175],"behavior":[178],"cytosines":[180],"thymines":[182],"compared":[183],"purines,":[185],"simulate":[187],"each":[191],"nucleotide":[192],"under":[197],"interest.":[198]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-14T08:43:22.919905","created_date":"2025-10-10T00:00:00"}
