{"id":"https://openalex.org/W4221107583","doi":"https://doi.org/10.1016/j.patter.2022.100466","title":"A hybrid approach for identifying drug repurposing candidates and their mechanisms: An interview with Vanessa Lage-Rupprecht and two co-authors","display_name":"A hybrid approach for identifying drug repurposing candidates and their mechanisms: An interview with Vanessa Lage-Rupprecht and two co-authors","publication_year":2022,"publication_date":"2022-03-01","ids":{"openalex":"https://openalex.org/W4221107583","doi":"https://doi.org/10.1016/j.patter.2022.100466","pmid":"https://pubmed.ncbi.nlm.nih.gov/35510189"},"language":"en","primary_location":{"id":"doi:10.1016/j.patter.2022.100466","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2022.100466","pdf_url":"http://www.cell.com/article/S2666389922000460/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.cell.com/article/S2666389922000460/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5078369553","display_name":"Vanessa Lage\u2010Rupprecht","orcid":"https://orcid.org/0000-0003-1374-8184"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Vanessa Lage-Rupprecht","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091508214","display_name":"Bruce Schultz","orcid":"https://orcid.org/0000-0003-4492-9463"},"institutions":[{"id":"https://openalex.org/I4210098248","display_name":"Fraunhofer Institute for Algorithms and Scientific Computing","ror":"https://ror.org/00trw9c49","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210098248","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Bruce Schultz","raw_affiliation_strings":["Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Algorithms and Scientific Computing SCAI, Department of Bioinformatics, Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210098248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084431990","display_name":"Marcin Namys\u0142","orcid":"https://orcid.org/0000-0001-7066-1726"},"institutions":[{"id":"https://openalex.org/I4210144576","display_name":"Fraunhofer Institute for Intelligent Analysis and Information Systems","ror":"https://ror.org/04nc32781","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210144576","https://openalex.org/I4923324"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marcin Namysl","raw_affiliation_strings":["Fraunhofer Institute for Intelligent Analysis and Information Systems IAIS, NetMedia Department, Schloss Birlinghoven, 53757 Sankt Augustin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Fraunhofer Institute for Intelligent Analysis and Information Systems IAIS, NetMedia Department, Schloss Birlinghoven, 53757 Sankt Augustin, Germany","institution_ids":["https://openalex.org/I4210144576"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5078369553"],"corresponding_institution_ids":["https://openalex.org/I4210098248"],"apc_list":{"value":5200,"currency":"USD","value_usd":5200},"apc_paid":{"value":5200,"currency":"USD","value_usd":5200},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.05323111,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"3","issue":"3","first_page":"100466","last_page":"100466"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10932","display_name":"Microbial Metabolic Engineering and Bioproduction","score":0.9682000279426575,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.817754328250885},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.5853638648986816},{"id":"https://openalex.org/keywords/repurposing","display_name":"Repurposing","score":0.48139333724975586},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.40270841121673584},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.35964393615722656},{"id":"https://openalex.org/keywords/psychiatry","display_name":"Psychiatry","score":0.13565677404403687},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.1317863166332245}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.817754328250885},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.5853638648986816},{"id":"https://openalex.org/C519536355","wikidata":"https://www.wikidata.org/wiki/Q21021151","display_name":"Repurposing","level":2,"score":0.48139333724975586},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.40270841121673584},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.35964393615722656},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.13565677404403687},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.1317863166332245},{"id":"https://openalex.org/C548081761","wikidata":"https://www.wikidata.org/wiki/Q180388","display_name":"Waste management","level":1,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.patter.2022.100466","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2022.100466","pdf_url":"http://www.cell.com/article/S2666389922000460/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},{"id":"pmid:35510189","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35510189","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns (New York, N.Y.)","raw_type":null},{"id":"pmh:oai:publica.fraunhofer.de:publica/428549","is_oa":false,"landing_page_url":"https://publica.fraunhofer.de/handle/publica/428549","pdf_url":null,"source":{"id":"https://openalex.org/S4306400318","display_name":"Fraunhofer-Publica (Fraunhofer-Gesellschaft)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4923324","host_organization_name":"Fraunhofer-Gesellschaft","host_organization_lineage":["https://openalex.org/I4923324"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"journal article"},{"id":"pmh:oai:pubmedcentral.nih.gov:9058869","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/9058869","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Patterns (N Y)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/j.patter.2022.100466","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2022.100466","pdf_url":"http://www.cell.com/article/S2666389922000460/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":false},"content_urls":{"pdf":"https://content.openalex.org/works/W4221107583.pdf"},"referenced_works_count":3,"referenced_works":["https://openalex.org/W2740614417","https://openalex.org/W2976060980","https://openalex.org/W4210252045"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W2899096130","https://openalex.org/W3190782215","https://openalex.org/W2902729297","https://openalex.org/W3110500039","https://openalex.org/W4206422705","https://openalex.org/W4255531208","https://openalex.org/W4320009247","https://openalex.org/W3186872001","https://openalex.org/W3174741986"],"abstract_inverted_index":{"Senior":[0,60],"researcher":[1,61],"Vanessa":[2,62,120,1473],"Lage-Rupprecht":[3,63,1474],"and":[4,15,24,50,64,75,84,110,138,181,209,216,248,267,323,335,356,375,391,417,434,448,457,477,494,541,565,579,672,677,700,722,841,858,882,890,910,930,952,974,987,1019,1027,1034,1080,1110,1128,1202,1211,1219,1232,1284,1298,1329,1356,1422,1447,1454,1508,1522,1540,1549,1561,1588,1648,1658,1670,1690,1697,1717,1730,1734,1747],"two":[5,65,719,1397],"collaborators":[6,66,1056],"talk":[7,67],"about":[8,68,262,301,431],"what":[9,69,297,1046,1074,1081,1286],"data":[10,23,45,70,83,105,189,233,247,266,806,814,925,973,1039,1048,1077,1127,1196,1245,1275,1297,1560,1659],"science":[11,71,190,721,725,1049,1197,1246,1339,1395,1580,1630,1676],"means":[12,72],"to":[13,20,57,73,80,117,161,188,195,264,271,351,370,410,441,462,554,643,729,733,736,824,874,883,919,980,988,1001,1012,1020,1044,1068,1159,1282,1291,1306,1321,1326,1332,1352,1367,1386,1438,1443,1458,1460,1608,1625,1650],"them":[14,74,212,1317],"illustrate":[16,76],"how":[17,77],"they":[18,40,78,100,1259],"managed":[19,79],"create":[21,81,1455],"a":[22,43,55,82,103,115,171,206,223,235,310,317,352,358,395,424,469,473,478,547,590,716,798,876,902,978,998,1014,1038,1251,1274,1302,1342,1382,1400,1416,1450,1476,1543,1554,1566,1577,1664,1671,1714],"lab":[25,85,892],"coexistence":[26,86],"in":[27,35,87,95,131,141,153,159,179,226,230,333,342,360,482,569,606,629,636,703,748,831,861,906,1005,1017,1101,1164,1179,1195,1301,1358,1403,1487,1493,1500,1512,1534,1581,1595,1631,1638,1674,1687,1699],"their":[28,88,139,701,1060,1256,1279],"drug-repurposing":[29,89],"project,":[30,90,715],"which":[31,91,294,404,459],"was":[32,92,193,331,408,624,745,960,1287],"recently":[33,93,746],"published":[34,94,630,747,898,1119],"Patterns.":[36,96],"In":[37,97,497,608,713,740,1227,1573],"this":[38,98,528],"article,":[39,99],"have":[41,51,101,111,175,1013,1260,1341],"developed":[42,102],"drug-target-mechanism-oriented":[44,104,813],"model,":[46,106,815],"Human":[47,107,817],"Brain":[48,108,818],"PHARMACOME,":[49,109],"presented":[52,112],"it":[53,113,283,912,1300,1461],"as":[54,114,257,309,524,589,1113,1115,1199,1349,1362,1364,1413,1415,1542,1713],"resource":[56,116,426],"the":[58,118,132,149,154,163,196,217,244,249,258,321,385,412,455,506,534,542,556,560,563,573,598,602,614,637,816,825,832,855,865,885,915,964,967,982,1031,1042,1055,1063,1070,1082,1116,1126,1129,1137,1145,1156,1160,1171,1177,1180,1186,1216,1239,1244,1270,1293,1426,1445,1466,1471,1490,1504,1523,1535,1557,1584,1600,1616,1634,1653,1678,1739],"community.":[59,119,1247],"Lage-Rupprecht:":[121],"At":[122,1528],"Fraunhofer":[123,314,415,1480,1529,1570,1644,1668],"SCAI":[124,315,416,1481,1530,1571],"Bioinformatics,":[125],"I":[126,169,174,186,192,254,306,346,407,467,485,499,1096,1122,1315,1377,1389],"use":[127,1316],"my":[128,349,365,379,1165,1174,1228,1323,1334,1359],"neuroscientific":[129],"expertise":[130],"generation":[133],"of":[134,151,156,165,198,219,246,325,364,381,508,539,546,562,592,601,616,639,669,675,694,800,807,827,839,869,879,888,904,923,937,941,966,984,1053,1076,1085,1104,1144,1167,1173,1204,1222,1238,1296,1345,1419,1525,1537,1559,1579,1586,1619,1629,1636,1680,1695,1708,1741],"formalized":[135,326],"knowledge":[136,152,250,269,327,795,928],"graphs":[137],"application":[140,324],"translational":[142],"approaches.":[143,168],"My":[144,329],"main":[145],"focus":[146,319,1555],"is":[147,284,295,300,367,383,398,405,537,549,913,997,1010,1050,1236,1269,1311,1475,1565,1663,1723,1735],"on":[148,243,320,420,454,502,512,854,864,1380,1425,1465,1556,1615,1737],"discovery":[150],"field":[155,237,1183,1536],"neurodegenerative":[157,436],"diseases":[158],"order":[160,545],"advance":[162],"development":[164,322,1178],"new":[166,372,731,862,908,932,939,1087],"therapeutic":[167,1006],"became":[170],"scientist":[172,312,471,1253,1276,1478,1568,1666],"because":[173,191,282],"always":[176],"been":[177,1261],"interested":[178],"researching":[180],"understanding":[182,668,1073,1418],"complex":[183,580],"biological":[184,443,880,1252,1656],"interactions.":[185,956],"moved":[187],"attracted":[194],"idea":[197],"putting":[199],"findings":[200,847],"from":[201,252,515,627,648,797,1062,1583,1633],"experimental":[202,804,1093,1501],"research":[203,292,311,444,470,488,1102,1147,1175,1207,1235,1477,1511,1567,1598,1665,1725],"studies":[204,863],"into":[205,811,1155],"big":[207,224],"picture":[208],"looking":[210],"at":[211,239,313,414,1479,1489,1503,1515,1569,1599,1643,1677,1692],"holistically.":[213],"Professor":[214],"Hofmann-Apitius":[215],"philosophy":[218],"his":[220,1620,1627,1684,1702],"department":[221],"played":[222],"part":[225],"making":[227],"me":[228,553,1152,1185],"fall":[229],"love":[231,380],"with":[232,316,394,472,620,653,802,1023,1099,1149,1553,1591],"science,":[234],"multifaceted":[236],"that,":[238],"its":[240],"core,":[241],"focuses":[242],"extraction":[245,510,567,1743],"derived":[251],"it.":[253],"see":[255],"myself":[256],"one":[259,723,856,1237,1437],"who":[260],"thinks":[261],"concepts":[263],"bring":[265],"domain":[268],"together":[270],"establish":[272,730],"dedicated":[273,369],"data-mining":[274],"workflows.":[275],"We":[276,917,992],"chose":[277],"Patterns":[278],"for":[279,288,339,401,422,504,558,691,697,943,963,1243,1263,1667,1745],"our":[280,298,609,617,714,741,812,870,896,921,927],"submission":[281],"an":[285,402,778,1404],"excellent":[286],"platform":[287],"sharing":[289],"novel":[290],"interdisciplinary":[291],"ideas,":[293],"exactly":[296],"work":[299,308,366,1427,1605],"(Figure":[302],"1).":[303],"Bruce":[304,1563,1640],"Schultz:":[305],"currently":[307],"strong":[318,1401],"graphs.":[328],"background":[330,476],"initially":[332],"biochemistry":[334,1582],"immunology,":[336],"having":[337],"worked":[338,1590],"several":[340,1431],"years":[341,1707],"HIV":[343,1596],"vaccine":[344,1597],"research.":[345,1007],"then":[347],"pivoted":[348],"career":[350],"more":[353,446],"data-oriented":[354],"direction":[355],"obtained":[357,1576],"MSc":[359],"bioinformatics.":[361],"Though":[362,895],"most":[363,1032,1161,1240],"now":[368,1641],"writing":[371],"software":[373,474,1715],"packages":[374],"developing":[376,1381,1646],"computational":[377,618,889],"algorithms,":[378],"biology":[382,1488],"still":[384],"primary":[386],"focus.":[387],"Understanding":[388],"every":[389],"facet":[390],"mechanism":[392],"associated":[393],"given":[396],"pathology":[397],"incredibly":[399],"difficult":[400],"individual,":[403],"why":[406],"excited":[409],"join":[411],"team":[413],"begin":[418],"working":[419,1379,1712],"methods":[421,503,933],"creating":[423],"comprehensive":[425],"encompassing":[427],"everything":[428],"we":[429,439,612,727,793],"know":[430],"Alzheimer":[432,640,649,779,833],"disease":[433,641,699,834],"other":[435,1192,1432],"disorders.":[437],"Ultimately,":[438],"seek":[440],"make":[442],"much":[445],"focused":[447,501,803],"efficient":[449,1212],"by":[450,596,1106,1136,1711],"providing":[451],"evidence-based":[452],"insights":[453,909,1088,1154],"targets":[456],"pathways":[458],"are":[460,522,680,849,1030,1078,1089,1190,1430,1462],"likely":[461,949],"provide":[463,901],"results.":[464,991],"Marcin":[465,1661],"Namysl:":[466],"am":[468,486,500,1378],"engineering":[475,1689],"PhD":[479,1499,1672],"candidate":[480,1673],"majoring":[481],"computer":[483,720,1675,1718],"science.":[484],"doing":[487,1724],"that":[489,623,744,848,994,1090,1131,1214,1258,1273,1434,1726],"involves":[490],"natural":[491,593,1731],"language":[492,594,1407,1732],"processing":[493,1733],"pattern":[495,1728],"recognition.":[496,1749],"particular,":[498],"improving":[505,559,1738],"robustness":[507,561,1182,1740],"information":[509,622,1742],"performed":[511],"input":[513,535,574],"documents":[514,584],"diverse":[516],"domains.":[517],"Although":[518],"many":[519,1191],"information-extraction":[520],"tasks":[521],"regarded":[523],"largely":[525],"solved":[526],"problems,":[527],"assumption":[529],"only":[530,914,936],"holds":[531],"true":[532],"if":[533],"text":[536],"free":[538],"errors":[540,578],"correct":[543],"reading":[544,1107],"document":[548],"preserved.":[550],"This":[551],"motivated":[552],"investigate":[555,875],"approaches":[557],"entity":[564,1746],"table":[566,1748],"systems":[568,1744],"real-world":[570],"scenarios,":[571],"where":[572,1611],"may":[575],"contain":[576],"digitization":[577],"layout":[581],"elements.":[582],"Such":[583],"cannot":[585],"be":[586],"simply":[587],"serialized":[588],"sequence":[591],"tokens":[595],"ignoring":[597],"inherent":[599],"structure":[600],"data,":[603],"e.g.,":[604,1004],"contained":[605],"tables.":[607],"current":[610],"work,":[611],"complemented":[613],"enrichment":[615],"model":[619,1385],"quantitative":[621,924],"automatically":[625],"extracted":[626],"tables":[628],"biomedical":[631,1547],"manuscripts.":[632],"VLR:":[633,836,957,1008],"Clinical":[634,651],"trials":[635,693],"context":[638],"continue":[642,884],"fail.1Cummings":[644],"J.":[645,754,764],"Lessons":[646],"Learned":[647],"Disease:":[650],"Trials":[652],"Negative":[654],"Outcomes.Clin.":[655],"Transl.":[656],"Sci.":[657],"2018;":[658],"11:":[659],"147-152Crossref":[660],"PubMed":[661],"Scopus":[662,709,789],"(150)":[663],"Google":[664,711,791],"Scholar":[665,712,792],"An":[666],"incomplete":[667],"pathophysiological":[670],"mechanisms":[671],"erroneous":[673],"selection":[674],"target":[676],"drug":[678,774,809,955],"candidates":[679,776,810,830],"partial":[681],"reasons.2Yiannopoulou":[682],"K.G.":[683],"Anastasiou":[684],"A.I.":[685],"Zachariou":[686],"V.":[687,750],"Pelidou":[688],"S.H.":[689],"Reasons":[690],"failed":[692],"disease-modifying":[695],"treatments":[696],"alzheimer":[698],"contribution":[702],"recent":[704],"research.Biomedicines.":[705],"2019;":[706],"7:":[707],"97Crossref":[708],"(88)":[710],"collaboration":[717,959,996],"between":[718,972,1546,1655],"life":[724],"institute,":[726],"aimed":[728],"ways":[732],"repurpose":[734],"drugs":[735],"overcome":[737,1002],"these":[738],"shortcomings.":[739],"holistic":[742],"approach":[743,772,871,897],"Patterns,3Lage-Rupprecht":[749],"Schultz":[751,1564],"B.":[752,766],"Dick":[753],"Namysl":[755,1662],"M.":[756],"Zaliani":[757],"A.":[758],"Gebel":[759],"S.":[760],"Pless":[761],"O.":[762],"Reinshagen":[763],"Ellinger":[765],"Ebeling":[767],"C.":[768],"et":[769],"al.A":[770],"hybrid":[771],"unveils":[773],"repurposing":[775,829],"targeting":[777],"pathophysiology":[780],"mechanism.Patterns.":[781],"2022;":[782],"3https://doi.org/10.1016/j.patter.2022.100466Abstract":[783],"Full":[784,786],"Text":[785,787],"PDF":[788],"(1)":[790],"combined":[794],"mined":[796],"variety":[799,1344],"sources":[801],"screening":[805],"selected":[808],"PHARMACOME":[819],"(HBP).":[820],"Mutual":[821],"analysis":[822,843],"led":[823],"identification":[826],"interesting":[828,1193],"context.":[835],"Our":[837],"interplay":[838],"in-silico":[840],"in-vitro":[842],"has":[844],"yielded":[845],"far-reaching":[846],"being":[850,1350,1365,1441],"further":[851,1153],"explored":[852],"experimentally":[853],"hand":[857],"taken":[859],"up":[860],"other.":[866,1025],"The":[867,958,969,1249],"generalizability":[868],"allows":[872],"us":[873],"wide":[877,1343],"range":[878],"questions":[881,1242],"successful":[886],"symbiosis":[887],"wet":[891],"work.":[893],"BS:":[894,1248,1337,1393],"here":[899],"will":[900],"lot":[903,979],"utility":[905],"generating":[907],"hypotheses,":[911],"beginning.":[916],"wish":[918],"improve":[920],"integration":[922],"within":[926,1449],"graph":[929],"develop":[931],"capable":[934,1052],"not":[935,1058,1141],"pinpointing":[938],"modes":[940],"action":[942],"drugs,":[944],"but":[945,1140,1440],"also":[946],"predicting":[947],"dosages,":[948],"side":[950],"effects,":[951],"even":[953],"unknown":[954],"enormously":[961],"important":[962,1011,1033],"success":[965],"paper.":[968],"mutual":[970,1028],"exchange":[971],"laboratory":[975],"scientists":[976],"helped":[977],"identify":[981,1307,1353],"needs":[983],"both":[985,1420],"sides":[986],"achieve":[989],"optimal":[990],"believe":[993],"cross-domain":[995],"groundbreaking":[999],"concept":[1000],"limitations,":[1003],"It":[1009],"common":[1015],"goal":[1016],"mind":[1018],"continuously":[1021],"consult":[1022],"each":[1024],"Communication":[1026],"feedback":[1029],"limiting":[1035],"factors.":[1036],"As":[1037],"scientist,":[1040],"take":[1041,1292],"time":[1043],"explain":[1045],"modern":[1047],"already":[1051],"so":[1054],"do":[1057],"limit":[1059],"ideas":[1061],"start.":[1064],"Vice":[1065],"versa,":[1066],"try":[1067],"get":[1069,1626],"best":[1071],"possible":[1072,1086],"types":[1075],"relevant":[1079],"key":[1083],"areas":[1084,1103],"could":[1091],"drive":[1092],"progress.":[1094],"MN:":[1095,1169,1313],"keep":[1097],"updated":[1098],"advances":[1100,1148],"interest":[1105],"conference":[1108],"proceedings":[1109],"journal":[1111],"issues":[1112,1448],"well":[1114,1363,1414],"latest":[1117,1146],"preprints":[1118],"online.":[1120,1392],"Moreover,":[1121,1188],"enjoy":[1123,1391],"going":[1124],"through":[1125],"code":[1130,1280],"were":[1132],"made":[1133],"publicly":[1134],"available":[1135],"authors.":[1138],"Last":[1139],"least,":[1142],"discussion":[1143],"peers":[1150],"gives":[1151],"up-to-date":[1157],"solutions":[1158,1213],"pressing":[1162,1241],"problems":[1163],"fields":[1166],"interest.":[1168],"From":[1170],"perspective":[1172],"interests,":[1176],"adversarial":[1181],"excites":[1184],"most.":[1187],"there":[1189,1429],"trends":[1194],"such":[1198,1348],"fostering":[1200],"interpretability":[1201],"reproducibility":[1203],"machine":[1205,1383],"learning":[1206,1384],"or":[1208,1331],"promoting":[1209],"sustainable":[1210],"reduce":[1215],"carbon":[1217],"footprint":[1218],"financial":[1220],"cost":[1221],"running":[1223],"computationally":[1224],"expensive":[1225],"experiments.":[1226],"opinion,":[1229],"advocating":[1230],"responsible":[1231],"ethical":[1233],"AI":[1234],"rush":[1250],"gets":[1254],"when":[1255,1278],"experiment":[1257],"troubleshooting":[1262],"months":[1264],"finally":[1265],"produces":[1266],"meaningful":[1267,1456],"results":[1268],"same":[1271,1294],"elation":[1272],"feels":[1277],"runs":[1281],"completion":[1283],"returns":[1285],"expected.":[1288],"Being":[1289],"able":[1290,1351,1366,1442],"collection":[1295],"manipulate":[1299],"creative,":[1303],"logical":[1304],"way":[1305],"new,":[1308],"useful":[1309],"patterns":[1310],"invigorating.":[1312],"Actually,":[1314],"quite":[1318],"often,":[1319],"especially":[1320,1371],"manage":[1322],"finances,":[1324],"i.e.,":[1325],"analyze":[1327],"incomes":[1328],"expenses,":[1330],"track":[1333],"fitness":[1335],"activities.":[1336],"Data":[1338,1394],"skills":[1340,1467],"day-to-day":[1346],"applications":[1347,1355,1649],"troublesome":[1354],"bottlenecks":[1357],"home":[1360],"network":[1361],"automate":[1368],"repetitive":[1369],"tasks,":[1370],"those":[1372],"involving":[1373],"Excel":[1374],"spreadsheets.":[1375],"Currently,":[1376],"find":[1387,1444],"recipes":[1388],"would":[1390],"requires":[1396],"major":[1398],"skills:":[1399],"foundation":[1402],"applicable":[1405],"programming":[1406],"(Python,":[1408],"R,":[1409],"Julia,":[1410],"Java,":[1411],"etc.)":[1412],"decent":[1417],"mathematics":[1421],"statistics.":[1423],"Depending":[1424],"environment,":[1428],"factors":[1433],"can":[1435],"help":[1436,1651],"succeed,":[1439],"faults":[1446],"dataset,":[1451],"fix":[1452],"them,":[1453],"algorithms":[1457],"apply":[1459],"highly":[1463],"dependent":[1464],"mentioned":[1468],"above.":[1469],"About":[1470],"authors":[1472],"Bioinformatics.":[1482,1572],"After":[1483,1701],"receiving":[1484],"her":[1485,1498,1510],"diploma":[1486],"Rheinische":[1491],"Friedrich-Wilhelm-University":[1492],"Bonn":[1494,1507,1637],"(Germany),":[1495],"she":[1496,1532],"received":[1497],"neurophysiology":[1502],"University":[1505,1524,1585,1635,1679,1694],"Hospital":[1506],"continued":[1509],"cellular":[1513],"neuroscience":[1514],"McGovern":[1516],"Medical":[1517],"School":[1518],"(Houston,":[1519],"TX,":[1520],"USA)":[1521],"Regensburg":[1526],"(Germany).":[1527],"Bioinformatics":[1531],"works":[1533,1642],"applied":[1538],"semantics":[1539],"operates":[1541],"bridge":[1544,1652],"builder":[1545],"domains":[1548],"informatics":[1550],"implementation":[1551],"strategies":[1552],"interoperability":[1558],"knowledge.":[1562],"2012,":[1574],"he":[1575,1612,1704,1722],"bachelor":[1578],"Michigan":[1587],"thereafter":[1589],"Dr.":[1592],"Hendrik":[1593],"Streeck":[1594],"Henry":[1601],"Jackson":[1602],"Foundation.":[1603],"His":[1604],"took":[1606],"him":[1607,1624],"Essen,":[1609],"Germany,":[1610],"began":[1613],"focusing":[1614,1736],"data-science":[1617],"aspect":[1618],"research,":[1621],"thus":[1622],"leading":[1623],"master":[1628],"bioinformatics":[1632],"2019.":[1639],"SCAI,":[1645],"tools":[1647],"gap":[1654],"researchers":[1657],"scientists.":[1660],"IAIS":[1669],"Bonn.":[1681],"He":[1682],"completed":[1683],"master\u2019s":[1685],"degree":[1686],"control":[1688],"robotics":[1691],"Wroclaw":[1693],"Science":[1696],"Technology":[1698],"2008.":[1700],"graduation,":[1703],"gained":[1705],"nine":[1706],"industry":[1709],"experience":[1710],"engineer":[1716],"vision":[1719],"expert.":[1720],"Now":[1721],"bridges":[1727],"recognition":[1729]},"counts_by_year":[],"updated_date":"2026-05-22T06:13:13.366637","created_date":"2025-10-10T00:00:00"}
