{"id":"https://openalex.org/W3096856821","doi":"https://doi.org/10.1016/j.patter.2020.100138","title":"A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics","display_name":"A Blueprint for Identifying Phenotypes and Drug Targets in Complex Disorders with Empirical Dynamics","publication_year":2020,"publication_date":"2020-11-06","ids":{"openalex":"https://openalex.org/W3096856821","doi":"https://doi.org/10.1016/j.patter.2020.100138","mag":"3096856821","pmid":"https://pubmed.ncbi.nlm.nih.gov/33336196"},"language":"en","primary_location":{"id":"doi:10.1016/j.patter.2020.100138","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100138","pdf_url":"http://www.cell.com/article/S2666389920301860/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.cell.com/article/S2666389920301860/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064555836","display_name":"Madison S. Krieger","orcid":"https://orcid.org/0000-0001-8967-0841"},"institutions":[{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Madison S. Krieger","raw_affiliation_strings":["Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA"],"raw_orcid":"https://orcid.org/0000-0001-8967-0841","affiliations":[{"raw_affiliation_string":"Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA","institution_ids":["https://openalex.org/I136199984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103036004","display_name":"J. Moreau","orcid":"https://orcid.org/0000-0002-1227-1508"},"institutions":[{"id":"https://openalex.org/I180670191","display_name":"University of California, San Francisco","ror":"https://ror.org/043mz5j54","country_code":"US","type":"education","lineage":["https://openalex.org/I180670191"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Joshua M. Moreau","raw_affiliation_strings":["Department of Dermatology, University of California, San Francisco, CA, USA"],"raw_orcid":"https://orcid.org/0000-0002-1227-1508","affiliations":[{"raw_affiliation_string":"Department of Dermatology, University of California, San Francisco, CA, USA","institution_ids":["https://openalex.org/I180670191"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5119012043","display_name":"Haiyu Zhang","orcid":"https://orcid.org/0000-0003-3627-7477"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Haiyu Zhang","raw_affiliation_strings":["Department of Pathology, Stanford School of Medicine, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Pathology, Stanford School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I4210137306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027783019","display_name":"May Chien","orcid":null},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"May Chien","raw_affiliation_strings":["Department of Medicine (Hematology), Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine (Hematology), Stanford, CA, USA","institution_ids":["https://openalex.org/I4210137306"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014659823","display_name":"James L. Zehnder","orcid":"https://orcid.org/0000-0002-5380-303X"},"institutions":[{"id":"https://openalex.org/I4210137306","display_name":"Stanford Medicine","ror":"https://ror.org/03mtd9a03","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I4210137306","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James L. Zehnder","raw_affiliation_strings":["Department of Medicine (Hematology), Stanford, CA, USA","Department of Pathology, Stanford School of Medicine, Stanford, CA, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine (Hematology), Stanford, CA, USA","institution_ids":["https://openalex.org/I4210137306"]},{"raw_affiliation_string":"Department of Pathology, Stanford School of Medicine, Stanford, CA, USA","institution_ids":["https://openalex.org/I4210137306"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5006094579","display_name":"Morgan Craig","orcid":"https://orcid.org/0000-0003-4852-4770"},"institutions":[{"id":"https://openalex.org/I2802351361","display_name":"Centre Hospitalier Universitaire Sainte-Justine","ror":"https://ror.org/01gv74p78","country_code":"CA","type":"healthcare","lineage":["https://openalex.org/I2802351361"]},{"id":"https://openalex.org/I70931966","display_name":"Universit\u00e9 de Montr\u00e9al","ror":"https://ror.org/0161xgx34","country_code":"CA","type":"education","lineage":["https://openalex.org/I70931966"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Morgan Craig","raw_affiliation_strings":["CHU Sainte-Justine Research Centre, 3175 Chemin de la C\u00f4te-Sainte-Catherine, Montr\u00e9al, QC H3T 1C5, Canada","D\u00e9partement de Math\u00e9matiques et de Statistique, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, QC, Canada"],"raw_orcid":"https://orcid.org/0000-0003-4852-4770","affiliations":[{"raw_affiliation_string":"CHU Sainte-Justine Research Centre, 3175 Chemin de la C\u00f4te-Sainte-Catherine, Montr\u00e9al, QC H3T 1C5, Canada","institution_ids":["https://openalex.org/I2802351361"]},{"raw_affiliation_string":"D\u00e9partement de Math\u00e9matiques et de Statistique, Universit\u00e9 de Montr\u00e9al, Montr\u00e9al, QC, Canada","institution_ids":["https://openalex.org/I70931966"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5006094579"],"corresponding_institution_ids":["https://openalex.org/I2802351361","https://openalex.org/I70931966"],"apc_list":{"value":8900,"currency":"USD","value_usd":8900},"apc_paid":{"value":8900,"currency":"USD","value_usd":8900},"fwci":0.9886,"has_fulltext":false,"cited_by_count":10,"citation_normalized_percentile":{"value":0.79641368,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"1","issue":"9","first_page":"100138","last_page":"100138"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T11721","display_name":"Blood properties and coagulation","score":0.9896000027656555,"subfield":{"id":"https://openalex.org/subfields/2740","display_name":"Pulmonary and Respiratory Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T13430","display_name":"Lipid metabolism and disorders","score":0.968999981880188,"subfield":{"id":"https://openalex.org/subfields/2705","display_name":"Cardiology and Cardiovascular Medicine"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T12793","display_name":"Caveolin-1 and cellular processes","score":0.9557999968528748,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/blueprint","display_name":"Blueprint","score":0.8023802042007446},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6092533469200134},{"id":"https://openalex.org/keywords/observational-study","display_name":"Observational study","score":0.5344853401184082},{"id":"https://openalex.org/keywords/intervention","display_name":"Intervention (counseling)","score":0.5132629871368408},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4708858132362366},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.4070702791213989},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37322062253952026},{"id":"https://openalex.org/keywords/cognitive-psychology","display_name":"Cognitive psychology","score":0.36375725269317627},{"id":"https://openalex.org/keywords/psychology","display_name":"Psychology","score":0.35173043608665466},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.3452855050563812},{"id":"https://openalex.org/keywords/cognitive-science","display_name":"Cognitive science","score":0.3293723464012146},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3011699318885803},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2672159671783447},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1489964723587036},{"id":"https://openalex.org/keywords/psychiatry","display_name":"Psychiatry","score":0.11325731873512268},{"id":"https://openalex.org/keywords/engineering","display_name":"Engineering","score":0.10355302691459656},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.09072110056877136},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.08018666505813599}],"concepts":[{"id":"https://openalex.org/C155911762","wikidata":"https://www.wikidata.org/wiki/Q422321","display_name":"Blueprint","level":2,"score":0.8023802042007446},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6092533469200134},{"id":"https://openalex.org/C23131810","wikidata":"https://www.wikidata.org/wiki/Q818574","display_name":"Observational study","level":2,"score":0.5344853401184082},{"id":"https://openalex.org/C2780665704","wikidata":"https://www.wikidata.org/wiki/Q959298","display_name":"Intervention (counseling)","level":2,"score":0.5132629871368408},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4708858132362366},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.4070702791213989},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37322062253952026},{"id":"https://openalex.org/C180747234","wikidata":"https://www.wikidata.org/wiki/Q23373","display_name":"Cognitive psychology","level":1,"score":0.36375725269317627},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.35173043608665466},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.3452855050563812},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.3293723464012146},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3011699318885803},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2672159671783447},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1489964723587036},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.11325731873512268},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.10355302691459656},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.09072110056877136},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.08018666505813599},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.patter.2020.100138","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100138","pdf_url":"http://www.cell.com/article/S2666389920301860/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},{"id":"pmid:33336196","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33336196","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns (New York, N.Y.)","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7733879","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7733879","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Patterns (N Y)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/j.patter.2020.100138","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100138","pdf_url":"http://www.cell.com/article/S2666389920301860/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.699999988079071,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1075146073","display_name":"Quantification and prediction of treatment efficacy for HIV cure strategies","funder_award_id":"7dp5od019851-06","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3096856821.pdf"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W1745837869","https://openalex.org/W1752598806","https://openalex.org/W1974618482","https://openalex.org/W1986316936","https://openalex.org/W2001792568","https://openalex.org/W2008228831","https://openalex.org/W2009136525","https://openalex.org/W2009609863","https://openalex.org/W2010767085","https://openalex.org/W2013946336","https://openalex.org/W2014356541","https://openalex.org/W2014696850","https://openalex.org/W2015770086","https://openalex.org/W2016885220","https://openalex.org/W2017561865","https://openalex.org/W2024383241","https://openalex.org/W2025836487","https://openalex.org/W2030126859","https://openalex.org/W2036682095","https://openalex.org/W2041782669","https://openalex.org/W2059158081","https://openalex.org/W2071526465","https://openalex.org/W2073746158","https://openalex.org/W2075298888","https://openalex.org/W2078577723","https://openalex.org/W2078898317","https://openalex.org/W2083278075","https://openalex.org/W2087370225","https://openalex.org/W2109384743","https://openalex.org/W2112074373","https://openalex.org/W2113263213","https://openalex.org/W2120048588","https://openalex.org/W2126999002","https://openalex.org/W2127234432","https://openalex.org/W2135046866","https://openalex.org/W2148972050","https://openalex.org/W2161922735","https://openalex.org/W2166016327","https://openalex.org/W2482880671","https://openalex.org/W2595589363","https://openalex.org/W2604360046","https://openalex.org/W2610916255","https://openalex.org/W2620275924","https://openalex.org/W2751980430","https://openalex.org/W2760921629","https://openalex.org/W2762511165","https://openalex.org/W2807575667","https://openalex.org/W2908327860","https://openalex.org/W2948132313","https://openalex.org/W2996276198","https://openalex.org/W3038118776","https://openalex.org/W3088067371","https://openalex.org/W3099803807","https://openalex.org/W3122507959","https://openalex.org/W4252192476","https://openalex.org/W6637610247","https://openalex.org/W6652788025","https://openalex.org/W6653864915","https://openalex.org/W6676602245","https://openalex.org/W6684488564","https://openalex.org/W6734931655","https://openalex.org/W6745042102"],"related_works":["https://openalex.org/W2384575798","https://openalex.org/W2265189214","https://openalex.org/W2766654718","https://openalex.org/W2007211730","https://openalex.org/W2379378785","https://openalex.org/W1971312788","https://openalex.org/W345637833","https://openalex.org/W2182844422","https://openalex.org/W2359853023","https://openalex.org/W73348314"],"abstract_inverted_index":{"A":[0],"central":[1],"challenge":[2],"in":[3,56,76,141],"medicine":[4],"is":[5],"translating":[6],"from":[7,60],"observational":[8],"understanding":[9,142],"to":[10,28,35,63,106,125],"mechanistic":[11,54],"understanding,":[12,32],"where":[13],"some":[14],"observations":[15],"are":[16],"recognized":[17],"as":[18],"causes":[19],"for":[20,73,109],"the":[21,110],"others.":[22],"This":[23],"can":[24],"lead":[25],"not":[26],"only":[27],"new":[29,104],"treatments":[30],"and":[31,80,90,101,143],"but":[33],"also":[34,102],"recognition":[36],"of":[37,45,68,112,116],"novel":[38],"phenotypes.":[39],"Here,":[40],"we":[41],"apply":[42],"a":[43,57,93,107],"collection":[44],"mathematical":[46],"techniques":[47],"(":[48],"empirical":[49],"dynamics":[50],"),":[51],"which":[52,77],"infer":[53],"networks":[55],"model-free":[58],"manner":[59],"longitudinal":[61],"data,":[62],"hematopoiesis.":[64],"Our":[65,96],"study":[66],"consists":[67],"three":[69,130],"subjects":[70],"with":[71],"markers":[72,89],"cyclic":[74],"thrombocytopenia,":[75],"multiple":[78],"cells":[79],"proteins":[81],"undergo":[82],"abnormal":[83],"oscillations.":[84],"One":[85],"subject":[86],"has":[87,138],"atypical":[88],"may":[91],"represent":[92],"rare":[94],"phenotype.":[95],"analyses":[97],"support":[98],"this":[99,113,136],"contention,":[100],"lend":[103],"evidence":[105],"theory":[108],"cause":[111],"disorder.":[114],"Simulations":[115],"an":[117],"intervention":[118],"yield":[119],"encouraging":[120],"results,":[121],"even":[122],"when":[123],"applied":[124],"patient":[126],"data":[127],"outside":[128],"our":[129],"subjects.":[131],"These":[132],"successes":[133],"suggest":[134],"that":[135],"blueprint":[137],"broader":[139],"applicability":[140],"treating":[144],"complex":[145],"disorders.":[146]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":3}],"updated_date":"2026-08-06T08:24:18.245995","created_date":"2025-10-10T00:00:00"}
