{"id":"https://openalex.org/W3050907047","doi":"https://doi.org/10.1016/j.patter.2020.100087","title":"Cellular State Transformations Using Deep Learning for Precision Medicine Applications","display_name":"Cellular State Transformations Using Deep Learning for Precision Medicine Applications","publication_year":2020,"publication_date":"2020-08-17","ids":{"openalex":"https://openalex.org/W3050907047","doi":"https://doi.org/10.1016/j.patter.2020.100087","mag":"3050907047","pmid":"https://pubmed.ncbi.nlm.nih.gov/33205131"},"language":"en","primary_location":{"id":"doi:10.1016/j.patter.2020.100087","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100087","pdf_url":"http://www.cell.com/article/S266638992030115X/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"http://www.cell.com/article/S266638992030115X/pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5055631648","display_name":"Colin Targonski","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Colin Targonski","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5112742538","display_name":"M. Reed Bender","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"M. Reed Bender","raw_affiliation_strings":["Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083665803","display_name":"Benjamin T. Shealy","orcid":"https://orcid.org/0000-0002-2230-7404"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benjamin T. Shealy","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070911716","display_name":"Benafsh Husain","orcid":"https://orcid.org/0000-0002-5542-5992"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Benafsh Husain","raw_affiliation_strings":["Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069357327","display_name":"Bill Paseman","orcid":"https://orcid.org/0000-0002-5020-0866"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Bill Paseman","raw_affiliation_strings":["Paseman & Associates, Saratoga, CA 95070, USA"],"affiliations":[{"raw_affiliation_string":"Paseman & Associates, Saratoga, CA 95070, USA","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043923029","display_name":"Melissa C. Smith","orcid":"https://orcid.org/0000-0003-0798-8536"},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Melissa C. Smith","raw_affiliation_strings":["Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Department of Electrical and Computer Engineering, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5021360029","display_name":"F. Alex Feltus","orcid":null},"institutions":[{"id":"https://openalex.org/I8078737","display_name":"Clemson University","ror":"https://ror.org/037s24f05","country_code":"US","type":"education","lineage":["https://openalex.org/I8078737"]},{"id":"https://openalex.org/I4210105714","display_name":"Center for Human Genetics","ror":"https://ror.org/01gcrbc43","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210105714"]},{"id":"https://openalex.org/I4210149064","display_name":"Greenwood Genetic Center","ror":"https://ror.org/03p64mj41","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I4210149064"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"F. Alex Feltus","raw_affiliation_strings":["Center for Human Genetics, Clemson University, Greenwood, SC 29646, USA","Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA","Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA"],"affiliations":[{"raw_affiliation_string":"Center for Human Genetics, Clemson University, Greenwood, SC 29646, USA","institution_ids":["https://openalex.org/I4210149064","https://openalex.org/I8078737","https://openalex.org/I4210105714"]},{"raw_affiliation_string":"Department of Biomedical Data Science and Informatics, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]},{"raw_affiliation_string":"Department of Genetics and Biochemistry, Clemson University, Clemson, SC 29634, USA","institution_ids":["https://openalex.org/I8078737"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5021360029"],"corresponding_institution_ids":["https://openalex.org/I4210105714","https://openalex.org/I4210149064","https://openalex.org/I8078737"],"apc_list":{"value":5200,"currency":"USD","value_usd":5200},"apc_paid":{"value":5200,"currency":"USD","value_usd":5200},"fwci":0.7508,"has_fulltext":false,"cited_by_count":12,"citation_normalized_percentile":{"value":0.69670362,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"1","issue":"6","first_page":"100087","last_page":"100087"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9904999732971191,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.7355258464813232},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5263080596923828},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.44717854261398315},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4200293719768524},{"id":"https://openalex.org/keywords/precision-medicine","display_name":"Precision medicine","score":0.41821929812431335},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.415483295917511},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4004775583744049},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37775719165802},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.21238625049591064}],"concepts":[{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.7355258464813232},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5263080596923828},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.44717854261398315},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4200293719768524},{"id":"https://openalex.org/C163763905","wikidata":"https://www.wikidata.org/wiki/Q17075943","display_name":"Precision medicine","level":2,"score":0.41821929812431335},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.415483295917511},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4004775583744049},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37775719165802},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.21238625049591064}],"mesh":[],"locations_count":4,"locations":[{"id":"doi:10.1016/j.patter.2020.100087","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100087","pdf_url":"http://www.cell.com/article/S266638992030115X/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},{"id":"pmid:33205131","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/33205131","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns (New York, N.Y.)","raw_type":null},{"id":"pmh:oai:doaj.org/article:979d5208fe264f49aa45b80f42da7e2d","is_oa":true,"landing_page_url":"https://doaj.org/article/979d5208fe264f49aa45b80f42da7e2d","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Patterns, Vol 1, Iss 6, Pp 100087- (2020)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:7660411","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7660411","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Patterns (N Y)","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/j.patter.2020.100087","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.patter.2020.100087","pdf_url":"http://www.cell.com/article/S266638992030115X/pdf","source":{"id":"https://openalex.org/S4210198061","display_name":"Patterns","issn_l":"2666-3899","issn":["2666-3899"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Patterns","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.7699999809265137}],"awards":[],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3050907047.pdf","grobid_xml":"https://content.openalex.org/works/W3050907047.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W1259664346","https://openalex.org/W1522301498","https://openalex.org/W1544827683","https://openalex.org/W1673923490","https://openalex.org/W1821729734","https://openalex.org/W1945616565","https://openalex.org/W1959608418","https://openalex.org/W1990852843","https://openalex.org/W1999574084","https://openalex.org/W2016060560","https://openalex.org/W2025183726","https://openalex.org/W2025945038","https://openalex.org/W2029532166","https://openalex.org/W2042210471","https://openalex.org/W2058951658","https://openalex.org/W2095988352","https://openalex.org/W2098215003","https://openalex.org/W2099471712","https://openalex.org/W2099501356","https://openalex.org/W2101234009","https://openalex.org/W2111867681","https://openalex.org/W2123012847","https://openalex.org/W2124649657","https://openalex.org/W2125967300","https://openalex.org/W2128443448","https://openalex.org/W2130410032","https://openalex.org/W2136170412","https://openalex.org/W2158485828","https://openalex.org/W2160815625","https://openalex.org/W2163605009","https://openalex.org/W2177784250","https://openalex.org/W2179438025","https://openalex.org/W2184045248","https://openalex.org/W2187089797","https://openalex.org/W2194775991","https://openalex.org/W2236822143","https://openalex.org/W2253037709","https://openalex.org/W2264017649","https://openalex.org/W2327951273","https://openalex.org/W2342127666","https://openalex.org/W2570685808","https://openalex.org/W2593414223","https://openalex.org/W2605287558","https://openalex.org/W2741564801","https://openalex.org/W2766527293","https://openalex.org/W2767281692","https://openalex.org/W2783555701","https://openalex.org/W2794749944","https://openalex.org/W2800326803","https://openalex.org/W2801400022","https://openalex.org/W2807495430","https://openalex.org/W2808834459","https://openalex.org/W2893749619","https://openalex.org/W2919115771","https://openalex.org/W2949615363","https://openalex.org/W2950864148","https://openalex.org/W2951004968","https://openalex.org/W2952716587","https://openalex.org/W2963073614","https://openalex.org/W2963448658","https://openalex.org/W2963857521","https://openalex.org/W2985014963","https://openalex.org/W3037567775","https://openalex.org/W3100015175","https://openalex.org/W4236965008","https://openalex.org/W4294643831","https://openalex.org/W4300072878","https://openalex.org/W4300407353","https://openalex.org/W4301409532","https://openalex.org/W4320013936","https://openalex.org/W6631190155","https://openalex.org/W6632455782","https://openalex.org/W6637162671","https://openalex.org/W6640425456","https://openalex.org/W6640963894","https://openalex.org/W6675354045","https://openalex.org/W6684191040","https://openalex.org/W6689944646","https://openalex.org/W6726114608","https://openalex.org/W6729966448","https://openalex.org/W6731927902","https://openalex.org/W6734564793","https://openalex.org/W6736210646","https://openalex.org/W6745560452","https://openalex.org/W6748052837","https://openalex.org/W6755312952","https://openalex.org/W6779669310"],"related_works":["https://openalex.org/W2399513595","https://openalex.org/W4388386498","https://openalex.org/W2028462563","https://openalex.org/W2942994004","https://openalex.org/W1976510917","https://openalex.org/W3155641129","https://openalex.org/W3032874291","https://openalex.org/W2005057264","https://openalex.org/W2363156284","https://openalex.org/W2415025170"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3}],"updated_date":"2026-01-13T01:12:25.745995","created_date":"2025-10-10T00:00:00"}
