{"id":"https://openalex.org/W1970796514","doi":"https://doi.org/10.1016/j.patrec.2010.04.010","title":"An algorithm to find distant repeats in a pair of protein sequences","display_name":"An algorithm to find distant repeats in a pair of protein sequences","publication_year":2010,"publication_date":"2010-04-19","ids":{"openalex":"https://openalex.org/W1970796514","doi":"https://doi.org/10.1016/j.patrec.2010.04.010","mag":"1970796514"},"language":"en","primary_location":{"id":"doi:10.1016/j.patrec.2010.04.010","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.patrec.2010.04.010","pdf_url":null,"source":{"id":"https://openalex.org/S151820558","display_name":"Pattern Recognition Letters","issn_l":"0167-8655","issn":["0167-8655","1872-7344"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pattern Recognition Letters","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5024231765","display_name":"Radhakrishnan Sabarinathan","orcid":"https://orcid.org/0000-0001-8916-3954"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"R. Sabarinathan","raw_affiliation_strings":["Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062103632","display_name":"Nirjhar Banerjee","orcid":"https://orcid.org/0000-0003-3404-9390"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Nirjhar Banerjee","raw_affiliation_strings":["Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5039956503","display_name":"N. Balakrishnan","orcid":"https://orcid.org/0000-0001-5842-8892"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"N. Balakrishnan","raw_affiliation_strings":["Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India","Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, 560 012, India"],"affiliations":[{"raw_affiliation_string":"Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore 560 012, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Supercomputer Education and Research Centre, Indian Institute of Science, Bangalore, 560 012, India","institution_ids":["https://openalex.org/I59270414"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5035649762","display_name":"K. Sekar","orcid":"https://orcid.org/0000-0002-9755-862X"},"institutions":[{"id":"https://openalex.org/I59270414","display_name":"Indian Institute of Science Bangalore","ror":"https://ror.org/04dese585","country_code":"IN","type":"education","lineage":["https://openalex.org/I59270414"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"K. Sekar","raw_affiliation_strings":["Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre (Centre of excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012, India","institution_ids":["https://openalex.org/I59270414"]},{"raw_affiliation_string":"Bioinformatics Centre (Centre of Excellence in Structural Biology and Bio-computing), Indian Institute of Science, Bangalore 560 012 (India)","institution_ids":["https://openalex.org/I59270414"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5035649762"],"corresponding_institution_ids":["https://openalex.org/I59270414"],"apc_list":{"value":2500,"currency":"USD","value_usd":2500},"apc_paid":null,"fwci":0.1179,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.42377984,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"31","issue":"14","first_page":"2161","last_page":"2169"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10949","display_name":"Genetic Neurodegenerative Diseases","score":0.9988999962806702,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10497","display_name":"Fungal and yeast genetics research","score":0.9891999959945679,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5956854820251465},{"id":"https://openalex.org/keywords/direct-repeat","display_name":"Direct repeat","score":0.5423023104667664},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5106001496315002},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4972074329853058},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.42829763889312744},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.418012797832489},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4117140769958496},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.38938915729522705},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.19265857338905334},{"id":"https://openalex.org/keywords/base-sequence","display_name":"Base sequence","score":0.1749032437801361},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1058512032032013}],"concepts":[{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5956854820251465},{"id":"https://openalex.org/C29511175","wikidata":"https://www.wikidata.org/wiki/Q5280381","display_name":"Direct repeat","level":4,"score":0.5423023104667664},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5106001496315002},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4972074329853058},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.42829763889312744},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.418012797832489},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4117140769958496},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.38938915729522705},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.19265857338905334},{"id":"https://openalex.org/C3017666073","wikidata":"https://www.wikidata.org/wiki/Q1764062","display_name":"Base sequence","level":3,"score":0.1749032437801361},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1058512032032013},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.patrec.2010.04.010","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.patrec.2010.04.010","pdf_url":null,"source":{"id":"https://openalex.org/S151820558","display_name":"Pattern Recognition Letters","issn_l":"0167-8655","issn":["0167-8655","1872-7344"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Pattern Recognition Letters","raw_type":"journal-article"},{"id":"pmh:oai:eprints.iisc.ac.in:33269","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4377196309","display_name":"NOT FOUND REPOSITORY (Indian Institute of Science Bangalore)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I59270414","host_organization_name":"Indian Institute of Science Bangalore","host_organization_lineage":["https://openalex.org/I59270414"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":21,"referenced_works":["https://openalex.org/W1677821","https://openalex.org/W164956572","https://openalex.org/W1778096379","https://openalex.org/W1892858239","https://openalex.org/W1938523069","https://openalex.org/W1996423252","https://openalex.org/W2000543953","https://openalex.org/W2020933513","https://openalex.org/W2028503280","https://openalex.org/W2032843390","https://openalex.org/W2053780937","https://openalex.org/W2065089322","https://openalex.org/W2092670169","https://openalex.org/W2105144801","https://openalex.org/W2113023106","https://openalex.org/W2139565054","https://openalex.org/W2144281053","https://openalex.org/W2146489851","https://openalex.org/W2159174448","https://openalex.org/W4285719527","https://openalex.org/W6683499438"],"related_works":["https://openalex.org/W2140046919","https://openalex.org/W1561589650","https://openalex.org/W2613905259","https://openalex.org/W2057907336","https://openalex.org/W2126722593","https://openalex.org/W2065530813","https://openalex.org/W1509071637","https://openalex.org/W2957509185","https://openalex.org/W2146849562","https://openalex.org/W2028961943"],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-05T17:49:38.594831","created_date":"2025-10-10T00:00:00"}
