{"id":"https://openalex.org/W3213672119","doi":"https://doi.org/10.1016/j.parco.2021.102861","title":"Benchmarking the performance of irregular computations in AutoDock-GPU molecular docking","display_name":"Benchmarking the performance of irregular computations in AutoDock-GPU molecular docking","publication_year":2021,"publication_date":"2021-11-10","ids":{"openalex":"https://openalex.org/W3213672119","doi":"https://doi.org/10.1016/j.parco.2021.102861","mag":"3213672119","pmid":"https://pubmed.ncbi.nlm.nih.gov/34898769"},"language":"en","primary_location":{"id":"doi:10.1016/j.parco.2021.102861","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.parco.2021.102861","pdf_url":null,"source":{"id":"https://openalex.org/S112708030","display_name":"Parallel Computing","issn_l":"0167-8191","issn":["0167-8191","1872-7336"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Parallel Computing","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8654209","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5037721262","display_name":"Leonardo Solis-Vasquez","orcid":"https://orcid.org/0000-0001-6896-9879"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technische Universit\u00e4t Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Leonardo Solis-Vasquez","raw_affiliation_strings":["Embedded Systems and Applications Group. Technical University of Darmstadt, Darmstadt, Germany","Hochschulstr. 10, D-64289, Darmstadt, Germany","Embedded Systems and Applications Group, Technical University of Darmstadt, Darmstadt, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6896-9879","affiliations":[{"raw_affiliation_string":"Embedded Systems and Applications Group. Technical University of Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Hochschulstr. 10, D-64289, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Embedded Systems and Applications Group, Technical University of Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043900157","display_name":"Andreas F. Tillack","orcid":"https://orcid.org/0000-0002-1832-3030"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Andreas F. Tillack","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5072196443","display_name":"Diogo Santos\u2010Martins","orcid":"https://orcid.org/0000-0003-4622-3747"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Diogo Santos-Martins","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047000315","display_name":"Andreas Koch","orcid":"https://orcid.org/0000-0002-1164-3082"},"institutions":[{"id":"https://openalex.org/I31512782","display_name":"Technische Universit\u00e4t Darmstadt","ror":"https://ror.org/05n911h24","country_code":"DE","type":"education","lineage":["https://openalex.org/I31512782"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Koch","raw_affiliation_strings":["Embedded Systems and Applications Group. Technical University of Darmstadt, Darmstadt, Germany","Embedded Systems and Applications Group, Technical University of Darmstadt, Darmstadt, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Embedded Systems and Applications Group. Technical University of Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]},{"raw_affiliation_string":"Embedded Systems and Applications Group, Technical University of Darmstadt, Darmstadt, Germany","institution_ids":["https://openalex.org/I31512782"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063252571","display_name":"Scott LeGrand","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127875","display_name":"Nvidia (United States)","ror":"https://ror.org/03jdj4y14","country_code":"US","type":"company","lineage":["https://openalex.org/I4210127875"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Scott LeGrand","raw_affiliation_strings":["NVIDIA Corporation. Santa Clara, CA, United States","NVIDIA Corporation, Santa Clara, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"NVIDIA Corporation. Santa Clara, CA, United States","institution_ids":["https://openalex.org/I4210127875"]},{"raw_affiliation_string":"NVIDIA Corporation, Santa Clara, CA, United States","institution_ids":["https://openalex.org/I4210127875"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068867875","display_name":"Stefano Forli","orcid":"https://orcid.org/0000-0002-5964-7111"},"institutions":[{"id":"https://openalex.org/I123431417","display_name":"Scripps Research Institute","ror":"https://ror.org/02dxx6824","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I123431417"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stefano Forli","raw_affiliation_strings":["Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology. The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]},{"raw_affiliation_string":"Department of Integrative Structural and Computational Biology, The Scripps Research Institute, La Jolla, CA, United States","institution_ids":["https://openalex.org/I123431417"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5037721262"],"corresponding_institution_ids":["https://openalex.org/I31512782"],"apc_list":{"value":2680,"currency":"USD","value_usd":2680},"apc_paid":null,"fwci":3.9566,"has_fulltext":false,"cited_by_count":40,"citation_normalized_percentile":{"value":0.94327481,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"109","issue":null,"first_page":"102861","last_page":"102861"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9958999752998352,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11948","display_name":"Machine Learning in Materials Science","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/autodock","display_name":"AutoDock","score":0.9172027111053467},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8465477228164673},{"id":"https://openalex.org/keywords/parallel-computing","display_name":"Parallel computing","score":0.5516765713691711},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5278744101524353},{"id":"https://openalex.org/keywords/computation","display_name":"Computation","score":0.4975283443927765},{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.48755568265914917},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.480743408203125},{"id":"https://openalex.org/keywords/general-purpose-computing-on-graphics-processing-units","display_name":"General-purpose computing on graphics processing units","score":0.4631381034851074},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.1511787474155426},{"id":"https://openalex.org/keywords/graphics","display_name":"Graphics","score":0.12429994344711304},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.119113028049469},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.1105201244354248}],"concepts":[{"id":"https://openalex.org/C2780152424","wikidata":"https://www.wikidata.org/wiki/Q4826062","display_name":"AutoDock","level":4,"score":0.9172027111053467},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8465477228164673},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.5516765713691711},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5278744101524353},{"id":"https://openalex.org/C45374587","wikidata":"https://www.wikidata.org/wiki/Q12525525","display_name":"Computation","level":2,"score":0.4975283443927765},{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.48755568265914917},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.480743408203125},{"id":"https://openalex.org/C50630238","wikidata":"https://www.wikidata.org/wiki/Q971505","display_name":"General-purpose computing on graphics processing units","level":3,"score":0.4631381034851074},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.1511787474155426},{"id":"https://openalex.org/C21442007","wikidata":"https://www.wikidata.org/wiki/Q1027879","display_name":"Graphics","level":2,"score":0.12429994344711304},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.119113028049469},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.1105201244354248},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.parco.2021.102861","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.parco.2021.102861","pdf_url":null,"source":{"id":"https://openalex.org/S112708030","display_name":"Parallel Computing","issn_l":"0167-8191","issn":["0167-8191","1872-7336"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Parallel Computing","raw_type":"journal-article"},{"id":"pmid:34898769","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34898769","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Parallel computing","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:8654209","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8654209","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Parallel Comput","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:8654209","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/8654209","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Parallel Comput","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G5883408103","display_name":null,"funder_award_id":"GM069832","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":68,"referenced_works":["https://openalex.org/W6908809","https://openalex.org/W77482329","https://openalex.org/W342672755","https://openalex.org/W964176700","https://openalex.org/W1542046485","https://openalex.org/W1668344991","https://openalex.org/W1805979977","https://openalex.org/W1917913112","https://openalex.org/W1983194490","https://openalex.org/W1997808394","https://openalex.org/W2005925339","https://openalex.org/W2013085020","https://openalex.org/W2015313364","https://openalex.org/W2051838840","https://openalex.org/W2091734240","https://openalex.org/W2096553377","https://openalex.org/W2098800684","https://openalex.org/W2105668062","https://openalex.org/W2114239896","https://openalex.org/W2118341874","https://openalex.org/W2123859926","https://openalex.org/W2126139903","https://openalex.org/W2130479394","https://openalex.org/W2132617221","https://openalex.org/W2134967712","https://openalex.org/W2150056503","https://openalex.org/W2160992134","https://openalex.org/W2165526004","https://openalex.org/W2171778773","https://openalex.org/W2183050958","https://openalex.org/W2343614482","https://openalex.org/W2578119541","https://openalex.org/W2613685575","https://openalex.org/W2732801577","https://openalex.org/W2752386062","https://openalex.org/W2806399642","https://openalex.org/W2886300330","https://openalex.org/W2888204870","https://openalex.org/W2932404384","https://openalex.org/W2983577496","https://openalex.org/W2988682892","https://openalex.org/W2995652570","https://openalex.org/W3010066494","https://openalex.org/W3103608420","https://openalex.org/W3106351511","https://openalex.org/W3120361527","https://openalex.org/W3123540889","https://openalex.org/W3155545561","https://openalex.org/W3159160110","https://openalex.org/W4214652837","https://openalex.org/W4234065093","https://openalex.org/W4235446207","https://openalex.org/W6603143614","https://openalex.org/W6625248363","https://openalex.org/W6632373713","https://openalex.org/W6639979234","https://openalex.org/W6651737259","https://openalex.org/W6653956324","https://openalex.org/W6675064622","https://openalex.org/W6679804453","https://openalex.org/W6682187800","https://openalex.org/W6737881696","https://openalex.org/W6743614568","https://openalex.org/W6753450260","https://openalex.org/W6774562717","https://openalex.org/W6780556845","https://openalex.org/W6789173281","https://openalex.org/W6794280679"],"related_works":["https://openalex.org/W2058674645","https://openalex.org/W1594539819","https://openalex.org/W2766845742","https://openalex.org/W2007257620","https://openalex.org/W4213038553","https://openalex.org/W2130867670","https://openalex.org/W1984029386","https://openalex.org/W4312202637","https://openalex.org/W2136513242","https://openalex.org/W2336040088"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":11},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":11},{"year":2022,"cited_by_count":9}],"updated_date":"2026-05-27T09:02:27.158192","created_date":"2025-10-10T00:00:00"}
