{"id":"https://openalex.org/W7153933975","doi":"https://doi.org/10.1016/j.neuroimage.2026.121877","title":"Foundation models for brain imaging: A systematic review","display_name":"Foundation models for brain imaging: A systematic review","publication_year":2026,"publication_date":"2026-04-12","ids":{"openalex":"https://openalex.org/W7153933975","doi":"https://doi.org/10.1016/j.neuroimage.2026.121877","pmid":"https://pubmed.ncbi.nlm.nih.gov/41974291"},"language":"en","primary_location":{"id":"doi:10.1016/j.neuroimage.2026.121877","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2026.121877","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.neuroimage.2026.121877","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5034416417","display_name":"Salah Ghamizi","orcid":"https://orcid.org/0000-0002-0738-8250"},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":true,"raw_author_name":"Salah Ghamizi","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; SnT, University of Luxembourg, Esch-sur-Alzette, 4365, Luxembourg. Electronic address: Salah.Ghamizi@lih.lu"],"raw_orcid":"https://orcid.org/0000-0002-0738-8250","affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; SnT, University of Luxembourg, Esch-sur-Alzette, 4365, Luxembourg. Electronic address: Salah.Ghamizi@lih.lu","institution_ids":["https://openalex.org/I4210101141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074037878","display_name":"Georgia Kanli","orcid":"https://orcid.org/0000-0001-8713-9838"},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Georgia Kanli","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, 61600, Czech Republic"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, 61600, Czech Republic","institution_ids":["https://openalex.org/I4210101141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133449894","display_name":"Yu Deng","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Yu Deng","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; King's College London, London, WC2R 2LS, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg; King's College London, London, WC2R 2LS, UK","institution_ids":["https://openalex.org/I4210101141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110346409","display_name":"Val\u00e9rie Palissot","orcid":null},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Val\u00e9rie Palissot","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg","institution_ids":["https://openalex.org/I4210101141"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037854290","display_name":"Magali Perquin","orcid":"https://orcid.org/0000-0002-0386-0212"},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Magali Perquin","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg","institution_ids":["https://openalex.org/I4210101141"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5026216199","display_name":"Olivier Keunen","orcid":"https://orcid.org/0000-0003-2203-7026"},"institutions":[{"id":"https://openalex.org/I4210101141","display_name":"Luxembourg Institute of Health","ror":"https://ror.org/012m8gv78","country_code":"LU","type":"nonprofit","lineage":["https://openalex.org/I4210101141"]}],"countries":["LU"],"is_corresponding":false,"raw_author_name":"Olivier Keunen","raw_affiliation_strings":["Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Luxembourg Institute of Health (LIH), Luxembourg, 1445, Luxembourg","institution_ids":["https://openalex.org/I4210101141"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5034416417"],"corresponding_institution_ids":["https://openalex.org/I4210101141"],"apc_list":{"value":3450,"currency":"USD","value_usd":3450},"apc_paid":{"value":3450,"currency":"USD","value_usd":3450},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.62885866,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"333","issue":null,"first_page":"121877","last_page":"121877"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11406","display_name":"Cerebrospinal fluid and hydrocephalus","score":0.06889999657869339,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11406","display_name":"Cerebrospinal fluid and hydrocephalus","score":0.06889999657869339,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10129","display_name":"Glioma Diagnosis and Treatment","score":0.059300001710653305,"subfield":{"id":"https://openalex.org/subfields/2716","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10241","display_name":"Functional Brain Connectivity Studies","score":0.05909999832510948,"subfield":{"id":"https://openalex.org/subfields/2805","display_name":"Cognitive Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/foundation","display_name":"Foundation (evidence)","score":0.817300021648407},{"id":"https://openalex.org/keywords/systematic-review","display_name":"Systematic review","score":0.2231999933719635}],"concepts":[{"id":"https://openalex.org/C2780966255","wikidata":"https://www.wikidata.org/wiki/Q5474306","display_name":"Foundation (evidence)","level":2,"score":0.817300021648407},{"id":"https://openalex.org/C55587333","wikidata":"https://www.wikidata.org/wiki/Q1133029","display_name":"Engineering ethics","level":1,"score":0.5425999760627747},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.3849000036716461},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.35510000586509705},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.3522999882698059},{"id":"https://openalex.org/C188147891","wikidata":"https://www.wikidata.org/wiki/Q147638","display_name":"Cognitive science","level":1,"score":0.32739999890327454},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3174999952316284},{"id":"https://openalex.org/C15744967","wikidata":"https://www.wikidata.org/wiki/Q9418","display_name":"Psychology","level":0,"score":0.2766000032424927},{"id":"https://openalex.org/C189708586","wikidata":"https://www.wikidata.org/wiki/Q1504425","display_name":"Systematic review","level":3,"score":0.2231999933719635},{"id":"https://openalex.org/C201995342","wikidata":"https://www.wikidata.org/wiki/Q682496","display_name":"Systems engineering","level":1,"score":0.20309999585151672}],"mesh":[{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000000981","qualifier_name":"diagnostic imaging","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008279","descriptor_name":"Magnetic Resonance Imaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049268","descriptor_name":"Positron-Emission Tomography","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059906","descriptor_name":"Neuroimaging","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1016/j.neuroimage.2026.121877","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2026.121877","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},{"id":"pmid:41974291","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41974291","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":null},{"id":"pmh:oai:dspace.vut.cz:11012/256525","is_oa":true,"landing_page_url":"https://hdl.handle.net/11012/256525","pdf_url":null,"source":{"id":"https://openalex.org/S4306400317","display_name":"Brno University of Technology Digital Library (Brno University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60587646","host_organization_name":"Brno University of Technology","host_organization_lineage":["https://openalex.org/I60587646"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:doaj.org/article:01b2ec08f3b7435690665585d9b2ba36","is_oa":true,"landing_page_url":"https://doaj.org/article/01b2ec08f3b7435690665585d9b2ba36","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"NeuroImage, Vol 333, Iss , Pp 121877- (2026)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.neuroimage.2026.121877","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2026.121877","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2208265905","display_name":null,"funder_award_id":"LM2023050","funder_id":"https://openalex.org/F4320321005","funder_display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy"},{"id":"https://openalex.org/G3583285825","display_name":null,"funder_award_id":"C24/IS/18942843","funder_id":"https://openalex.org/F4320321038","funder_display_name":"Fonds National de la Recherche Luxembourg"}],"funders":[{"id":"https://openalex.org/F4320321005","display_name":"Ministerstvo \u0160kolstv\u00ed, Ml\u00e1de\u017ee a T\u011blov\u00fdchovy","ror":"https://ror.org/037n8p820"},{"id":"https://openalex.org/F4320321038","display_name":"Fonds National de la Recherche Luxembourg","ror":"https://ror.org/039z13y21"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W2101332957","https://openalex.org/W2150884987","https://openalex.org/W2194775991","https://openalex.org/W2907554860","https://openalex.org/W4295106663","https://openalex.org/W4321437302","https://openalex.org/W4365143687","https://openalex.org/W4377043947","https://openalex.org/W4384561707","https://openalex.org/W4385456320","https://openalex.org/W4386973901","https://openalex.org/W4387580644","https://openalex.org/W4390874575","https://openalex.org/W4391109864","https://openalex.org/W4392203599","https://openalex.org/W4392373674","https://openalex.org/W4405480383","https://openalex.org/W4408806526"],"related_works":[],"abstract_inverted_index":{"Foundation":[0],"models":[1,126,183,222,289,313],"(FMs),":[2],"large":[3],"neural":[4],"networks":[5],"pretrained":[6],"on":[7,141,292],"extensive":[8],"and":[9,16,53,69,83,98,113,144,169,182,195,223,237,255,259,264,275,283,306,337,344,347,352],"diverse":[10],"datasets,":[11],"have":[12,34],"revolutionized":[13],"artificial":[14],"intelligence":[15],"demonstrated":[17],"significant":[18],"promise":[19],"in":[20,40,50,129,177,233,334,350],"medical":[21,204],"imaging":[22,43,64,96,138,150,205,336],"by":[23,155,167,186,326],"enabling":[24],"robust":[25],"performance":[26],"with":[27,173],"limited":[28],"labeled":[29],"data.":[30],"Although":[31],"numerous":[32],"surveys":[33],"reviewed":[35],"the":[36,51,80,122,210,214,216,220,234,243,261,311],"application":[37],"of":[38,55,86,158,171,179,209,213,253,310],"FMs":[39,87,100,135,333,343],"healthcare,":[41],"brain":[42,89,95,137,249,335],"remains":[44,151],"underrepresented,":[45],"despite":[46],"its":[47],"critical":[48,231],"role":[49],"diagnosis":[52],"treatment":[54],"neurological":[56],"diseases":[57,257],"using":[58],"modalities":[59],"such":[60],"as":[61],"magnetic":[62],"resonance":[63],"(MRI),":[65],"computed":[66],"tomography":[67,72],"(CT),":[68],"positron":[70],"emission":[71],"(PET).":[73],"To":[74],"address":[75],"this":[76],"gap,":[77],"we":[78],"present":[79],"first":[81],"comprehensive":[82],"curated":[84],"review":[85,119,218,324],"for":[88,124,136],"imaging.":[90],"We":[91,240],"systematically":[92],"analyze":[93],"161":[94],"datasets":[97],"143":[99,312],"up":[101],"to":[102,318,331,340,345],"Jan,":[103],"2026,":[104],"providing":[105],"insights":[106],"into":[107],"key":[108],"design":[109],"choices,":[110],"training":[111],"paradigms,":[112],"optimizations":[114],"driving":[115],"recent":[116],"advances.":[117],"Our":[118,160,227,322],"highlights":[120],"that":[121,242],"race":[123],"larger":[125],"has":[127],"stabilized":[128],"2026":[130],"towards":[131],"more":[132],"efficient":[133],"models.":[134],"heavily":[139,269],"rely":[140,290],"MRI":[142],"(92%)":[143],"CT":[145],"(57%)":[146],"inputs,":[147],"while":[148],"PET":[149],"vastly":[152],"underexplored":[153],"(supported":[154],"only":[156,307],"15%":[157],"models).":[159],"study":[161,215,228],"also":[162,229],"demonstrates":[163],"architectural":[164],"vulnerabilities":[165],"caused":[166],"homogenization":[168],"lack":[170],"diversity,":[172],"Vision":[174],"Transformers":[175],"utilized":[176],"48%":[178],"visual":[180],"encoders,":[181],"predominantly":[184],"built":[185],"patching":[187],"pre-existing":[188],"natural":[189],"image":[190,284],"backbones":[191],"like":[192,280],"SAM":[193],"(19%),":[194],"CLIP":[196],"(12%)":[197],"rather":[198,301],"than":[199,302],"utilizing":[200],"native":[201],"domain-specific":[202],"3D":[203],"innovations.":[206,226],"For":[207],"each":[208],"eight":[211],"tasks":[212,267],"systematic":[217,323],"identifies":[219],"best":[221],"discusses":[224],"their":[225],"uncovers":[230],"gaps":[232],"tasks,":[235],"pathologies":[236],"clinical":[238,351],"validation.":[239],"demonstrate":[241],"literature":[244],"is":[245],"disproportionately":[246],"skewed":[247],"toward":[248,271],"cancer":[250],"research":[251,329,353],"(37%":[252],"models)":[254],"neurodegenerative":[256],"(24%),":[258],"discuss":[260],"potential":[262],"causes":[263],"remedies.":[265],"Similarly,":[266],"are":[268],"weighted":[270],"anomaly":[272],"classification":[273],"(44%)":[274],"segmentation":[276],"(32%),":[277],"leaving":[278],"areas":[279],"mental":[281],"health":[282],"synthesis":[285],"underrepresented.":[286],"Besides,":[287],"most":[288],"exclusively":[291],"traditional":[293],"machine":[294],"learning":[295],"metrics":[296],"(e.g.,":[297],"DICE":[298],"or":[299],"SSIM)":[300],"medically":[303],"relevant":[304],"measures,":[305],"seven":[308],"out":[309],"incorporated":[314],"human":[315],"expert":[316],"evaluations":[317],"verify":[319],"real-world":[320],"utility.":[321],"concludes":[325],"outlining":[327],"future":[328],"directions":[330],"advance":[332],"actionable":[338],"recommendations":[339],"build":[341],"better":[342],"evaluate":[346],"deploy":[348],"them":[349],"settings.":[354]},"counts_by_year":[],"updated_date":"2026-05-22T09:01:20.584952","created_date":"2026-04-13T00:00:00"}
