{"id":"https://openalex.org/W4286517409","doi":"https://doi.org/10.1016/j.neuroimage.2022.119494","title":"A quantitative cholinergic and catecholaminergic 3D Atlas of the developing mouse brain","display_name":"A quantitative cholinergic and catecholaminergic 3D Atlas of the developing mouse brain","publication_year":2022,"publication_date":"2022-07-21","ids":{"openalex":"https://openalex.org/W4286517409","doi":"https://doi.org/10.1016/j.neuroimage.2022.119494","pmid":"https://pubmed.ncbi.nlm.nih.gov/35870696"},"language":"en","primary_location":{"id":"doi:10.1016/j.neuroimage.2022.119494","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2022.119494","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.neuroimage.2022.119494","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5026852502","display_name":"Baptiste Riffault","orcid":"https://orcid.org/0000-0003-3551-7096"},"institutions":[{"id":"https://openalex.org/I4210162836","display_name":"Neurochlore (France)","ror":"https://ror.org/05dngkv23","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210162836"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"B. Riffault","raw_affiliation_strings":["Neurochlore, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110405572","display_name":"R. Cloarec","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162836","display_name":"Neurochlore (France)","ror":"https://ror.org/05dngkv23","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210162836"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"R. Cloarec","raw_affiliation_strings":["Neurochlore, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029131345","display_name":"Hamed Rabiei","orcid":"https://orcid.org/0000-0001-6282-8020"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"H. Rabiei","raw_affiliation_strings":["B & A Biomedical, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"B & A Biomedical, Campus scientifique de Luminy, Marseille, France","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049754659","display_name":"M. Begnis","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162836","display_name":"Neurochlore (France)","ror":"https://ror.org/05dngkv23","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210162836"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"M. Begnis","raw_affiliation_strings":["Neurochlore, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065238098","display_name":"D.C. Ferrari","orcid":null},"institutions":[{"id":"https://openalex.org/I4210162836","display_name":"Neurochlore (France)","ror":"https://ror.org/05dngkv23","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210162836"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"D.C. Ferrari","raw_affiliation_strings":["Neurochlore, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5082071725","display_name":"Yehezkel Ben\u2010Ari","orcid":"https://orcid.org/0000-0001-6208-8480"},"institutions":[{"id":"https://openalex.org/I4210162836","display_name":"Neurochlore (France)","ror":"https://ror.org/05dngkv23","country_code":"FR","type":"company","lineage":["https://openalex.org/I4210162836"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Yehezkel Ben-Ari","raw_affiliation_strings":["Neurochlore, Campus scientifique de Luminy, Marseille, France; B & A Biomedical, Campus scientifique de Luminy, Marseille, France","B & A Biomedical, Campus scientifique de Luminy, Marseille, France","Neurochlore, Campus scientifique de Luminy, Marseille, France"],"raw_orcid":"https://orcid.org/0000-0001-6208-8480","affiliations":[{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France; B & A Biomedical, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]},{"raw_affiliation_string":"B & A Biomedical, Campus scientifique de Luminy, Marseille, France","institution_ids":[]},{"raw_affiliation_string":"Neurochlore, Campus scientifique de Luminy, Marseille, France","institution_ids":["https://openalex.org/I4210162836"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5082071725"],"corresponding_institution_ids":["https://openalex.org/I4210162836"],"apc_list":{"value":3450,"currency":"USD","value_usd":3450},"apc_paid":{"value":3450,"currency":"USD","value_usd":3450},"fwci":0.5066,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.61604159,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":96},"biblio":{"volume":"260","issue":null,"first_page":"119494","last_page":"119494"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12963","display_name":"Anesthesia and Neurotoxicity Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2806","display_name":"Developmental Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12963","display_name":"Anesthesia and Neurotoxicity Research","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2806","display_name":"Developmental Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10608","display_name":"Neurogenesis and neuroplasticity mechanisms","score":0.9887999892234802,"subfield":{"id":"https://openalex.org/subfields/2806","display_name":"Developmental Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12061","display_name":"Axon Guidance and Neuronal Signaling","score":0.9857000112533569,"subfield":{"id":"https://openalex.org/subfields/2804","display_name":"Cellular and Molecular Neuroscience"},"field":{"id":"https://openalex.org/fields/28","display_name":"Neuroscience"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/choline-acetyltransferase","display_name":"Choline acetyltransferase","score":0.8219151496887207},{"id":"https://openalex.org/keywords/catecholaminergic","display_name":"Catecholaminergic","score":0.7264026403427124},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.7181695699691772},{"id":"https://openalex.org/keywords/brain-atlas","display_name":"Brain atlas","score":0.5854615569114685},{"id":"https://openalex.org/keywords/cholinergic","display_name":"Cholinergic","score":0.5580576658248901},{"id":"https://openalex.org/keywords/tyrosine-hydroxylase","display_name":"Tyrosine hydroxylase","score":0.554172158241272},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5248622894287109},{"id":"https://openalex.org/keywords/catecholaminergic-cell-groups","display_name":"Catecholaminergic cell groups","score":0.47307881712913513},{"id":"https://openalex.org/keywords/dopamine","display_name":"Dopamine","score":0.2645019590854645}],"concepts":[{"id":"https://openalex.org/C198399640","wikidata":"https://www.wikidata.org/wiki/Q14863671","display_name":"Choline acetyltransferase","level":3,"score":0.8219151496887207},{"id":"https://openalex.org/C2776824294","wikidata":"https://www.wikidata.org/wiki/Q18344428","display_name":"Catecholaminergic","level":3,"score":0.7264026403427124},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.7181695699691772},{"id":"https://openalex.org/C2780972224","wikidata":"https://www.wikidata.org/wiki/Q17047956","display_name":"Brain atlas","level":2,"score":0.5854615569114685},{"id":"https://openalex.org/C22885893","wikidata":"https://www.wikidata.org/wiki/Q4862743","display_name":"Cholinergic","level":2,"score":0.5580576658248901},{"id":"https://openalex.org/C159167319","wikidata":"https://www.wikidata.org/wiki/Q420766","display_name":"Tyrosine hydroxylase","level":3,"score":0.554172158241272},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5248622894287109},{"id":"https://openalex.org/C43601244","wikidata":"https://www.wikidata.org/wiki/Q5051795","display_name":"Catecholaminergic cell groups","level":4,"score":0.47307881712913513},{"id":"https://openalex.org/C513476851","wikidata":"https://www.wikidata.org/wiki/Q170304","display_name":"Dopamine","level":2,"score":0.2645019590854645}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001921","descriptor_name":"Brain","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002795","descriptor_name":"Choline O-Acetyltransferase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002795","descriptor_name":"Choline O-Acetyltransferase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D002795","descriptor_name":"Choline O-Acetyltransferase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D009474","descriptor_name":"Neurons","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014446","descriptor_name":"Tyrosine 3-Monooxygenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014446","descriptor_name":"Tyrosine 3-Monooxygenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D014446","descriptor_name":"Tyrosine 3-Monooxygenase","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D018678","descriptor_name":"Cholinergic Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018678","descriptor_name":"Cholinergic Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018678","descriptor_name":"Cholinergic Agents","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.neuroimage.2022.119494","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2022.119494","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},{"id":"pmid:35870696","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/35870696","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":null},{"id":"pmh:oai:doaj.org/article:cb695545adc3436aaa5a9a6716983b25","is_oa":true,"landing_page_url":"https://doaj.org/article/cb695545adc3436aaa5a9a6716983b25","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"NeuroImage, Vol 260, Iss , Pp 119494- (2022)","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1016/j.neuroimage.2022.119494","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.neuroimage.2022.119494","pdf_url":null,"source":{"id":"https://openalex.org/S103225281","display_name":"NeuroImage","issn_l":"1053-8119","issn":["1053-8119","1095-9572"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"NeuroImage","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320311236","display_name":"Center for the Humanities at Tufts","ror":"https://ror.org/05wvpxv85"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1520480815","https://openalex.org/W1536900838","https://openalex.org/W1946654499","https://openalex.org/W1965626594","https://openalex.org/W1974218779","https://openalex.org/W1989056348","https://openalex.org/W1997897117","https://openalex.org/W2002069346","https://openalex.org/W2012552805","https://openalex.org/W2012602762","https://openalex.org/W2014310721","https://openalex.org/W2019361862","https://openalex.org/W2020134397","https://openalex.org/W2020745232","https://openalex.org/W2033763265","https://openalex.org/W2042076346","https://openalex.org/W2045621697","https://openalex.org/W2052465889","https://openalex.org/W2056242475","https://openalex.org/W2057940958","https://openalex.org/W2059171412","https://openalex.org/W2068291669","https://openalex.org/W2074978004","https://openalex.org/W2078757441","https://openalex.org/W2086173555","https://openalex.org/W2095996816","https://openalex.org/W2101891297","https://openalex.org/W2103838755","https://openalex.org/W2129179498","https://openalex.org/W2129928127","https://openalex.org/W2130452967","https://openalex.org/W2138044699","https://openalex.org/W2167279371","https://openalex.org/W2169408800","https://openalex.org/W2523262515","https://openalex.org/W2530403024","https://openalex.org/W2748619143","https://openalex.org/W2777126142","https://openalex.org/W2902765223","https://openalex.org/W2913485046","https://openalex.org/W2996304899","https://openalex.org/W3017304736","https://openalex.org/W3021105102","https://openalex.org/W3043037931","https://openalex.org/W3126253200","https://openalex.org/W3139087651","https://openalex.org/W3183734467","https://openalex.org/W3188628968","https://openalex.org/W3190609919","https://openalex.org/W6649712035","https://openalex.org/W6655339510","https://openalex.org/W6684638327","https://openalex.org/W6792429778","https://openalex.org/W6799812664"],"related_works":["https://openalex.org/W2090055939","https://openalex.org/W2066804224","https://openalex.org/W2034452713","https://openalex.org/W2075364053","https://openalex.org/W2019077326","https://openalex.org/W2026066424","https://openalex.org/W206612826","https://openalex.org/W2049947030","https://openalex.org/W4234120253","https://openalex.org/W2033234984"],"abstract_inverted_index":{"The":[0],"complex":[1],"organization":[2],"of":[3,18,50,86,111,136],"brain":[4,62,78,113],"regions":[5],"during":[6,115],"development":[7],"requires":[8],"a":[9,40,82,100,168],"three-dimensional":[10,35],"approach":[11],"to":[12,68,96,120,151,171],"facilitate":[13,127],"the":[14,28,46,51,60,108,116,134,158,162],"visualization":[15],"and":[16,39,55,89,178],"quantification":[17],"dynamic":[19],"changes":[20],"taking":[21],"place":[22],"throughout":[23],"this":[24],"important":[25],"period.":[26],"Using":[27],"tissue":[29],"clearing":[30],"method":[31],"combined":[32],"with":[33,176],"immunohistochemistry,":[34],"(3D)":[36],"lightsheet":[37],"microscopy":[38],"multiresolution":[41],"registration":[42],"technique,":[43],"we":[44],"provide":[45],"first":[47],"3D":[48],"atlases":[49,123],"main":[52],"cholinergic":[53],"(CH)":[54],"catecholaminergic":[56],"(CA)":[57],"systems":[58],"in":[59,76,107,141,157],"mouse":[61],"from":[63,94,118],"embryonic":[64],"day":[65,70],"12":[66],"(E12)":[67],"post-natal":[69],"8":[71],"(P8).":[72],"We":[73],"report":[74],"that":[75],"several":[77],"structures,":[79],"there":[80],"is":[81],"logarithmic":[83],"scale":[84],"increase":[85],"choline":[87],"acetyltransferase":[88],"tyrosine":[90],"hydroxylase":[91],"positive":[92],"neurons":[93,140],"E18":[95,119],"P8.":[97],"In":[98,161],"addition,":[99],"detailed":[101],"voxel-wise":[102],"analysis":[103],"revealed":[104],"abrupt":[105],"modifications":[106],"developmental":[109,128,173],"trajectory":[110],"many":[112],"structures":[114],"transition":[117],"P0.":[121],"Our":[122],"will":[124,166],"not":[125],"only":[126],"studies":[129],"aimed":[130],"at":[131],"quantitatively":[132],"determining":[133],"fate":[135],"CH":[137],"or":[138],"CA":[139],"utero":[142],"but":[143],"also":[144],"be":[145,167],"used":[146],"as":[147],"an":[148],"anatomical":[149],"reference":[150],"quantify":[152],"other":[153],"neuronal":[154],"populations":[155],"present":[156],"annotated":[159],"regions.":[160],"future,":[163],"these":[164],"maps":[165],"reliable":[169],"tool":[170],"study":[172],"malformations":[174],"associated":[175],"neurological":[177],"psychiatric":[179],"disorders.":[180]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}
