{"id":"https://openalex.org/W7154474908","doi":"https://doi.org/10.1016/j.neunet.2026.109005","title":"Deep generative framework for modeling single-cell drug perturbation response","display_name":"Deep generative framework for modeling single-cell drug perturbation response","publication_year":2026,"publication_date":"2026-04-15","ids":{"openalex":"https://openalex.org/W7154474908","doi":"https://doi.org/10.1016/j.neunet.2026.109005","pmid":"https://pubmed.ncbi.nlm.nih.gov/42019216"},"language":"en","primary_location":{"id":"doi:10.1016/j.neunet.2026.109005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.neunet.2026.109005","pdf_url":null,"source":{"id":"https://openalex.org/S123019304","display_name":"Neural Networks","issn_l":"0893-6080","issn":["0893-6080","1879-2782"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Networks","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100741917","display_name":"Yongqing Zhang","orcid":"https://orcid.org/0000-0003-3422-8305"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongqing Zhang","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: zhangyq@cuit.edu.cn"],"raw_orcid":"https://orcid.org/0000-0003-3422-8305","affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: zhangyq@cuit.edu.cn","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5125111094","display_name":"Chenpeng Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Chenpeng Wu","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 316646192@qq.com"],"raw_orcid":"https://orcid.org/0009-0000-9813-1794","affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 316646192@qq.com","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070111623","display_name":"Tianhao Li","orcid":"https://orcid.org/0009-0007-2952-7788"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Tianhao Li","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 1791027235@qq.com"],"raw_orcid":"https://orcid.org/0009-0007-2952-7788","affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 1791027235@qq.com","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133684376","display_name":"Zhigan Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhigan Zhou","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 373692503@qq.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 373692503@qq.com","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Zhengxiao Huang","orcid":"https://orcid.org/0009-0007-1437-2795"},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhengxiao Huang","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 3422159846@qq.com"],"raw_orcid":"https://orcid.org/0009-0007-1437-2795","affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 3422159846@qq.com","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5133639008","display_name":"Aochen Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I24201400","display_name":"Chengdu University of Information Technology","ror":"https://ror.org/01yxwrh59","country_code":"CN","type":"education","lineage":["https://openalex.org/I24201400"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Aochen Zhang","raw_affiliation_strings":["School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 1935008915@qq.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Chengdu University of Information Technology, Chengdu, 610225, China. Electronic address: 1935008915@qq.com","institution_ids":["https://openalex.org/I24201400"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5133666426","display_name":"Zixuan Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I24185976","display_name":"Sichuan University","ror":"https://ror.org/011ashp19","country_code":"CN","type":"education","lineage":["https://openalex.org/I24185976"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zixuan Wang","raw_affiliation_strings":["College of Electronics and Information Engineering, Sichuan University, Chengdu, 610065, China. Electronic address: zixuan98@stu.scu.edu.cn"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Electronics and Information Engineering, Sichuan University, Chengdu, 610065, China. Electronic address: zixuan98@stu.scu.edu.cn","institution_ids":["https://openalex.org/I24185976"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5133666426"],"corresponding_institution_ids":["https://openalex.org/I24185976"],"apc_list":{"value":3350,"currency":"USD","value_usd":3350},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.38913617,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"202","issue":null,"first_page":"109005","last_page":"109005"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.32100000977516174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.32100000977516174,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.20309999585151672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.04910000041127205,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/perturbation","display_name":"Perturbation (astronomy)","score":0.4765999913215637},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.3776000142097473},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.37279999256134033},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.3617999851703644},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.3361999988555908}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5921000242233276},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.570900022983551},{"id":"https://openalex.org/C177918212","wikidata":"https://www.wikidata.org/wiki/Q803623","display_name":"Perturbation (astronomy)","level":2,"score":0.4765999913215637},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.41769999265670776},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.3776000142097473},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.37279999256134033},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.3617999851703644},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.3361999988555908},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.31119999289512634},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.29510000348091125},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27219998836517334},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.2563999891281128},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.2551000118255615}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000092386","descriptor_name":"Single-Cell Gene Expression Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098842","descriptor_name":"Generative Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059010","descriptor_name":"Single-Cell Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":"Q000187","qualifier_name":"drug effects","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.neunet.2026.109005","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.neunet.2026.109005","pdf_url":null,"source":{"id":"https://openalex.org/S123019304","display_name":"Neural Networks","issn_l":"0893-6080","issn":["0893-6080","1879-2782"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural Networks","raw_type":"journal-article"},{"id":"pmid:42019216","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42019216","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Neural networks : the official journal of the International Neural Network Society","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2057560828","display_name":null,"funder_award_id":"2026NSFSC0419","funder_id":"https://openalex.org/F4320333335","funder_display_name":"Sichuan Province Science and Technology Support Program"},{"id":"https://openalex.org/G8617958116","display_name":null,"funder_award_id":"62272067","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320333335","display_name":"Sichuan Province Science and Technology Support Program","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1975147762","https://openalex.org/W2612467560","https://openalex.org/W2952382191","https://openalex.org/W2953866345","https://openalex.org/W2965552103","https://openalex.org/W2986624514","https://openalex.org/W2993905360","https://openalex.org/W3002417351","https://openalex.org/W3037518185","https://openalex.org/W3095769488","https://openalex.org/W3102434595","https://openalex.org/W3215470628","https://openalex.org/W4210403261","https://openalex.org/W4296029724","https://openalex.org/W4311474543","https://openalex.org/W4321021082","https://openalex.org/W4322494657","https://openalex.org/W4367627969","https://openalex.org/W4375955255","https://openalex.org/W4380730494","https://openalex.org/W4385760593","https://openalex.org/W4387130479","https://openalex.org/W4387529420","https://openalex.org/W4387764879","https://openalex.org/W4388217091","https://openalex.org/W4390880427","https://openalex.org/W4396812985","https://openalex.org/W4396857128","https://openalex.org/W4396921607","https://openalex.org/W4401586123","https://openalex.org/W4403784877","https://openalex.org/W4406268375","https://openalex.org/W4406920648","https://openalex.org/W4407391541","https://openalex.org/W4415660282","https://openalex.org/W4416358945","https://openalex.org/W7133201578","https://openalex.org/W7133243348"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-07-19T07:52:34.831488","created_date":"2026-04-16T00:00:00"}
