{"id":"https://openalex.org/W7133117978","doi":"https://doi.org/10.1016/j.knosys.2026.115587","title":"Zero-shot learning with subsequence reordering pretraining for compound-protein interaction","display_name":"Zero-shot learning with subsequence reordering pretraining for compound-protein interaction","publication_year":2026,"publication_date":"2026-03-01","ids":{"openalex":"https://openalex.org/W7133117978","doi":"https://doi.org/10.1016/j.knosys.2026.115587"},"language":"en","primary_location":{"id":"doi:10.1016/j.knosys.2026.115587","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.knosys.2026.115587","pdf_url":null,"source":{"id":"https://openalex.org/S10169007","display_name":"Knowledge-Based Systems","issn_l":"0950-7051","issn":["0950-7051","1872-7409"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Knowledge-Based Systems","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5127772546","display_name":"Hongzhi Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hongzhi Zhang","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0009-0002-3726-5056","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127761527","display_name":"Zhonglie Liu","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhonglie Liu","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0009-0007-2704-7131","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127754607","display_name":"Kun Meng","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Kun Meng","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127738012","display_name":"Jiameng Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jiameng Chen","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0009-0004-3414-3621","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127772526","display_name":"Jia Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I99043593","display_name":"Macquarie University","ror":"https://ror.org/01sf06y89","country_code":"AU","type":"education","lineage":["https://openalex.org/I99043593"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Jia Wu","raw_affiliation_strings":["Macquarie University, Sydney, Australia"],"raw_orcid":"https://orcid.org/0000-0002-1371-5801","affiliations":[{"raw_affiliation_string":"Macquarie University, Sydney, Australia","institution_ids":["https://openalex.org/I99043593"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5127760534","display_name":"Bo Du","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Bo Du","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China"],"raw_orcid":"https://orcid.org/0000-0001-8104-3448","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Di Lin","orcid":"https://orcid.org/0009-0000-9088-9613"},"institutions":[{"id":"https://openalex.org/I64449678","display_name":"Putian University","ror":"https://ror.org/00jmsxk74","country_code":"CN","type":"education","lineage":["https://openalex.org/I64449678"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Di Lin","raw_affiliation_strings":["Engineering Research Center for Big Data Application in Private Health Medicine of Fujian Universities, Putian University, Putian, China"],"raw_orcid":"https://orcid.org/0009-0000-9088-9613","affiliations":[{"raw_affiliation_string":"Engineering Research Center for Big Data Application in Private Health Medicine of Fujian Universities, Putian University, Putian, China","institution_ids":["https://openalex.org/I64449678"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5113750617","display_name":"Yan Che","orcid":"https://orcid.org/0000-0002-2312-8985"},"institutions":[{"id":"https://openalex.org/I64449678","display_name":"Putian University","ror":"https://ror.org/00jmsxk74","country_code":"CN","type":"education","lineage":["https://openalex.org/I64449678"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Yan Che","raw_affiliation_strings":["Engineering Research Center for Big Data Application in Private Health Medicine of Fujian Universities, Putian University, Putian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Engineering Research Center for Big Data Application in Private Health Medicine of Fujian Universities, Putian University, Putian, China","institution_ids":["https://openalex.org/I64449678"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5127746804","display_name":"Wenbin Hu","orcid":null},"institutions":[{"id":"https://openalex.org/I37461747","display_name":"Wuhan University","ror":"https://ror.org/033vjfk17","country_code":"CN","type":"education","lineage":["https://openalex.org/I37461747"]},{"id":"https://openalex.org/I4210105229","display_name":"City University of Hong Kong, Shenzhen Research Institute","ror":"https://ror.org/00xc0ma20","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210105229"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Wenbin Hu","raw_affiliation_strings":["School of Computer Science, Wuhan University, Wuhan, China","Wuhan University Shenzhen Research Institute, Shenzhen, China"],"raw_orcid":"https://orcid.org/0000-0002-9258-3850","affiliations":[{"raw_affiliation_string":"School of Computer Science, Wuhan University, Wuhan, China","institution_ids":["https://openalex.org/I37461747"]},{"raw_affiliation_string":"Wuhan University Shenzhen Research Institute, Shenzhen, China","institution_ids":["https://openalex.org/I4210105229","https://openalex.org/I37461747"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5113750617","https://openalex.org/A5127746804"],"corresponding_institution_ids":["https://openalex.org/I37461747","https://openalex.org/I4210105229","https://openalex.org/I64449678"],"apc_list":{"value":3130,"currency":"USD","value_usd":3130},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.41923689,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"339","issue":null,"first_page":"115587","last_page":"115587"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.4781999886035919,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11307","display_name":"Domain Adaptation and Few-Shot Learning","score":0.4781999886035919,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.07039999961853027,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0364999994635582,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subsequence","display_name":"Subsequence","score":0.8277999758720398},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5958999991416931},{"id":"https://openalex.org/keywords/baseline","display_name":"Baseline (sea)","score":0.5726000070571899},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.551800012588501},{"id":"https://openalex.org/keywords/structured-prediction","display_name":"Structured prediction","score":0.519599974155426},{"id":"https://openalex.org/keywords/limiting","display_name":"Limiting","score":0.4449999928474426},{"id":"https://openalex.org/keywords/training-set","display_name":"Training set","score":0.42739999294281006}],"concepts":[{"id":"https://openalex.org/C137877099","wikidata":"https://www.wikidata.org/wiki/Q1332977","display_name":"Subsequence","level":3,"score":0.8277999758720398},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7178999781608582},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6305999755859375},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5986999869346619},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5958999991416931},{"id":"https://openalex.org/C12725497","wikidata":"https://www.wikidata.org/wiki/Q810247","display_name":"Baseline (sea)","level":2,"score":0.5726000070571899},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.551800012588501},{"id":"https://openalex.org/C22367795","wikidata":"https://www.wikidata.org/wiki/Q7625208","display_name":"Structured prediction","level":2,"score":0.519599974155426},{"id":"https://openalex.org/C188198153","wikidata":"https://www.wikidata.org/wiki/Q1613840","display_name":"Limiting","level":2,"score":0.4449999928474426},{"id":"https://openalex.org/C51632099","wikidata":"https://www.wikidata.org/wiki/Q3985153","display_name":"Training set","level":2,"score":0.42739999294281006},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.37529999017715454},{"id":"https://openalex.org/C185874996","wikidata":"https://www.wikidata.org/wiki/Q269699","display_name":"Interdependence","level":2,"score":0.36980000138282776},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.3578999936580658},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3061999976634979},{"id":"https://openalex.org/C168167062","wikidata":"https://www.wikidata.org/wiki/Q1117970","display_name":"Component (thermodynamics)","level":2,"score":0.3059000074863434},{"id":"https://openalex.org/C2779304628","wikidata":"https://www.wikidata.org/wiki/Q3503480","display_name":"Face (sociological concept)","level":2,"score":0.2881999909877777},{"id":"https://openalex.org/C2778915421","wikidata":"https://www.wikidata.org/wiki/Q3643177","display_name":"Performance improvement","level":2,"score":0.28619998693466187},{"id":"https://openalex.org/C2778572836","wikidata":"https://www.wikidata.org/wiki/Q380933","display_name":"Space (punctuation)","level":2,"score":0.262800008058548},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.2515999972820282}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.knosys.2026.115587","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.knosys.2026.115587","pdf_url":null,"source":{"id":"https://openalex.org/S10169007","display_name":"Knowledge-Based Systems","issn_l":"0950-7051","issn":["0950-7051","1872-7409"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Knowledge-Based Systems","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Zero hunger","score":0.4193213880062103,"id":"https://metadata.un.org/sdg/2"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320324202","display_name":"Guangdong Science and Technology Department","ror":"https://ror.org/00tjzgn92"},{"id":"https://openalex.org/F4320326529","display_name":"Putian University","ror":"https://ror.org/00jmsxk74"},{"id":"https://openalex.org/F4320330031","display_name":"Science and Technology Department of Hubei Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":29,"referenced_works":["https://openalex.org/W1990056477","https://openalex.org/W1990283121","https://openalex.org/W2014050554","https://openalex.org/W2031903428","https://openalex.org/W2035585923","https://openalex.org/W2045777307","https://openalex.org/W2061042699","https://openalex.org/W2074231493","https://openalex.org/W2086286404","https://openalex.org/W2143210482","https://openalex.org/W2204695023","https://openalex.org/W2785947426","https://openalex.org/W2860192827","https://openalex.org/W2889326414","https://openalex.org/W2899788782","https://openalex.org/W3005769002","https://openalex.org/W3042517483","https://openalex.org/W3096561213","https://openalex.org/W3117081956","https://openalex.org/W3146944767","https://openalex.org/W3206585172","https://openalex.org/W4205773061","https://openalex.org/W4296777853","https://openalex.org/W4308463927","https://openalex.org/W4309728351","https://openalex.org/W4318981550","https://openalex.org/W4327550249","https://openalex.org/W4401305800","https://openalex.org/W4401532898"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-06T06:45:51.903784","created_date":"2026-03-02T00:00:00"}
