{"id":"https://openalex.org/W7141312831","doi":"https://doi.org/10.1016/j.jbi.2026.105034","title":"A study of large language models for patient information extraction: Model architecture, fine-tuning strategy, and multi-task instruction tuning","display_name":"A study of large language models for patient information extraction: Model architecture, fine-tuning strategy, and multi-task instruction tuning","publication_year":2026,"publication_date":"2026-03-27","ids":{"openalex":"https://openalex.org/W7141312831","doi":"https://doi.org/10.1016/j.jbi.2026.105034","pmid":"https://pubmed.ncbi.nlm.nih.gov/41905520"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2026.105034","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2026.105034","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5130740002","display_name":"Cheng Peng","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Cheng Peng","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-1994-893X","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130758260","display_name":"Xinyu Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I188524465","display_name":"University of Selangor","ror":"https://ror.org/03j4n8s31","country_code":"MY","type":"education","lineage":["https://openalex.org/I188524465"]}],"countries":["MY"],"is_corresponding":false,"raw_author_name":"Xinyu Dong","raw_affiliation_strings":["Selfii Co., USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Selfii Co., USA","institution_ids":["https://openalex.org/I188524465"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130731778","display_name":"Mengxian Lyu","orcid":null},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mengxian Lyu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0009-0002-1833-0844","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081533262","display_name":"Daniel Paredes","orcid":"https://orcid.org/0000-0002-2681-2256"},"institutions":[{"id":"https://openalex.org/I33213144","display_name":"University of Florida","ror":"https://ror.org/02y3ad647","country_code":"US","type":"education","lineage":["https://openalex.org/I33213144"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Daniel Paredes","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I33213144"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5130798076","display_name":"Yaoyun Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I188524465","display_name":"University of Selangor","ror":"https://ror.org/03j4n8s31","country_code":"MY","type":"education","lineage":["https://openalex.org/I188524465"]}],"countries":["MY"],"is_corresponding":true,"raw_author_name":"Yaoyun Zhang","raw_affiliation_strings":["Selfii Co., USA. Electronic address: yaoyun.zhang@selfii.com"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Selfii Co., USA. Electronic address: yaoyun.zhang@selfii.com","institution_ids":["https://openalex.org/I188524465"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5130807454","display_name":"Yonghui Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I94062374","display_name":"Florida College","ror":"https://ror.org/010bgev76","country_code":"US","type":"education","lineage":["https://openalex.org/I94062374"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Yonghui Wu","raw_affiliation_strings":["Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA; Preston A. Wells, Jr. Center for Brain Tumor Therapy, Lillian S. Wells Department of Neurosurgery, University of Florida, Gainesville, FL, USA. Electronic address: yonghui.wu@ufl.edu"],"raw_orcid":"https://orcid.org/0000-0002-6780-6135","affiliations":[{"raw_affiliation_string":"Department of Health Outcomes and Biomedical Informatics, College of Medicine, University of Florida, Gainesville, FL, USA; Preston A. Wells, Jr. Center for Brain Tumor Therapy, Lillian S. Wells Department of Neurosurgery, University of Florida, Gainesville, FL, USA. Electronic address: yonghui.wu@ufl.edu","institution_ids":["https://openalex.org/I94062374"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5130798076","https://openalex.org/A5130807454"],"corresponding_institution_ids":["https://openalex.org/I188524465","https://openalex.org/I94062374"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.65608278,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"178","issue":null,"first_page":"105034","last_page":"105034"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1988999992609024,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.1988999992609024,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.19850000739097595,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12031","display_name":"Speech and dialogue systems","score":0.11230000108480453,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/language-model","display_name":"Language model","score":0.4553000032901764},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.31060001254081726},{"id":"https://openalex.org/keywords/information-model","display_name":"Information model","score":0.3019999861717224},{"id":"https://openalex.org/keywords/natural-language","display_name":"Natural language","score":0.29319998621940613},{"id":"https://openalex.org/keywords/control","display_name":"Control (management)","score":0.2687000036239624},{"id":"https://openalex.org/keywords/information-system","display_name":"Information system","score":0.2671999931335449}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8016999959945679},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4717000126838684},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.45669999718666077},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4553000032901764},{"id":"https://openalex.org/C107457646","wikidata":"https://www.wikidata.org/wiki/Q207434","display_name":"Human\u2013computer interaction","level":1,"score":0.33629998564720154},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.31060001254081726},{"id":"https://openalex.org/C21338462","wikidata":"https://www.wikidata.org/wiki/Q1662581","display_name":"Information model","level":2,"score":0.3019999861717224},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.29319998621940613},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.2842999994754791},{"id":"https://openalex.org/C2775924081","wikidata":"https://www.wikidata.org/wiki/Q55608371","display_name":"Control (management)","level":2,"score":0.2687000036239624},{"id":"https://openalex.org/C180198813","wikidata":"https://www.wikidata.org/wiki/Q121182","display_name":"Information system","level":2,"score":0.2671999931335449},{"id":"https://openalex.org/C26517878","wikidata":"https://www.wikidata.org/wiki/Q228039","display_name":"Key (lock)","level":2,"score":0.26489999890327454},{"id":"https://openalex.org/C67186912","wikidata":"https://www.wikidata.org/wiki/Q367664","display_name":"Data modeling","level":2,"score":0.26159998774528503},{"id":"https://openalex.org/C179603123","wikidata":"https://www.wikidata.org/wiki/Q1941921","display_name":"Modeling language","level":3,"score":0.2574999928474426},{"id":"https://openalex.org/C2983448237","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Language understanding","level":2,"score":0.25}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jbi.2026.105034","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2026.105034","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:41905520","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41905520","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/4","score":0.592771589756012,"display_name":"Quality Education"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320308927","display_name":"Patient-Centered Outcomes Research Institute","ror":"https://ror.org/014q65q44"},{"id":"https://openalex.org/F4320337337","display_name":"National Institute on Aging","ror":"https://ror.org/049v75w11"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337347","display_name":"National Institute on Drug Abuse","ror":"https://ror.org/00fq5cm18"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320337355","display_name":"National Institute of Allergy and Infectious Diseases","ror":"https://ror.org/043z4tv69"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":27,"referenced_works":["https://openalex.org/W1672757658","https://openalex.org/W2033115336","https://openalex.org/W2109206523","https://openalex.org/W2114039834","https://openalex.org/W2132724073","https://openalex.org/W2137407193","https://openalex.org/W2168041406","https://openalex.org/W2770096843","https://openalex.org/W2902516827","https://openalex.org/W2911489562","https://openalex.org/W2955483668","https://openalex.org/W2979250794","https://openalex.org/W3011411500","https://openalex.org/W3094834348","https://openalex.org/W3095092693","https://openalex.org/W4220989182","https://openalex.org/W4308590518","https://openalex.org/W4312220150","https://openalex.org/W4321002059","https://openalex.org/W4366824871","https://openalex.org/W4379379356","https://openalex.org/W4380591192","https://openalex.org/W4388725043","https://openalex.org/W4394794357","https://openalex.org/W4403420208","https://openalex.org/W4404486407","https://openalex.org/W4408307058"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-28T14:05:53.105641","created_date":"2026-03-28T00:00:00"}
