{"id":"https://openalex.org/W7124278958","doi":"https://doi.org/10.1016/j.jbi.2026.104985","title":"DMDGRN: A data augmentation-based multilayer directed graph convolutional network for gene regulatory network inference","display_name":"DMDGRN: A data augmentation-based multilayer directed graph convolutional network for gene regulatory network inference","publication_year":2026,"publication_date":"2026-01-15","ids":{"openalex":"https://openalex.org/W7124278958","doi":"https://doi.org/10.1016/j.jbi.2026.104985","pmid":"https://pubmed.ncbi.nlm.nih.gov/41544912"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2026.104985","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2026.104985","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085214222","display_name":"Pi-Jing Wei","orcid":"https://orcid.org/0000-0003-2770-8781"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Pi-Jing Wei","raw_affiliation_strings":["The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China"],"affiliations":[{"raw_affiliation_string":"The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123103147","display_name":"Mingzhu Sun","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingzhu Sun","raw_affiliation_strings":["The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China"],"affiliations":[{"raw_affiliation_string":"The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102525589","display_name":"Zheng Ding","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zheng Ding","raw_affiliation_strings":["The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China"],"affiliations":[{"raw_affiliation_string":"The Key Laboratory of Intelligent Computing and Signal Processing of Ministry of Education, Institute of Physical Science and Information Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101959312","display_name":"Ruifen Cao","orcid":"https://orcid.org/0000-0002-4223-3422"},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Rui-Fen Cao","raw_affiliation_strings":["School of Computer Science and Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China"],"affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China","institution_ids":["https://openalex.org/I143868143"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5123067421","display_name":"Zhen Gao","orcid":null},"institutions":[{"id":"https://openalex.org/I56934997","display_name":"Changsha University of Science and Technology","ror":"https://ror.org/03yph8055","country_code":"CN","type":"education","lineage":["https://openalex.org/I56934997"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zhen Gao","raw_affiliation_strings":["School of Computer and Communication Engineering, Changsha University of Science and Technology, 410076 Changsha, China. Electronic address: gaozhenchn@163.com"],"affiliations":[{"raw_affiliation_string":"School of Computer and Communication Engineering, Changsha University of Science and Technology, 410076 Changsha, China. Electronic address: gaozhenchn@163.com","institution_ids":["https://openalex.org/I56934997"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123082429","display_name":"Chun-Hou Zheng","orcid":null},"institutions":[{"id":"https://openalex.org/I143868143","display_name":"Anhui University","ror":"https://ror.org/05th6yx34","country_code":"CN","type":"education","lineage":["https://openalex.org/I143868143"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Chun-Hou Zheng","raw_affiliation_strings":["School of Artificial Intelligence, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China. Electronic address: zhengch99@126.com"],"affiliations":[{"raw_affiliation_string":"School of Artificial Intelligence, Anhui University, 111 Jiulong Road, Hefei 230601, Anhui, China. Electronic address: zhengch99@126.com","institution_ids":["https://openalex.org/I143868143"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5123067421","https://openalex.org/A5123082429"],"corresponding_institution_ids":["https://openalex.org/I143868143","https://openalex.org/I56934997"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.15912739,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"175","issue":null,"first_page":"104985","last_page":"104985"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7045999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.7045999765396118,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.06279999762773514,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.05429999902844429,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7078999876976013},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6209999918937683},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5167999863624573},{"id":"https://openalex.org/keywords/directed-graph","display_name":"Directed graph","score":0.36160001158714294},{"id":"https://openalex.org/keywords/systems-biology","display_name":"Systems biology","score":0.3522999882698059},{"id":"https://openalex.org/keywords/regulation-of-gene-expression","display_name":"Regulation of gene expression","score":0.34869998693466187},{"id":"https://openalex.org/keywords/directed-acyclic-graph","display_name":"Directed acyclic graph","score":0.3425999879837036}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7261999845504761},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7078999876976013},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6209999918937683},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5167999863624573},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4153999984264374},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3939000070095062},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3804999887943268},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36890000104904175},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.36160001158714294},{"id":"https://openalex.org/C152662350","wikidata":"https://www.wikidata.org/wiki/Q815297","display_name":"Systems biology","level":2,"score":0.3522999882698059},{"id":"https://openalex.org/C165864922","wikidata":"https://www.wikidata.org/wiki/Q411391","display_name":"Regulation of gene expression","level":3,"score":0.34869998693466187},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.3425999879837036},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.3328000009059906},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.31459999084472656},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.2964000105857849},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.28690001368522644},{"id":"https://openalex.org/C164614171","wikidata":"https://www.wikidata.org/wiki/Q5204775","display_name":"DECIPHER","level":2,"score":0.27379998564720154},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2547999918460846},{"id":"https://openalex.org/C32946077","wikidata":"https://www.wikidata.org/wiki/Q618079","display_name":"Network analysis","level":2,"score":0.2540000081062317}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jbi.2026.104985","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2026.104985","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:41544912","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41544912","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.5808296799659729,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":44,"referenced_works":["https://openalex.org/W1986688807","https://openalex.org/W2115664087","https://openalex.org/W2125910575","https://openalex.org/W2142105072","https://openalex.org/W2142836135","https://openalex.org/W2151684691","https://openalex.org/W2156716434","https://openalex.org/W2159675211","https://openalex.org/W2161409973","https://openalex.org/W2175370850","https://openalex.org/W2232370058","https://openalex.org/W2332016763","https://openalex.org/W2345356016","https://openalex.org/W2561884319","https://openalex.org/W2768422310","https://openalex.org/W2782454362","https://openalex.org/W2803394774","https://openalex.org/W2803928488","https://openalex.org/W2809871030","https://openalex.org/W2899545492","https://openalex.org/W2996140569","https://openalex.org/W2997831639","https://openalex.org/W3031273498","https://openalex.org/W3035739162","https://openalex.org/W3095716988","https://openalex.org/W3159076767","https://openalex.org/W3186348651","https://openalex.org/W3202248730","https://openalex.org/W3213927789","https://openalex.org/W4280626237","https://openalex.org/W4290930137","https://openalex.org/W4311142517","https://openalex.org/W4311583710","https://openalex.org/W4322502360","https://openalex.org/W4366464224","https://openalex.org/W4379117479","https://openalex.org/W4387774515","https://openalex.org/W4388870182","https://openalex.org/W4390640180","https://openalex.org/W4391126196","https://openalex.org/W4396220739","https://openalex.org/W4399740943","https://openalex.org/W4400103610","https://openalex.org/W4407638313"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-01-30T23:17:42.513302","created_date":"2026-01-16T00:00:00"}
