{"id":"https://openalex.org/W4413439801","doi":"https://doi.org/10.1016/j.jbi.2025.104898","title":"Medication information extraction using local large language models","display_name":"Medication information extraction using local large language models","publication_year":2025,"publication_date":"2025-08-22","ids":{"openalex":"https://openalex.org/W4413439801","doi":"https://doi.org/10.1016/j.jbi.2025.104898","pmid":"https://pubmed.ncbi.nlm.nih.gov/40849053"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2025.104898","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jbi.2025.104898","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.jbi.2025.104898","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085813595","display_name":"Phillip Richter-Pechanski","orcid":"https://orcid.org/0000-0003-0121-373X"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Phillip Richter-Pechanski","raw_affiliation_strings":["Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; German Center for Cardiovascular Research (DZHK) - Partner site Heidelberg/Mannheim, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Computational Linguistics, Heidelberg University, Im Neuenheimer Feld 325, 69120 Heidelberg, DE, Germany. Electronic address: phillip.richter-pechanski@med.uni-heidelberg.de"],"raw_orcid":"https://orcid.org/0000-0003-0121-373X","affiliations":[{"raw_affiliation_string":"Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; German Center for Cardiovascular Research (DZHK) - Partner site Heidelberg/Mannheim, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Computational Linguistics, Heidelberg University, Im Neuenheimer Feld 325, 69120 Heidelberg, DE, Germany. Electronic address: phillip.richter-pechanski@med.uni-heidelberg.de","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5116858851","display_name":"Marvin Seiferling","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marvin Seiferling","raw_affiliation_strings":["Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051871322","display_name":"Christina Kiriakou","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christina Kiriakou","raw_affiliation_strings":["Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032473028","display_name":"Dominic M. Schwab","orcid":null},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Dominic M. Schwab","raw_affiliation_strings":["Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062293789","display_name":"Nicolas A. Geis","orcid":"https://orcid.org/0000-0003-3431-3104"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nicolas A. Geis","raw_affiliation_strings":["Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083154676","display_name":"Christoph Dieterich","orcid":"https://orcid.org/0000-0001-9468-6311"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]},{"id":"https://openalex.org/I2802164966","display_name":"University Hospital Heidelberg","ror":"https://ror.org/013czdx64","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I2802164966"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Christoph Dieterich","raw_affiliation_strings":["Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; German Center for Cardiovascular Research (DZHK) - Partner site Heidelberg/Mannheim, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany"],"raw_orcid":"https://orcid.org/0000-0001-9468-6311","affiliations":[{"raw_affiliation_string":"Section of Bioinformatics and Systems Cardiology, Klaus Tschira Institute for Integrative Computational Cardiology, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Department of Internal Medicine III, University Hospital, Im Neuenheimer Feld 410, 69120 Heidelberg, DE, Germany; German Center for Cardiovascular Research (DZHK) - Partner site Heidelberg/Mannheim, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany; Informatics for Life, Im Neuenheimer Feld 669, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5023977688","display_name":"Anette Frank","orcid":"https://orcid.org/0000-0003-4706-9817"},"institutions":[{"id":"https://openalex.org/I223822909","display_name":"Heidelberg University","ror":"https://ror.org/038t36y30","country_code":"DE","type":"education","lineage":["https://openalex.org/I223822909"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anette Frank","raw_affiliation_strings":["Department of Computational Linguistics, Heidelberg University, Im Neuenheimer Feld 325, 69120 Heidelberg, DE, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computational Linguistics, Heidelberg University, Im Neuenheimer Feld 325, 69120 Heidelberg, DE, Germany","institution_ids":["https://openalex.org/I223822909"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5085813595"],"corresponding_institution_ids":["https://openalex.org/I223822909","https://openalex.org/I2802164966"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":{"value":2980,"currency":"USD","value_usd":2980},"fwci":7.4013,"has_fulltext":false,"cited_by_count":4,"citation_normalized_percentile":{"value":0.96942649,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"169","issue":null,"first_page":"104898","last_page":"104898"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.550000011920929,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.550000011920929,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.15790000557899475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.06300000101327896,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7165894508361816},{"id":"https://openalex.org/keywords/information-extraction","display_name":"Information extraction","score":0.5420774221420288},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4963834881782532},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.4340447187423706},{"id":"https://openalex.org/keywords/extraction","display_name":"Extraction (chemistry)","score":0.41764673590660095},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41520726680755615},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.3644735515117645}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7165894508361816},{"id":"https://openalex.org/C195807954","wikidata":"https://www.wikidata.org/wiki/Q1662562","display_name":"Information extraction","level":2,"score":0.5420774221420288},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4963834881782532},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.4340447187423706},{"id":"https://openalex.org/C4725764","wikidata":"https://www.wikidata.org/wiki/Q844704","display_name":"Extraction (chemistry)","level":2,"score":0.41764673590660095},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41520726680755615},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.3644735515117645},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0},{"id":"https://openalex.org/C43617362","wikidata":"https://www.wikidata.org/wiki/Q170050","display_name":"Chromatography","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000098342","descriptor_name":"Large Language Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D007802","descriptor_name":"Language","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jbi.2025.104898","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jbi.2025.104898","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:40849053","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/40849053","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null}],"best_oa_location":{"id":"doi:10.1016/j.jbi.2025.104898","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.jbi.2025.104898","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Quality Education","id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G3108887073","display_name":null,"funder_award_id":"DFG D1501/14-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320324316","display_name":"Klaus Tschira Stiftung","ror":"https://ror.org/052jep661"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":58,"referenced_works":["https://openalex.org/W2114668172","https://openalex.org/W2282821441","https://openalex.org/W2396881363","https://openalex.org/W2487898712","https://openalex.org/W2538585973","https://openalex.org/W2908840510","https://openalex.org/W2947903144","https://openalex.org/W2958089299","https://openalex.org/W2962862931","https://openalex.org/W2970482702","https://openalex.org/W2979250794","https://openalex.org/W3034917890","https://openalex.org/W3080429061","https://openalex.org/W3127132006","https://openalex.org/W3162922479","https://openalex.org/W3215186939","https://openalex.org/W4221166835","https://openalex.org/W4224308101","https://openalex.org/W4292779060","https://openalex.org/W4311409687","https://openalex.org/W4365514966","https://openalex.org/W4378469337","https://openalex.org/W4378509449","https://openalex.org/W4384071683","https://openalex.org/W4384561707","https://openalex.org/W4385757404","https://openalex.org/W4386566916","https://openalex.org/W4389518874","https://openalex.org/W4389524014","https://openalex.org/W4391292768","https://openalex.org/W4391577874","https://openalex.org/W4391836235","https://openalex.org/W4394780772","https://openalex.org/W4394782456","https://openalex.org/W4399785296","https://openalex.org/W4400120897","https://openalex.org/W4401044013","https://openalex.org/W4403024753","https://openalex.org/W4403945759","https://openalex.org/W4404239715","https://openalex.org/W4404782426","https://openalex.org/W4407219056","https://openalex.org/W6609311119","https://openalex.org/W6728608282","https://openalex.org/W6737947904","https://openalex.org/W6778883912","https://openalex.org/W6782563787","https://openalex.org/W6804168120","https://openalex.org/W6809683662","https://openalex.org/W6810081322","https://openalex.org/W6838431322","https://openalex.org/W6848237822","https://openalex.org/W6853251322","https://openalex.org/W6859606051","https://openalex.org/W6860392037","https://openalex.org/W6864310882","https://openalex.org/W6872619699","https://openalex.org/W6873130134"],"related_works":["https://openalex.org/W2377297411","https://openalex.org/W3148217948","https://openalex.org/W2375788636","https://openalex.org/W2358561207","https://openalex.org/W2975617233","https://openalex.org/W2388704129","https://openalex.org/W2392827053","https://openalex.org/W2377877252","https://openalex.org/W2362914816","https://openalex.org/W2368651715"],"abstract_inverted_index":{"OBJECTIVE:":[0],"Medication":[1],"information":[2,226],"is":[3,14],"crucial":[4],"for":[5,45,56,82,176,183,224],"clinical":[6,40,46,240,260],"routine":[7],"and":[8,53,67,92,99,116,134,147,158,180,234,242,249],"research.":[9],"However,":[10],"a":[11,27,39,195,238],"vast":[12],"amount":[13],"stored":[15],"in":[16,38,61,237],"unstructured":[17],"text,":[18],"such":[19],"as":[20],"doctor's":[21],"letters,":[22],"requiring":[23],"manual":[24],"extraction":[25,84],"-":[26,130,138],"resource-intensive,":[28],"error-prone":[29],"task.":[30],"Automating":[31],"this":[32],"process":[33],"comes":[34],"with":[35,155,231],"significant":[36],"constraints":[37],"setup,":[41,241],"including":[42],"the":[43,54,142,148,190],"demand":[44,55],"expertise,":[47],"limited":[48,232],"time-resources,":[49],"restricted":[50],"IT":[51,235],"infrastructure,":[52],"transparent":[57],"predictions.":[58,125],"Recent":[59],"advances":[60],"generative":[62,219],"large":[63],"language":[64],"models":[65,162],"(LLMs)":[66],"parameter-efficient":[68],"fine-tuning":[69],"methods":[70,202,223],"show":[71,214],"potential":[72],"to":[73,105,114,120,171,205],"address":[74],"these":[75],"challenges.":[76],"METHODS:":[77],"We":[78,95,109],"evaluated":[79,140],"local":[80,217],"LLMs":[81,129,220],"end-to-end":[83],"of":[85,123],"medication":[86,184,225],"information,":[87],"combining":[88],"named":[89],"entity":[90],"recognition":[91],"relation":[93],"extraction.":[94],"used":[96],"format-restricting":[97],"instructions":[98],"developed":[100],"an":[101],"innovative":[102],"feedback":[103],"pipeline":[104],"facilitate":[106],"automated":[107],"evaluation.":[108],"applied":[110],"token-level":[111],"Shapley":[112,253],"values":[113,254],"visualize":[115],"quantify":[117],"token":[118],"contributions,":[119],"improve":[121],"transparency":[122],"model":[124],"RESULTS:":[126],"Two":[127],"open-source":[128,218],"one":[131,135],"general":[132],"(Llama)":[133],"domain-specific":[136],"(OpenBioLLM)":[137],"were":[139],"on":[141,186,246],"English":[143,187,248],"n2c2":[144],"2018":[145],"corpus":[146],"German":[149,191,250],"CARDIO:DE":[150],"corpus.":[151],"OpenBioLLM":[152],"frequently":[153],"struggled":[154],"structured":[156],"outputs":[157],"hallucinations.":[159],"Fine-tuned":[160],"Llama":[161,193],"achieved":[163],"new":[164,196],"state-of-the-art":[165],"results,":[166],"improving":[167],"F1-score":[168],"by":[169,203],"up":[170,204],"10":[172],"percentage":[173],"points":[174],"(pp.)":[175],"adverse":[177],"drug":[178],"events":[179],"6":[181],"pp.":[182,207],"reasons":[185],"data.":[188,251],"On":[189],"dataset,":[192],"established":[194],"benchmark,":[197],"outperforming":[198],"traditional":[199],"machine":[200],"learning":[201],"16":[206],"micro":[208],"average":[209],"F1-score.":[210],"CONCLUSION:":[211],"Our":[212],"findings":[213],"that":[215],"fine-tuned":[216],"outperform":[221],"SOTA":[222],"extraction,":[227],"delivering":[228],"high":[229],"performance":[230],"time":[233],"resources":[236],"real-world":[239],"demonstrate":[243],"their":[244],"effectiveness":[245],"both":[247],"Applying":[252],"improved":[255],"prediction":[256],"transparency,":[257],"supporting":[258],"informed":[259],"decision-making.":[261]},"counts_by_year":[{"year":2026,"cited_by_count":4}],"updated_date":"2026-05-29T09:21:14.243279","created_date":"2025-10-10T00:00:00"}
