{"id":"https://openalex.org/W3168923590","doi":"https://doi.org/10.1016/j.jbi.2021.103838","title":"Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses","display_name":"Learning Drug-Disease-Target Embedding (DDTE) from knowledge graphs to inform drug repurposing hypotheses","publication_year":2021,"publication_date":"2021-06-11","ids":{"openalex":"https://openalex.org/W3168923590","doi":"https://doi.org/10.1016/j.jbi.2021.103838","mag":"3168923590","pmid":"https://pubmed.ncbi.nlm.nih.gov/34119691"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2021.103838","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2021.103838","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5053686285","display_name":"Changsung Moon","orcid":null},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Changsung Moon","raw_affiliation_strings":["Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058658338","display_name":"Chunming Jin","orcid":null},"institutions":[{"id":"https://openalex.org/I123127086","display_name":"North Carolina Central University","ror":"https://ror.org/051r3tx83","country_code":"US","type":"education","lineage":["https://openalex.org/I123127086"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chunming Jin","raw_affiliation_strings":["BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA"],"affiliations":[{"raw_affiliation_string":"BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA","institution_ids":["https://openalex.org/I123127086"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101105032","display_name":"Xialan Dong","orcid":null},"institutions":[{"id":"https://openalex.org/I123127086","display_name":"North Carolina Central University","ror":"https://ror.org/051r3tx83","country_code":"US","type":"education","lineage":["https://openalex.org/I123127086"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xialan Dong","raw_affiliation_strings":["BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA"],"affiliations":[{"raw_affiliation_string":"BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA","institution_ids":["https://openalex.org/I123127086"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041578441","display_name":"Saad Mohammad Abrar","orcid":"https://orcid.org/0000-0002-3037-0016"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Saad Abrar","raw_affiliation_strings":["Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030611592","display_name":"Weifan Zheng","orcid":"https://orcid.org/0000-0001-9025-7229"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I123127086","display_name":"North Carolina Central University","ror":"https://ror.org/051r3tx83","country_code":"US","type":"education","lineage":["https://openalex.org/I123127086"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Weifan Zheng","raw_affiliation_strings":["BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA; UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: wzheng@nccu.edu","UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA","BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA"],"affiliations":[{"raw_affiliation_string":"BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA; UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: wzheng@nccu.edu","institution_ids":["https://openalex.org/I123127086"]},{"raw_affiliation_string":"UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I114027177"]},{"raw_affiliation_string":"BRITE Institute and Department of Pharmaceutical Sciences, College of Health and Sciences, North Carolina Central University, Durham, NC 27707, USA","institution_ids":["https://openalex.org/I123127086"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078910758","display_name":"Rada Chirkova","orcid":"https://orcid.org/0000-0003-4249-9690"},"institutions":[{"id":"https://openalex.org/I137902535","display_name":"North Carolina State University","ror":"https://ror.org/04tj63d06","country_code":"US","type":"education","lineage":["https://openalex.org/I137902535"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Rada Y. Chirkova","raw_affiliation_strings":["Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA. Electronic address: rychirko@ncsu.edu","Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA. Electronic address: rychirko@ncsu.edu","institution_ids":["https://openalex.org/I137902535"]},{"raw_affiliation_string":"Department of Computer Science, North Carolina State University, Raleigh, NC 27695, USA","institution_ids":["https://openalex.org/I137902535"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5078536199","display_name":"Alexander Tropsha","orcid":"https://orcid.org/0000-0003-3802-8896"},"institutions":[{"id":"https://openalex.org/I114027177","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33","country_code":"US","type":"education","lineage":["https://openalex.org/I114027177"]},{"id":"https://openalex.org/I1333535994","display_name":"University of North Carolina Health Care","ror":"https://ror.org/00qz24g20","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1333535994"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander Tropsha","raw_affiliation_strings":["UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: alex_tropsha@unc.edu","UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA"],"affiliations":[{"raw_affiliation_string":"UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA. Electronic address: alex_tropsha@unc.edu","institution_ids":["https://openalex.org/I114027177","https://openalex.org/I1333535994"]},{"raw_affiliation_string":"UNC Eshelman School of Pharmacy, University of North Carolina at Chapel Hill, NC 27599, USA","institution_ids":["https://openalex.org/I114027177"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5030611592","https://openalex.org/A5078536199","https://openalex.org/A5078910758"],"corresponding_institution_ids":["https://openalex.org/I114027177","https://openalex.org/I123127086","https://openalex.org/I1333535994","https://openalex.org/I137902535"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":null,"fwci":4.2201,"has_fulltext":false,"cited_by_count":33,"citation_normalized_percentile":{"value":0.94604619,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":93,"max":99},"biblio":{"volume":"119","issue":null,"first_page":"103838","last_page":"103838"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9905999898910522,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9846000075340271,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/drug-repositioning","display_name":"Drug repositioning","score":0.6365582942962646},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6245484948158264},{"id":"https://openalex.org/keywords/mean-reciprocal-rank","display_name":"Mean reciprocal rank","score":0.5641718506813049},{"id":"https://openalex.org/keywords/predicate","display_name":"Predicate (mathematical logic)","score":0.5540744066238403},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5447564721107483},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5120633244514465},{"id":"https://openalex.org/keywords/support-vector-machine","display_name":"Support vector machine","score":0.4560219943523407},{"id":"https://openalex.org/keywords/object","display_name":"Object (grammar)","score":0.422497421503067},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.4206928014755249},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.41875216364860535},{"id":"https://openalex.org/keywords/drug","display_name":"Drug","score":0.3878902494907379},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2674756646156311},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.23897483944892883}],"concepts":[{"id":"https://openalex.org/C103637391","wikidata":"https://www.wikidata.org/wiki/Q5308921","display_name":"Drug repositioning","level":3,"score":0.6365582942962646},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6245484948158264},{"id":"https://openalex.org/C44083865","wikidata":"https://www.wikidata.org/wiki/Q3853443","display_name":"Mean reciprocal rank","level":2,"score":0.5641718506813049},{"id":"https://openalex.org/C140146324","wikidata":"https://www.wikidata.org/wiki/Q1144319","display_name":"Predicate (mathematical logic)","level":2,"score":0.5540744066238403},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5447564721107483},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5120633244514465},{"id":"https://openalex.org/C12267149","wikidata":"https://www.wikidata.org/wiki/Q282453","display_name":"Support vector machine","level":2,"score":0.4560219943523407},{"id":"https://openalex.org/C2781238097","wikidata":"https://www.wikidata.org/wiki/Q175026","display_name":"Object (grammar)","level":2,"score":0.422497421503067},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4206928014755249},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.41875216364860535},{"id":"https://openalex.org/C2780035454","wikidata":"https://www.wikidata.org/wiki/Q8386","display_name":"Drug","level":2,"score":0.3878902494907379},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2674756646156311},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.23897483944892883},{"id":"https://openalex.org/C118552586","wikidata":"https://www.wikidata.org/wiki/Q7867","display_name":"Psychiatry","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D004364","descriptor_name":"Pharmaceutical Preparations","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010363","descriptor_name":"Pattern Recognition, Automated","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019359","descriptor_name":"Knowledge","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058492","descriptor_name":"Drug Repositioning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.jbi.2021.103838","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2021.103838","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:34119691","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/34119691","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[{"score":0.6700000166893005,"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320332600","display_name":"University of North Carolina at Chapel Hill","ror":"https://ror.org/0130frc33"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":46,"referenced_works":["https://openalex.org/W74439177","https://openalex.org/W792740904","https://openalex.org/W1971106435","https://openalex.org/W1998898494","https://openalex.org/W2019543926","https://openalex.org/W2029348196","https://openalex.org/W2042110087","https://openalex.org/W2071658986","https://openalex.org/W2080754816","https://openalex.org/W2122863289","https://openalex.org/W2127795553","https://openalex.org/W2139736926","https://openalex.org/W2142572836","https://openalex.org/W2146502635","https://openalex.org/W2162993582","https://openalex.org/W2170146596","https://openalex.org/W2284013959","https://openalex.org/W2336207313","https://openalex.org/W2558366645","https://openalex.org/W2582845471","https://openalex.org/W2753953057","https://openalex.org/W2759001560","https://openalex.org/W2781993106","https://openalex.org/W2783293389","https://openalex.org/W2792611922","https://openalex.org/W2916047525","https://openalex.org/W2920069053","https://openalex.org/W2962756421","https://openalex.org/W2977707586","https://openalex.org/W2979948016","https://openalex.org/W2985331920","https://openalex.org/W2989884055","https://openalex.org/W2990374909","https://openalex.org/W3000478925","https://openalex.org/W3031273498","https://openalex.org/W3091756663","https://openalex.org/W3112755591","https://openalex.org/W3148579566","https://openalex.org/W4297571622","https://openalex.org/W6622728755","https://openalex.org/W6657916882","https://openalex.org/W6678830454","https://openalex.org/W6681435938","https://openalex.org/W6707620307","https://openalex.org/W6744696937","https://openalex.org/W6775571235"],"related_works":["https://openalex.org/W4281673370","https://openalex.org/W4206422705","https://openalex.org/W2886266969","https://openalex.org/W4366527864","https://openalex.org/W4287114073","https://openalex.org/W2903687253","https://openalex.org/W2006667691","https://openalex.org/W2081900870","https://openalex.org/W2111662069","https://openalex.org/W3174741986"],"abstract_inverted_index":null,"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":10},{"year":2022,"cited_by_count":7},{"year":2021,"cited_by_count":2}],"updated_date":"2026-03-10T14:07:55.174380","created_date":"2025-10-10T00:00:00"}
