{"id":"https://openalex.org/W2885066297","doi":"https://doi.org/10.1016/j.jbi.2018.08.002","title":"Trie-based rule processing for clinical NLP: A use-case study of n-trie, making the ConText algorithm more efficient and scalable","display_name":"Trie-based rule processing for clinical NLP: A use-case study of n-trie, making the ConText algorithm more efficient and scalable","publication_year":2018,"publication_date":"2018-08-06","ids":{"openalex":"https://openalex.org/W2885066297","doi":"https://doi.org/10.1016/j.jbi.2018.08.002","mag":"2885066297","pmid":"https://pubmed.ncbi.nlm.nih.gov/30092358"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2018.08.002","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2018.08.002","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["arxiv","crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://arxiv.org/pdf/1905.00079","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111907129","display_name":"Jianlin Shi","orcid":null},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Jianlin Shi","raw_affiliation_strings":["Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA. Electronic address: jianlin.shi@utah.edu","Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA. Electronic address: jianlin.shi@utah.edu","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5068166269","display_name":"John F. Hurdle","orcid":"https://orcid.org/0000-0002-1188-7685"},"institutions":[{"id":"https://openalex.org/I223532165","display_name":"University of Utah","ror":"https://ror.org/03r0ha626","country_code":"US","type":"education","lineage":["https://openalex.org/I223532165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"John F. Hurdle","raw_affiliation_strings":["Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA. Electronic address: john.hurdle@utah.edu","Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA"],"affiliations":[{"raw_affiliation_string":"Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA. Electronic address: john.hurdle@utah.edu","institution_ids":["https://openalex.org/I223532165"]},{"raw_affiliation_string":"Department of in Biomedical Informatics, University of Utah, Salt Lake City, UT, USA","institution_ids":["https://openalex.org/I223532165"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5111907129"],"corresponding_institution_ids":["https://openalex.org/I223532165"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":null,"fwci":1.0239,"has_fulltext":false,"cited_by_count":27,"citation_normalized_percentile":{"value":0.76181273,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":91,"max":99},"biblio":{"volume":"85","issue":null,"first_page":"106","last_page":"113"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.998199999332428,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.9937999844551086,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13702","display_name":"Machine Learning in Healthcare","score":0.9797000288963318,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/trie","display_name":"Trie","score":0.8939456939697266},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8318465948104858},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.627497673034668},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.5510320663452148},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5432897210121155},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5394495129585266},{"id":"https://openalex.org/keywords/rule-based-system","display_name":"Rule-based system","score":0.47534629702568054},{"id":"https://openalex.org/keywords/natural-language-processing","display_name":"Natural language processing","score":0.4308122992515564},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.3993915617465973},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.16394588351249695},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1613229215145111},{"id":"https://openalex.org/keywords/data-structure","display_name":"Data structure","score":0.1454296112060547}],"concepts":[{"id":"https://openalex.org/C190290938","wikidata":"https://www.wikidata.org/wiki/Q387015","display_name":"Trie","level":3,"score":0.8939456939697266},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8318465948104858},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.627497673034668},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.5510320663452148},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5432897210121155},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5394495129585266},{"id":"https://openalex.org/C149271511","wikidata":"https://www.wikidata.org/wiki/Q1417149","display_name":"Rule-based system","level":2,"score":0.47534629702568054},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.4308122992515564},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.3993915617465973},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.16394588351249695},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1613229215145111},{"id":"https://openalex.org/C162319229","wikidata":"https://www.wikidata.org/wiki/Q175263","display_name":"Data structure","level":2,"score":0.1454296112060547},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000069550","descriptor_name":"Machine Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1016/j.jbi.2018.08.002","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2018.08.002","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:30092358","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/30092358","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null},{"id":"pmh:oai:arXiv.org:1905.00079","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.00079","pdf_url":"https://arxiv.org/pdf/1905.00079","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:5676989","is_oa":false,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/6171746","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:arXiv.org:1905.00079","is_oa":true,"landing_page_url":"http://arxiv.org/abs/1905.00079","pdf_url":"https://arxiv.org/pdf/1905.00079","source":{"id":"https://openalex.org/S4306400194","display_name":"arXiv (Cornell University)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I205783295","host_organization_name":"Cornell University","host_organization_lineage":["https://openalex.org/I205783295"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},"sustainable_development_goals":[{"display_name":"Quality Education","score":0.6800000071525574,"id":"https://metadata.un.org/sdg/4"}],"awards":[{"id":"https://openalex.org/G1846549054","display_name":null,"funder_award_id":"5R01LM010981","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337372","display_name":"U.S. National Library of Medicine","ror":"https://ror.org/0060t0j89"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":28,"referenced_works":["https://openalex.org/W20093822","https://openalex.org/W40385435","https://openalex.org/W144923133","https://openalex.org/W180510140","https://openalex.org/W1964625659","https://openalex.org/W1971954596","https://openalex.org/W1982464493","https://openalex.org/W2004910511","https://openalex.org/W2035266017","https://openalex.org/W2039691998","https://openalex.org/W2065275020","https://openalex.org/W2101891738","https://openalex.org/W2105827650","https://openalex.org/W2110256524","https://openalex.org/W2114039834","https://openalex.org/W2114388055","https://openalex.org/W2115915625","https://openalex.org/W2123564229","https://openalex.org/W2139865360","https://openalex.org/W2142786899","https://openalex.org/W2143902665","https://openalex.org/W2155512447","https://openalex.org/W2403444297","https://openalex.org/W2754980949","https://openalex.org/W4247002863","https://openalex.org/W6605982339","https://openalex.org/W6607434451","https://openalex.org/W6660054908"],"related_works":["https://openalex.org/W104884668","https://openalex.org/W2120071517","https://openalex.org/W3112332783","https://openalex.org/W2406489341","https://openalex.org/W2344797854","https://openalex.org/W2113746559","https://openalex.org/W2080508516","https://openalex.org/W180471195","https://openalex.org/W2029271007","https://openalex.org/W4220850540"],"abstract_inverted_index":null,"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":9},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":4}],"updated_date":"2026-04-09T08:11:56.329763","created_date":"2025-10-10T00:00:00"}
