{"id":"https://openalex.org/W2301638505","doi":"https://doi.org/10.1016/j.jbi.2016.03.007","title":"Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies","display_name":"Utilizing a structural meta-ontology for family-based quality assurance of the BioPortal ontologies","publication_year":2016,"publication_date":"2016-03-14","ids":{"openalex":"https://openalex.org/W2301638505","doi":"https://doi.org/10.1016/j.jbi.2016.03.007","mag":"2301638505","pmid":"https://pubmed.ncbi.nlm.nih.gov/26988001"},"language":"en","primary_location":{"id":"doi:10.1016/j.jbi.2016.03.007","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2016.03.007","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4893909","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049390460","display_name":"Christopher Ochs","orcid":null},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Christopher Ochs","raw_affiliation_strings":["Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA. Electronic address: cro3@njit.edu","Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA. Electronic address: cro3@njit.edu","institution_ids":["https://openalex.org/I118118575"]},{"raw_affiliation_string":"Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047567293","display_name":"Zhe He","orcid":"https://orcid.org/0000-0003-3608-0244"},"institutions":[{"id":"https://openalex.org/I103163165","display_name":"Florida State University","ror":"https://ror.org/05g3dte14","country_code":"US","type":"education","lineage":["https://openalex.org/I103163165"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhe He","raw_affiliation_strings":["School of Information, Florida State University, Tallahassee, FL 32306, USA"],"raw_orcid":"https://orcid.org/0000-0003-3608-0244","affiliations":[{"raw_affiliation_string":"School of Information, Florida State University, Tallahassee, FL 32306, USA","institution_ids":["https://openalex.org/I103163165"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100758590","display_name":"Ling Zheng","orcid":"https://orcid.org/0000-0003-0047-5826"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ling Zheng","raw_affiliation_strings":["Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5070654032","display_name":"James Geller","orcid":"https://orcid.org/0000-0002-9120-525X"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"James Geller","raw_affiliation_strings":["Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077648725","display_name":"Yehoshua Perl","orcid":"https://orcid.org/0000-0003-1940-9386"},"institutions":[{"id":"https://openalex.org/I118118575","display_name":"New Jersey Institute of Technology","ror":"https://ror.org/05e74xb87","country_code":"US","type":"education","lineage":["https://openalex.org/I118118575"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yehoshua Perl","raw_affiliation_strings":["Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science Department, New Jersey Institute of Technology, Newark, NJ 07102, USA","institution_ids":["https://openalex.org/I118118575"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053670656","display_name":"George Hripcsak","orcid":null},"institutions":[{"id":"https://openalex.org/I78577930","display_name":"Columbia University","ror":"https://ror.org/00hj8s172","country_code":"US","type":"education","lineage":["https://openalex.org/I78577930"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"George Hripcsak","raw_affiliation_strings":["Department of Biomedical Informatics, Columbia University, New York, NY 10027, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biomedical Informatics, Columbia University, New York, NY 10027, USA","institution_ids":["https://openalex.org/I78577930"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5009128820","display_name":"Mark A. Musen","orcid":"https://orcid.org/0000-0003-3325-793X"},"institutions":[{"id":"https://openalex.org/I97018004","display_name":"Stanford University","ror":"https://ror.org/00f54p054","country_code":"US","type":"education","lineage":["https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark A. Musen","raw_affiliation_strings":["Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, CA 94305, USA","institution_ids":["https://openalex.org/I97018004"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5049390460"],"corresponding_institution_ids":["https://openalex.org/I118118575"],"apc_list":{"value":2980,"currency":"USD","value_usd":2980},"apc_paid":null,"fwci":2.9636,"has_fulltext":false,"cited_by_count":21,"citation_normalized_percentile":{"value":0.90956467,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"61","issue":null,"first_page":"63","last_page":"76"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.9983000159263611,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12664","display_name":"Clinical practice guidelines implementation","score":0.951200008392334,"subfield":{"id":"https://openalex.org/subfields/2739","display_name":"Public Health, Environmental and Occupational Health"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.8884290456771851},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.794705331325531},{"id":"https://openalex.org/keywords/abstraction","display_name":"Abstraction","score":0.6744030117988586},{"id":"https://openalex.org/keywords/ontology-components","display_name":"Ontology components","score":0.6113491058349609},{"id":"https://openalex.org/keywords/process-ontology","display_name":"Process ontology","score":0.5773382782936096},{"id":"https://openalex.org/keywords/upper-ontology","display_name":"Upper ontology","score":0.5541043281555176},{"id":"https://openalex.org/keywords/ontology-based-data-integration","display_name":"Ontology-based data integration","score":0.5133664011955261},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.45587486028671265},{"id":"https://openalex.org/keywords/open-biomedical-ontologies","display_name":"Open Biomedical Ontologies","score":0.45082801580429077},{"id":"https://openalex.org/keywords/ontology-alignment","display_name":"Ontology alignment","score":0.3914445638656616},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33071476221084595},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.1998843550682068}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.8884290456771851},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.794705331325531},{"id":"https://openalex.org/C124304363","wikidata":"https://www.wikidata.org/wiki/Q673661","display_name":"Abstraction","level":2,"score":0.6744030117988586},{"id":"https://openalex.org/C154210476","wikidata":"https://www.wikidata.org/wiki/Q7095057","display_name":"Ontology components","level":5,"score":0.6113491058349609},{"id":"https://openalex.org/C137003198","wikidata":"https://www.wikidata.org/wiki/Q7247296","display_name":"Process ontology","level":3,"score":0.5773382782936096},{"id":"https://openalex.org/C78726541","wikidata":"https://www.wikidata.org/wiki/Q3882785","display_name":"Upper ontology","level":3,"score":0.5541043281555176},{"id":"https://openalex.org/C22550185","wikidata":"https://www.wikidata.org/wiki/Q7095047","display_name":"Ontology-based data integration","level":3,"score":0.5133664011955261},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.45587486028671265},{"id":"https://openalex.org/C137982476","wikidata":"https://www.wikidata.org/wiki/Q7072326","display_name":"Open Biomedical Ontologies","level":5,"score":0.45082801580429077},{"id":"https://openalex.org/C98893333","wikidata":"https://www.wikidata.org/wiki/Q4339878","display_name":"Ontology alignment","level":4,"score":0.3914445638656616},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33071476221084595},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.1998843550682068},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011786","descriptor_name":"Quality Control","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064229","descriptor_name":"Biological Ontologies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1016/j.jbi.2016.03.007","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.jbi.2016.03.007","pdf_url":null,"source":{"id":"https://openalex.org/S11622463","display_name":"Journal of Biomedical Informatics","issn_l":"1532-0464","issn":["1532-0464","1532-0480"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of Biomedical Informatics","raw_type":"journal-article"},{"id":"pmid:26988001","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/26988001","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Journal of biomedical informatics","raw_type":null},{"id":"pmh:oai:diginole.lib.fsu.edu:fsu_503243","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306401638","display_name":"DigiNole (Florida State University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I103163165","host_organization_name":"Florida State University","host_organization_lineage":["https://openalex.org/I103163165"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"text"},{"id":"pmh:oai:europepmc.org:4297131","is_oa":false,"landing_page_url":"http://europepmc.org/articles/PMC4893909","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:4893909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4893909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Inform","raw_type":"Text"}],"best_oa_location":{"id":"pmh:oai:pubmedcentral.nih.gov:4893909","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4893909","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"J Biomed Inform","raw_type":"Text"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","score":0.46000000834465027,"display_name":"Decent work and economic growth"}],"awards":[{"id":"https://openalex.org/G1160134096","display_name":null,"funder_award_id":"U54 HG004028","funder_id":"https://openalex.org/F4320337338","funder_display_name":"National Heart, Lung, and Blood Institute"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337338","display_name":"National Heart, Lung, and Blood Institute","ror":"https://ror.org/012pb6c26"},{"id":"https://openalex.org/F4320337348","display_name":"National Human Genome Research Institute","ror":"https://ror.org/00baak391"},{"id":"https://openalex.org/F4320337351","display_name":"National Cancer Institute","ror":"https://ror.org/040gcmg81"},{"id":"https://openalex.org/F4320338403","display_name":"Common Fund","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":89,"referenced_works":["https://openalex.org/W46109541","https://openalex.org/W89564465","https://openalex.org/W94569731","https://openalex.org/W128665181","https://openalex.org/W145466531","https://openalex.org/W181857603","https://openalex.org/W184690596","https://openalex.org/W192221291","https://openalex.org/W1456257443","https://openalex.org/W1483357098","https://openalex.org/W1501533447","https://openalex.org/W1501546233","https://openalex.org/W1527927437","https://openalex.org/W1551720558","https://openalex.org/W1564494788","https://openalex.org/W1566952502","https://openalex.org/W1623284047","https://openalex.org/W1801798365","https://openalex.org/W1845814381","https://openalex.org/W1866119307","https://openalex.org/W1964298951","https://openalex.org/W1964979998","https://openalex.org/W1965466476","https://openalex.org/W1973361504","https://openalex.org/W1975062706","https://openalex.org/W2008441672","https://openalex.org/W2008857142","https://openalex.org/W2010502047","https://openalex.org/W2026743036","https://openalex.org/W2030197114","https://openalex.org/W2033377040","https://openalex.org/W2041034659","https://openalex.org/W2078161054","https://openalex.org/W2087204000","https://openalex.org/W2091729411","https://openalex.org/W2103017472","https://openalex.org/W2104990432","https://openalex.org/W2105460297","https://openalex.org/W2106356140","https://openalex.org/W2106537457","https://openalex.org/W2108414747","https://openalex.org/W2110183893","https://openalex.org/W2110961693","https://openalex.org/W2113142309","https://openalex.org/W2118801479","https://openalex.org/W2123152121","https://openalex.org/W2124850752","https://openalex.org/W2125029697","https://openalex.org/W2128982045","https://openalex.org/W2130956106","https://openalex.org/W2133615210","https://openalex.org/W2134853963","https://openalex.org/W2135240301","https://openalex.org/W2137591261","https://openalex.org/W2139144616","https://openalex.org/W2140611297","https://openalex.org/W2143094087","https://openalex.org/W2144103767","https://openalex.org/W2159583324","https://openalex.org/W2168595932","https://openalex.org/W2170282111","https://openalex.org/W2179007934","https://openalex.org/W2187363965","https://openalex.org/W2188166121","https://openalex.org/W2260376738","https://openalex.org/W2289032462","https://openalex.org/W2293690484","https://openalex.org/W2399721281","https://openalex.org/W2400146846","https://openalex.org/W2402441198","https://openalex.org/W2417957957","https://openalex.org/W2798643531","https://openalex.org/W2985505473","https://openalex.org/W3204422530","https://openalex.org/W4210765383","https://openalex.org/W4243150586","https://openalex.org/W4250107567","https://openalex.org/W6629942558","https://openalex.org/W6630000427","https://openalex.org/W6638149974","https://openalex.org/W6658898802","https://openalex.org/W6675817494","https://openalex.org/W6676258132","https://openalex.org/W6676658304","https://openalex.org/W6677450151","https://openalex.org/W6679257330","https://openalex.org/W6679883134","https://openalex.org/W6685680447","https://openalex.org/W6712789265"],"related_works":["https://openalex.org/W4206428734","https://openalex.org/W2012420033","https://openalex.org/W334115264","https://openalex.org/W1794266373","https://openalex.org/W2102229151","https://openalex.org/W2138664789","https://openalex.org/W2365397974","https://openalex.org/W1992492046","https://openalex.org/W32047914","https://openalex.org/W3021743147"],"abstract_inverted_index":null,"counts_by_year":[{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":3}],"updated_date":"2026-03-10T14:07:55.174380","created_date":"2025-10-10T00:00:00"}
