{"id":"https://openalex.org/W3041484742","doi":"https://doi.org/10.1016/j.gpb.2020.06.001","title":"Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters","display_name":"Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters","publication_year":2020,"publication_date":"2020-07-12","ids":{"openalex":"https://openalex.org/W3041484742","doi":"https://doi.org/10.1016/j.gpb.2020.06.001","mag":"3041484742","pmid":"https://pubmed.ncbi.nlm.nih.gov/32663617"},"language":"en","primary_location":{"id":"doi:10.1016/j.gpb.2020.06.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.gpb.2020.06.001","pdf_url":"https://academic.oup.com/gpb/article-pdf/18/6/640/57580755/gpb_18_6_640.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics & Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://academic.oup.com/gpb/article-pdf/18/6/640/57580755/gpb_18_6_640.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100453224","display_name":"Qi Liu","orcid":"https://orcid.org/0000-0002-7892-5965"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Qi Liu","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-7892-5965","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010821321","display_name":"Shilei Zhao","orcid":"https://orcid.org/0000-0001-7262-1322"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shilei Zhao","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0001-7262-1322","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055063119","display_name":"Cheng\u2010Min Shi","orcid":"https://orcid.org/0000-0003-0237-4092"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Cheng-Min Shi","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China"],"raw_orcid":"https://orcid.org/0000-0003-0237-4092","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109488866","display_name":"Shuhui Song","orcid":"https://orcid.org/0000-0003-2409-8770"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Shuhui Song","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0003-2409-8770","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020902290","display_name":"Sihui Zhu","orcid":"https://orcid.org/0000-0002-1610-2234"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Sihui Zhu","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-1610-2234","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086314739","display_name":"Yankai Su","orcid":"https://orcid.org/0000-0002-0276-355X"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yankai Su","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-0276-355X","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090452340","display_name":"Wenming Zhao","orcid":"https://orcid.org/0000-0002-4396-8287"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Wenming Zhao","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-4396-8287","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101753481","display_name":"Mingkun Li","orcid":"https://orcid.org/0000-0003-1041-1172"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mingkun Li","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0003-1041-1172","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075882065","display_name":"Y\u012bm\u00edng B\u00e0o","orcid":"https://orcid.org/0000-0002-9922-9723"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yiming Bao","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-9922-9723","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035259297","display_name":"Yongbiao Xue","orcid":"https://orcid.org/0000-0002-6895-8472"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yongbiao Xue","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-6895-8472","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100380230","display_name":"Hua Chen","orcid":"https://orcid.org/0000-0002-9829-6561"},"institutions":[{"id":"https://openalex.org/I19820366","display_name":"Chinese Academy of Sciences","ror":"https://ror.org/034t30j35","country_code":"CN","type":"government","lineage":["https://openalex.org/I19820366"]},{"id":"https://openalex.org/I2801577699","display_name":"Beijing Institute of Genomics","ror":"https://ror.org/049gn7z52","country_code":"CN","type":"facility","lineage":["https://openalex.org/I19820366","https://openalex.org/I2801577699"]},{"id":"https://openalex.org/I4210162648","display_name":"Shanghai Center For Bioinformation Technology","ror":"https://ror.org/04nyf1f54","country_code":"CN","type":"facility","lineage":["https://openalex.org/I4210162648"]},{"id":"https://openalex.org/I4210165038","display_name":"University of Chinese Academy of Sciences","ror":"https://ror.org/05qbk4x57","country_code":"CN","type":"education","lineage":["https://openalex.org/I19820366","https://openalex.org/I4210165038"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Hua Chen","raw_affiliation_strings":["Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","China National Center for Bioinformation , Beijing 100101 , China","University of Chinese Academy of Sciences , Beijing 100049 , China"],"raw_orcid":"https://orcid.org/0000-0002-9829-6561","affiliations":[{"raw_affiliation_string":"Beijing Institute of Genomics, Chinese Academy of Sciences , Beijing 100101 , China","institution_ids":["https://openalex.org/I2801577699","https://openalex.org/I19820366"]},{"raw_affiliation_string":"Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences , Kunming 650223 , China","institution_ids":["https://openalex.org/I19820366"]},{"raw_affiliation_string":"China National Center for Bioinformation , Beijing 100101 , China","institution_ids":["https://openalex.org/I4210162648"]},{"raw_affiliation_string":"University of Chinese Academy of Sciences , Beijing 100049 , China","institution_ids":["https://openalex.org/I4210165038"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":11,"corresponding_author_ids":["https://openalex.org/A5100453224"],"corresponding_institution_ids":["https://openalex.org/I19820366","https://openalex.org/I2801577699","https://openalex.org/I4210162648","https://openalex.org/I4210165038"],"apc_list":{"value":3500,"currency":"USD","value_usd":3500},"apc_paid":{"value":3500,"currency":"USD","value_usd":3500},"fwci":1.2612,"has_fulltext":true,"cited_by_count":51,"citation_normalized_percentile":{"value":0.88842953,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":100},"biblio":{"volume":"18","issue":"6","first_page":"640","last_page":"647"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10118","display_name":"SARS-CoV-2 and COVID-19 Research","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T11495","display_name":"Animal Virus Infections Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1103","display_name":"Animal Science and Zoology"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10976","display_name":"Viral gastroenteritis research and epidemiology","score":0.9975000023841858,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/most-recent-common-ancestor","display_name":"Most recent common ancestor","score":0.6818053722381592},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6211866140365601},{"id":"https://openalex.org/keywords/mutation-rate","display_name":"Mutation rate","score":0.5757573843002319},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.5557394623756409},{"id":"https://openalex.org/keywords/haplotype","display_name":"Haplotype","score":0.5069661140441895},{"id":"https://openalex.org/keywords/population-genetics","display_name":"Population genetics","score":0.4573895037174225},{"id":"https://openalex.org/keywords/severe-acute-respiratory-syndrome-coronavirus-2","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","score":0.4368381202220917},{"id":"https://openalex.org/keywords/genetic-drift","display_name":"Genetic drift","score":0.4311820864677429},{"id":"https://openalex.org/keywords/effective-population-size","display_name":"Effective population size","score":0.4266815185546875},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.42208003997802734},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.41898128390312195},{"id":"https://openalex.org/keywords/genetic-variation","display_name":"Genetic variation","score":0.40583181381225586},{"id":"https://openalex.org/keywords/coronavirus-disease-2019","display_name":"Coronavirus disease 2019 (COVID-19)","score":0.3693397641181946},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.32465803623199463},{"id":"https://openalex.org/keywords/allele","display_name":"Allele","score":0.2959006726741791},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.22101768851280212},{"id":"https://openalex.org/keywords/infectious-disease","display_name":"Infectious disease (medical specialty)","score":0.18108025193214417},{"id":"https://openalex.org/keywords/demography","display_name":"Demography","score":0.1493004858493805},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.12933257222175598},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.11890822649002075}],"concepts":[{"id":"https://openalex.org/C197583594","wikidata":"https://www.wikidata.org/wiki/Q1052390","display_name":"Most recent common ancestor","level":4,"score":0.6818053722381592},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6211866140365601},{"id":"https://openalex.org/C98638677","wikidata":"https://www.wikidata.org/wiki/Q2067051","display_name":"Mutation rate","level":3,"score":0.5757573843002319},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.5557394623756409},{"id":"https://openalex.org/C197754878","wikidata":"https://www.wikidata.org/wiki/Q80711","display_name":"Haplotype","level":4,"score":0.5069661140441895},{"id":"https://openalex.org/C85721925","wikidata":"https://www.wikidata.org/wiki/Q31151","display_name":"Population genetics","level":3,"score":0.4573895037174225},{"id":"https://openalex.org/C3007834351","wikidata":"https://www.wikidata.org/wiki/Q82069695","display_name":"Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2)","level":5,"score":0.4368381202220917},{"id":"https://openalex.org/C80990810","wikidata":"https://www.wikidata.org/wiki/Q486420","display_name":"Genetic drift","level":4,"score":0.4311820864677429},{"id":"https://openalex.org/C3641667","wikidata":"https://www.wikidata.org/wiki/Q1295959","display_name":"Effective population size","level":4,"score":0.4266815185546875},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.42208003997802734},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.41898128390312195},{"id":"https://openalex.org/C68873052","wikidata":"https://www.wikidata.org/wiki/Q349856","display_name":"Genetic variation","level":3,"score":0.40583181381225586},{"id":"https://openalex.org/C3008058167","wikidata":"https://www.wikidata.org/wiki/Q84263196","display_name":"Coronavirus disease 2019 (COVID-19)","level":4,"score":0.3693397641181946},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.32465803623199463},{"id":"https://openalex.org/C180754005","wikidata":"https://www.wikidata.org/wiki/Q80726","display_name":"Allele","level":3,"score":0.2959006726741791},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.22101768851280212},{"id":"https://openalex.org/C524204448","wikidata":"https://www.wikidata.org/wiki/Q788926","display_name":"Infectious disease (medical specialty)","level":3,"score":0.18108025193214417},{"id":"https://openalex.org/C149923435","wikidata":"https://www.wikidata.org/wiki/Q37732","display_name":"Demography","level":1,"score":0.1493004858493805},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.12933257222175598},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.11890822649002075},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C144024400","wikidata":"https://www.wikidata.org/wiki/Q21201","display_name":"Sociology","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086382","descriptor_name":"COVID-19","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000086402","descriptor_name":"SARS-CoV-2","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006239","descriptor_name":"Haplotypes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015983","descriptor_name":"Selection Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015983","descriptor_name":"Selection Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015983","descriptor_name":"Selection Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015983","descriptor_name":"Selection Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1016/j.gpb.2020.06.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.gpb.2020.06.001","pdf_url":"https://academic.oup.com/gpb/article-pdf/18/6/640/57580755/gpb_18_6_640.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics & Bioinformatics","raw_type":"journal-article"},{"id":"pmid:32663617","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/32663617","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, proteomics & bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:7354277","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/7354277","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Genomics Proteomics Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1016/j.gpb.2020.06.001","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.gpb.2020.06.001","pdf_url":"https://academic.oup.com/gpb/article-pdf/18/6/640/57580755/gpb_18_6_640.pdf","source":{"id":"https://openalex.org/S155547894","display_name":"Genomics Proteomics & Bioinformatics","issn_l":"1672-0229","issn":["1672-0229","2210-3244"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Genomics, Proteomics & Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.6399999856948853}],"awards":[{"id":"https://openalex.org/G1545280843","display_name":null,"funder_award_id":"2020YFC0847000","funder_id":"https://openalex.org/F4320335777","funder_display_name":"National Key Research and Development Program of China"},{"id":"https://openalex.org/G3130136699","display_name":null,"funder_award_id":"91731302","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4836673222","display_name":null,"funder_award_id":"31571370","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5734109085","display_name":null,"funder_award_id":"31772435","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321540","display_name":"Ministry of Science and Technology of the People's Republic of China","ror":"https://ror.org/027s68j25"},{"id":"https://openalex.org/F4320335777","display_name":"National Key Research and Development Program of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W3041484742.pdf","grobid_xml":"https://content.openalex.org/works/W3041484742.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W1975375203","https://openalex.org/W1990074132","https://openalex.org/W1997232300","https://openalex.org/W2020939898","https://openalex.org/W2033182966","https://openalex.org/W2083475779","https://openalex.org/W2096420865","https://openalex.org/W2100444509","https://openalex.org/W2115837217","https://openalex.org/W2121009566","https://openalex.org/W2123707618","https://openalex.org/W2132926880","https://openalex.org/W2134213231","https://openalex.org/W2164334111","https://openalex.org/W2167227766","https://openalex.org/W2298939963","https://openalex.org/W2799524357","https://openalex.org/W2807308836","https://openalex.org/W3001118548","https://openalex.org/W3003217347","https://openalex.org/W3004280078","https://openalex.org/W3010020071","https://openalex.org/W3010373510","https://openalex.org/W3023943624","https://openalex.org/W3024607230","https://openalex.org/W3034523319","https://openalex.org/W6697800059","https://openalex.org/W6774101627"],"related_works":["https://openalex.org/W1987442806","https://openalex.org/W3189586940","https://openalex.org/W3154905257","https://openalex.org/W4293320311","https://openalex.org/W2573928980","https://openalex.org/W3189845399","https://openalex.org/W2004990674","https://openalex.org/W1989971198","https://openalex.org/W2741913672","https://openalex.org/W2460587805"],"abstract_inverted_index":{"Abstract":[0],"A":[1],"novel":[2],"RNA":[3],"virus,":[4],"the":[5,16,32,51,77,80,87,93,130,133,175,181,216,228],"severe":[6],"acute":[7],"respiratory":[8],"syndrome":[9],"coronavirus":[10,20],"2":[11],"(SARS-CoV-2),":[12],"is":[13,105],"responsible":[14],"for":[15,30,76,234],"ongoing":[17],"outbreak":[18],"of":[19,37,47,56,100,122,132,145,163,177,218,231],"disease":[21],"2019":[22,140],"(COVID-19).":[23],"Population":[24],"genetic":[25,171,207],"analysis":[26],"could":[27],"be":[28,108,137,211,238],"useful":[29],"investigating":[31],"origin":[33],"and":[34,45,65,86,90,129,161,180,221],"evolutionary":[35,196,229],"dynamics":[36],"COVID-19.":[38],"However,":[39],"due":[40],"to":[41,61,79,95,107,136,192,210,213,224],"extensive":[42],"sampling":[43,219],"bias":[44,220],"existence":[46],"infection":[48,188,222],"clusters":[49,223],"during":[50],"epidemic":[52],"spread,":[53],"direct":[54],"applications":[55],"existing":[57],"approaches":[58],"can":[59,237],"lead":[60],"biased":[62],"parameter":[63],"estimations":[64],"data":[66],"misinterpretation.":[67],"In":[68],"this":[69],"study,":[70],"we":[71],"first":[72],"present":[73],"robust":[74],"estimator":[75],"time":[78],"most":[81],"recent":[82],"common":[83],"ancestor":[84],"(TMRCA)":[85],"mutation":[88,103],"rate,":[89],"then":[91],"apply":[92],"approach":[94],"analyze":[96],"12,909":[97],"genomic":[98],"sequences":[99],"SARS-CoV-2.":[101,232],"The":[102,152],"rate":[104],"inferred":[106,135],"8.69":[109],"\u00d7":[110,124,127],"10\u22124":[111],"per":[112,114],"site":[113],"year":[115],"with":[116,141],"a":[117,142],"95%":[118,143],"confidence":[119],"interval":[120],"(CI)":[121],"[8.61":[123],"10\u22124,":[125],"8.77":[126],"10\u22124],":[128],"TMRCA":[131],"samples":[134],"Nov":[138],"28,":[139],"CI":[144],"[Oct":[146],"20,":[147],"2019,":[148],"Dec":[149],"9,":[150],"2019].":[151],"results":[153,203],"indicate":[154],"that":[155,170,205],"COVID-19":[156],"might":[157],"originate":[158],"earlier":[159],"than":[160],"outside":[162],"Wuhan":[164],"Seafood":[165],"Market.":[166],"We":[167],"further":[168],"demonstrate":[169],"polymorphism":[172],"patterns,":[173],"including":[174],"enrichment":[176],"specific":[178],"haplotypes":[179],"temporal":[182],"allele":[183],"frequency":[184],"trajectories":[185],"generated":[186],"from":[187],"clusters,":[189],"are":[190],"similar":[191],"those":[193],"caused":[194],"by":[195],"forces":[197],"such":[198],"as":[199],"natural":[200],"selection.":[201],"Our":[202],"show":[204],"population":[206],"methods":[208],"need":[209],"developed":[212],"efficiently":[214],"detangle":[215],"effects":[217],"gain":[225],"insights":[226],"into":[227],"mechanism":[230],"Software":[233],"implementing":[235],"VirusMuT":[236],"downloaded":[239],"at":[240],"https://bigd.big.ac.cn/biocode/tools/BT007081.":[241]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2023,"cited_by_count":9},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":5}],"updated_date":"2026-05-16T08:24:45.110214","created_date":"2025-10-10T00:00:00"}