{"id":"https://openalex.org/W7163574830","doi":"https://doi.org/10.1016/j.eswa.2026.133163","title":"PDGAGRN: Graph diffusion pretraining and dynamic graph learning for gene regulatory network inference from single-cell RNA-sequencing data","display_name":"PDGAGRN: Graph diffusion pretraining and dynamic graph learning for gene regulatory network inference from single-cell RNA-sequencing data","publication_year":2026,"publication_date":"2026-06-04","ids":{"openalex":"https://openalex.org/W7163574830","doi":"https://doi.org/10.1016/j.eswa.2026.133163"},"language":"en","primary_location":{"id":"doi:10.1016/j.eswa.2026.133163","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2026.133163","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5137878982","display_name":"Dengju Yao","orcid":"https://orcid.org/0000-0002-4974-3054"},"institutions":[{"id":"https://openalex.org/I100188998","display_name":"Harbin University of Science and Technology","ror":"https://ror.org/04e6y1282","country_code":"CN","type":"education","lineage":["https://openalex.org/I100188998"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dengju Yao","raw_affiliation_strings":["School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China"],"raw_orcid":"https://orcid.org/0000-0002-4974-3054","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China","institution_ids":["https://openalex.org/I100188998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137873104","display_name":"Dengke Yuan","orcid":"https://orcid.org/0009-0001-2220-9759"},"institutions":[{"id":"https://openalex.org/I100188998","display_name":"Harbin University of Science and Technology","ror":"https://ror.org/04e6y1282","country_code":"CN","type":"education","lineage":["https://openalex.org/I100188998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Dengke Yuan","raw_affiliation_strings":["School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China"],"raw_orcid":"https://orcid.org/0009-0001-2220-9759","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China","institution_ids":["https://openalex.org/I100188998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101326737","display_name":"Yali Shao","orcid":null},"institutions":[{"id":"https://openalex.org/I100188998","display_name":"Harbin University of Science and Technology","ror":"https://ror.org/04e6y1282","country_code":"CN","type":"education","lineage":["https://openalex.org/I100188998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yali Shao","raw_affiliation_strings":["School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China"],"raw_orcid":"https://orcid.org/0009-0008-2563-388X","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China","institution_ids":["https://openalex.org/I100188998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137838807","display_name":"Xiaojuan Zhan","orcid":"https://orcid.org/0000-0001-5327-1427"},"institutions":[{"id":"https://openalex.org/I4210161462","display_name":"Heilongjiang Institute of Technology","ror":"https://ror.org/05x0m9n95","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210161462"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xiaojuan Zhan","raw_affiliation_strings":["College of Computer Science and Technology, Heilongjiang Institute of Technology, Harbin, 150050, China"],"raw_orcid":"https://orcid.org/0000-0001-5327-1427","affiliations":[{"raw_affiliation_string":"College of Computer Science and Technology, Heilongjiang Institute of Technology, Harbin, 150050, China","institution_ids":["https://openalex.org/I4210161462"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137836042","display_name":"Guangyi Tang","orcid":"https://orcid.org/0009-0005-5011-1977"},"institutions":[{"id":"https://openalex.org/I100188998","display_name":"Harbin University of Science and Technology","ror":"https://ror.org/04e6y1282","country_code":"CN","type":"education","lineage":["https://openalex.org/I100188998"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Guangyi Tang","raw_affiliation_strings":["School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China"],"raw_orcid":"https://orcid.org/0009-0005-5011-1977","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology, Harbin University of Science and Technology, Harbin, 150080, China","institution_ids":["https://openalex.org/I100188998"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5137832261","display_name":"Yu Zhang (12946)","orcid":"https://orcid.org/0009-0004-6404-4958"},"institutions":[{"id":"https://openalex.org/I44445938","display_name":"Shandong Jianzhu University","ror":"https://ror.org/01gbfax37","country_code":"CN","type":"education","lineage":["https://openalex.org/I44445938"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yu Zhang","raw_affiliation_strings":["School of Software and the Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan, 250101, China"],"raw_orcid":"https://orcid.org/0009-0004-6404-4958","affiliations":[{"raw_affiliation_string":"School of Software and the Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan, 250101, China","institution_ids":["https://openalex.org/I44445938"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5124159661","display_name":"Yuehu Wu","orcid":null},"institutions":[{"id":"https://openalex.org/I25757504","display_name":"China University of Mining and Technology","ror":"https://ror.org/01xt2dr21","country_code":"CN","type":"education","lineage":["https://openalex.org/I25757504"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yuehu Wu","raw_affiliation_strings":["School of Computer Science and Technology/School of Artificial Intelligence, China University of Mining and Technology, Xuzhou, 221116, China"],"raw_orcid":"https://orcid.org/0009-0009-3177-8564","affiliations":[{"raw_affiliation_string":"School of Computer Science and Technology/School of Artificial Intelligence, China University of Mining and Technology, Xuzhou, 221116, China","institution_ids":["https://openalex.org/I25757504"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5137878982"],"corresponding_institution_ids":["https://openalex.org/I100188998"],"apc_list":{"value":3220,"currency":"USD","value_usd":3220},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.79332461,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"331","issue":null,"first_page":"133163","last_page":"133163"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9287999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9287999868392944,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.030899999663233757,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.013000000268220901,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.6886000037193298},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.6446999907493591},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.541100025177002},{"id":"https://openalex.org/keywords/regulator-gene","display_name":"Regulator gene","score":0.3416999876499176},{"id":"https://openalex.org/keywords/graph-theory","display_name":"Graph theory","score":0.33550000190734863}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7346000075340271},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.6886000037193298},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.6446999907493591},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5577999949455261},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.541100025177002},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4153999984264374},{"id":"https://openalex.org/C33498276","wikidata":"https://www.wikidata.org/wiki/Q2138797","display_name":"Regulator gene","level":4,"score":0.3416999876499176},{"id":"https://openalex.org/C88230418","wikidata":"https://www.wikidata.org/wiki/Q131476","display_name":"Graph theory","level":2,"score":0.33550000190734863},{"id":"https://openalex.org/C13540734","wikidata":"https://www.wikidata.org/wiki/Q5318996","display_name":"Dynamic network analysis","level":2,"score":0.3149999976158142},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2948000133037567},{"id":"https://openalex.org/C197298091","wikidata":"https://www.wikidata.org/wiki/Q5318963","display_name":"Dynamic data","level":2,"score":0.27810001373291016},{"id":"https://openalex.org/C146380142","wikidata":"https://www.wikidata.org/wiki/Q1137726","display_name":"Directed graph","level":2,"score":0.2687000036239624},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2535000145435333}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.eswa.2026.133163","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2026.133163","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320323085","display_name":"Natural Science Foundation of Heilongjiang Province","ror":null}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":39,"referenced_works":["https://openalex.org/W2017102965","https://openalex.org/W2076513103","https://openalex.org/W2111384508","https://openalex.org/W2126345910","https://openalex.org/W2126750365","https://openalex.org/W2175370850","https://openalex.org/W2561884319","https://openalex.org/W2757234574","https://openalex.org/W2782454362","https://openalex.org/W2900310474","https://openalex.org/W2900569176","https://openalex.org/W2901292166","https://openalex.org/W2921554869","https://openalex.org/W2951424836","https://openalex.org/W2952794339","https://openalex.org/W2964315448","https://openalex.org/W2997831639","https://openalex.org/W3045910546","https://openalex.org/W3080500495","https://openalex.org/W3127245931","https://openalex.org/W3186348651","https://openalex.org/W4290930137","https://openalex.org/W4296024012","https://openalex.org/W4313340543","https://openalex.org/W4382022265","https://openalex.org/W4386699707","https://openalex.org/W4388870182","https://openalex.org/W4394014672","https://openalex.org/W4394764901","https://openalex.org/W4397031715","https://openalex.org/W4399801297","https://openalex.org/W4403516090","https://openalex.org/W4404479890","https://openalex.org/W4407638313","https://openalex.org/W4408653383","https://openalex.org/W4410910679","https://openalex.org/W4412505250","https://openalex.org/W4414221956","https://openalex.org/W4414410430"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2026-06-05T00:00:00"}
