{"id":"https://openalex.org/W7132846037","doi":"https://doi.org/10.1016/j.eswa.2026.131725","title":"OpenBioNER-v2: A suite of lightweight models for zero-shot medical named entity recognition via type descriptions","display_name":"OpenBioNER-v2: A suite of lightweight models for zero-shot medical named entity recognition via type descriptions","publication_year":2026,"publication_date":"2026-02-28","ids":{"openalex":"https://openalex.org/W7132846037","doi":"https://doi.org/10.1016/j.eswa.2026.131725"},"language":"en","primary_location":{"id":"doi:10.1016/j.eswa.2026.131725","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2026.131725","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111141237","display_name":"Alessio Cocchieri","orcid":"https://orcid.org/0009-0003-1507-1354"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alessio Cocchieri","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy"],"raw_orcid":"https://orcid.org/0009-0003-1507-1354","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030361899","display_name":"Giacomo Frisoni","orcid":"https://orcid.org/0000-0002-9845-0231"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Giacomo Frisoni","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy"],"raw_orcid":"https://orcid.org/0000-0002-9845-0231","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5120095981","display_name":"Francesco Zangrillo","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Francesco Zangrillo","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","Departments of Arts, University of Bologna, Via Barberia 4, Bologna, I-40123, Italy"],"raw_orcid":"https://orcid.org/0009-0004-2987-6206","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]},{"raw_affiliation_string":"Departments of Arts, University of Bologna, Via Barberia 4, Bologna, I-40123, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5046178204","display_name":"Luca Ragazzi","orcid":"https://orcid.org/0000-0003-3574-9962"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Luca Ragazzi","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy"],"raw_orcid":"https://orcid.org/0000-0003-3574-9962","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092550352","display_name":"Marcos Mart\u00ednez Galindo","orcid":null},"institutions":[{"id":"https://openalex.org/I4210145784","display_name":"IBM Research - Ireland","ror":"https://ror.org/04jnxr720","country_code":"IE","type":"facility","lineage":["https://openalex.org/I1341412227","https://openalex.org/I4210114115","https://openalex.org/I4210145784"]}],"countries":["IE"],"is_corresponding":false,"raw_author_name":"Marcos Mart\u00ednez Galindo","raw_affiliation_strings":["IBM Research Europe, Dublin, Ireland"],"raw_orcid":"https://orcid.org/0000-0001-8646-7354","affiliations":[{"raw_affiliation_string":"IBM Research Europe, Dublin, Ireland","institution_ids":["https://openalex.org/I4210145784"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004842257","display_name":"Giuseppe Tagliavini","orcid":"https://orcid.org/0000-0002-9221-4633"},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giuseppe Tagliavini","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy"],"raw_orcid":"https://orcid.org/0000-0002-9221-4633","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5123034114","display_name":"Gianluca Moro","orcid":null},"institutions":[{"id":"https://openalex.org/I9360294","display_name":"University of Bologna","ror":"https://ror.org/01111rn36","country_code":"IT","type":"education","lineage":["https://openalex.org/I9360294"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Gianluca Moro","raw_affiliation_strings":["Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy"],"raw_orcid":"https://orcid.org/0000-0002-3663-7877","affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, University of Bologna, Via dell\u2019Universit\u00e0 50, Cesena, I-47522, Italy","institution_ids":["https://openalex.org/I9360294"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5030361899","https://openalex.org/A5111141237","https://openalex.org/A5123034114"],"corresponding_institution_ids":["https://openalex.org/I9360294"],"apc_list":{"value":3220,"currency":"USD","value_usd":3220},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.39871256,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"318","issue":null,"first_page":"131725","last_page":"131725"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.7896000146865845,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.7896000146865845,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.05350000038743019,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12380","display_name":"Authorship Attribution and Profiling","score":0.03929999843239784,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/named-entity-recognition","display_name":"Named-entity recognition","score":0.7028999924659729},{"id":"https://openalex.org/keywords/leverage","display_name":"Leverage (statistics)","score":0.61080002784729},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.6107000112533569},{"id":"https://openalex.org/keywords/entity-linking","display_name":"Entity linking","score":0.609499990940094},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5515000224113464},{"id":"https://openalex.org/keywords/suite","display_name":"Suite","score":0.5472000241279602},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.525600016117096},{"id":"https://openalex.org/keywords/transformer","display_name":"Transformer","score":0.435699999332428},{"id":"https://openalex.org/keywords/named-entity","display_name":"Named entity","score":0.4223000109195709}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8747000098228455},{"id":"https://openalex.org/C2779135771","wikidata":"https://www.wikidata.org/wiki/Q403574","display_name":"Named-entity recognition","level":3,"score":0.7028999924659729},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6169000267982483},{"id":"https://openalex.org/C204321447","wikidata":"https://www.wikidata.org/wiki/Q30642","display_name":"Natural language processing","level":1,"score":0.6132000088691711},{"id":"https://openalex.org/C153083717","wikidata":"https://www.wikidata.org/wiki/Q6535263","display_name":"Leverage (statistics)","level":2,"score":0.61080002784729},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.6107000112533569},{"id":"https://openalex.org/C96711827","wikidata":"https://www.wikidata.org/wiki/Q17012245","display_name":"Entity linking","level":3,"score":0.609499990940094},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5515000224113464},{"id":"https://openalex.org/C79581498","wikidata":"https://www.wikidata.org/wiki/Q1367530","display_name":"Suite","level":2,"score":0.5472000241279602},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.525600016117096},{"id":"https://openalex.org/C66322947","wikidata":"https://www.wikidata.org/wiki/Q11658","display_name":"Transformer","level":3,"score":0.435699999332428},{"id":"https://openalex.org/C2777889803","wikidata":"https://www.wikidata.org/wiki/Q25047676","display_name":"Named entity","level":2,"score":0.4223000109195709},{"id":"https://openalex.org/C2779439875","wikidata":"https://www.wikidata.org/wiki/Q1078276","display_name":"Natural language understanding","level":3,"score":0.4140999913215637},{"id":"https://openalex.org/C195324797","wikidata":"https://www.wikidata.org/wiki/Q33742","display_name":"Natural language","level":2,"score":0.4138999879360199},{"id":"https://openalex.org/C137293760","wikidata":"https://www.wikidata.org/wiki/Q3621696","display_name":"Language model","level":2,"score":0.4108999967575073},{"id":"https://openalex.org/C123657996","wikidata":"https://www.wikidata.org/wiki/Q12271","display_name":"Architecture","level":2,"score":0.37290000915527344},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.37040001153945923},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3619000017642975},{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.3540000021457672},{"id":"https://openalex.org/C4554734","wikidata":"https://www.wikidata.org/wiki/Q593744","display_name":"Knowledge base","level":2,"score":0.3488999903202057},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3253999948501587},{"id":"https://openalex.org/C177148314","wikidata":"https://www.wikidata.org/wiki/Q170084","display_name":"Generalization","level":2,"score":0.29030001163482666},{"id":"https://openalex.org/C118505674","wikidata":"https://www.wikidata.org/wiki/Q42586063","display_name":"Encoder","level":2,"score":0.2775000035762787},{"id":"https://openalex.org/C171686336","wikidata":"https://www.wikidata.org/wiki/Q3532085","display_name":"Topic model","level":2,"score":0.2667999863624573},{"id":"https://openalex.org/C69505689","wikidata":"https://www.wikidata.org/wiki/Q455338","display_name":"Unified Medical Language System","level":2,"score":0.2637999951839447},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.26100000739097595},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.2599000036716461}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.eswa.2026.131725","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.eswa.2026.131725","pdf_url":null,"source":{"id":"https://openalex.org/S13144211","display_name":"Expert Systems with Applications","issn_l":"0957-4174","issn":["0957-4174","1873-6793"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Expert Systems with Applications","raw_type":"journal-article"},{"id":"pmh:oai:cris.unibo.it:11585/1061020","is_oa":false,"landing_page_url":"https://hdl.handle.net/11585/1061020","pdf_url":null,"source":{"id":"https://openalex.org/S4306402579","display_name":"Archivio istituzionale della ricerca (Alma Mater Studiorum Universit\u00e0 di Bologna)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210117483","host_organization_name":"Istituto di Ematologia di Bologna","host_organization_lineage":["https://openalex.org/I4210117483"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320309743","display_name":"Fondazione Cassa di Risparmio in Bologna","ror":"https://ror.org/0404v4f94"},{"id":"https://openalex.org/F4320324632","display_name":"Ministero dello Sviluppo Economico","ror":"https://ror.org/011z3ff80"},{"id":"https://openalex.org/F5497039910","display_name":"Ministero dell'Istruzione e del Merito","ror":"https://ror.org/01ehyh486"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":24,"referenced_works":["https://openalex.org/W1995228216","https://openalex.org/W2066203299","https://openalex.org/W2120754707","https://openalex.org/W2146089916","https://openalex.org/W2169099542","https://openalex.org/W2190333735","https://openalex.org/W2223216628","https://openalex.org/W2562531153","https://openalex.org/W2582146834","https://openalex.org/W2734608416","https://openalex.org/W2910453440","https://openalex.org/W2911489562","https://openalex.org/W2949176808","https://openalex.org/W2963339489","https://openalex.org/W2963499153","https://openalex.org/W3004506153","https://openalex.org/W3010607409","https://openalex.org/W3216626696","https://openalex.org/W4283318325","https://openalex.org/W4376274483","https://openalex.org/W4393094733","https://openalex.org/W4401387006","https://openalex.org/W4407046395","https://openalex.org/W4412466502"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-04-30T09:15:22.047038","created_date":"2026-03-01T00:00:00"}
