{"id":"https://openalex.org/W4391718910","doi":"https://doi.org/10.1016/j.envsoft.2024.105973","title":"pyMANGA: A modular, open and extendable software platform for modeling of forest and vegetation dynamics","display_name":"pyMANGA: A modular, open and extendable software platform for modeling of forest and vegetation dynamics","publication_year":2024,"publication_date":"2024-02-10","ids":{"openalex":"https://openalex.org/W4391718910","doi":"https://doi.org/10.1016/j.envsoft.2024.105973"},"language":"en","primary_location":{"id":"doi:10.1016/j.envsoft.2024.105973","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2024.105973","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1364815224000343","source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://www.sciencedirect.com/science/article/pii/S1364815224000343","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005594306","display_name":"Marie\u2010Christin Wimmler","orcid":"https://orcid.org/0000-0002-4542-6764"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Marie-Christin Wimmler","raw_affiliation_strings":["Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016936463","display_name":"Jasper Bathmann","orcid":"https://orcid.org/0000-0002-8561-3126"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jasper Bathmann","raw_affiliation_strings":["Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5093121567","display_name":"Jonas Vollh\u00fcter","orcid":"https://orcid.org/0009-0004-7246-7774"},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jonas Vollh\u00fcter","raw_affiliation_strings":["Institute of Biology, Freie Universit\u00e4t Berlin, 14195, Berlin, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Biology, Freie Universit\u00e4t Berlin, 14195, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5077453382","display_name":"Uta Berger","orcid":"https://orcid.org/0000-0001-6920-136X"},"institutions":[{"id":"https://openalex.org/I78650965","display_name":"TU Dresden","ror":"https://ror.org/042aqky30","country_code":"DE","type":"education","lineage":["https://openalex.org/I78650965"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Uta Berger","raw_affiliation_strings":["Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany"],"affiliations":[{"raw_affiliation_string":"Institute of Forest Growth and Forest Computer Sciences, TUD Dresden University of Technology, 01062, Dresden, Germany","institution_ids":["https://openalex.org/I78650965"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5005594306"],"corresponding_institution_ids":["https://openalex.org/I78650965"],"apc_list":{"value":3400,"currency":"USD","value_usd":3400},"apc_paid":{"value":3400,"currency":"USD","value_usd":3400},"fwci":8.4368,"has_fulltext":true,"cited_by_count":12,"citation_normalized_percentile":{"value":0.97865902,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":98,"max":99},"biblio":{"volume":"174","issue":null,"first_page":"105973","last_page":"105973"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10266","display_name":"Plant Water Relations and Carbon Dynamics","score":0.9923999905586243,"subfield":{"id":"https://openalex.org/subfields/2306","display_name":"Global and Planetary Change"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.9864000082015991,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/modular-design","display_name":"Modular design","score":0.7182662487030029},{"id":"https://openalex.org/keywords/vegetation","display_name":"Vegetation (pathology)","score":0.6442292928695679},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6251279711723328},{"id":"https://openalex.org/keywords/benchmarking","display_name":"Benchmarking","score":0.5543922185897827},{"id":"https://openalex.org/keywords/interchangeability","display_name":"Interchangeability","score":0.4992046356201172},{"id":"https://openalex.org/keywords/resource","display_name":"Resource (disambiguation)","score":0.4834362268447876},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.4261508584022522},{"id":"https://openalex.org/keywords/ecology","display_name":"Ecology","score":0.39483246207237244},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09587156772613525}],"concepts":[{"id":"https://openalex.org/C101468663","wikidata":"https://www.wikidata.org/wiki/Q1620158","display_name":"Modular design","level":2,"score":0.7182662487030029},{"id":"https://openalex.org/C2776133958","wikidata":"https://www.wikidata.org/wiki/Q7918366","display_name":"Vegetation (pathology)","level":2,"score":0.6442292928695679},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6251279711723328},{"id":"https://openalex.org/C86251818","wikidata":"https://www.wikidata.org/wiki/Q816754","display_name":"Benchmarking","level":2,"score":0.5543922185897827},{"id":"https://openalex.org/C2779606619","wikidata":"https://www.wikidata.org/wiki/Q17092524","display_name":"Interchangeability","level":2,"score":0.4992046356201172},{"id":"https://openalex.org/C206345919","wikidata":"https://www.wikidata.org/wiki/Q20380951","display_name":"Resource (disambiguation)","level":2,"score":0.4834362268447876},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.4261508584022522},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.39483246207237244},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09587156772613525},{"id":"https://openalex.org/C31258907","wikidata":"https://www.wikidata.org/wiki/Q1301371","display_name":"Computer network","level":1,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C162853370","wikidata":"https://www.wikidata.org/wiki/Q39809","display_name":"Marketing","level":1,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C144133560","wikidata":"https://www.wikidata.org/wiki/Q4830453","display_name":"Business","level":0,"score":0.0}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1016/j.envsoft.2024.105973","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2024.105973","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1364815224000343","source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"},{"id":"pmh:oai:refubium.fu-berlin.de:fub188/43541","is_oa":true,"landing_page_url":"https://refubium.fu-berlin.de/handle/fub188/43541","pdf_url":"https://refubium.fu-berlin.de/bitstream/fub188/43541/1/1-s2.0-S1364815224000343-main.pdf","source":{"id":"https://openalex.org/S4306402444","display_name":"Refubium (Universit\u00e4tsbibliothek der Freien Universit\u00e4t Berlin)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I75951250","host_organization_name":"Freie Universit\u00e4t Berlin","host_organization_lineage":["https://openalex.org/I75951250"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"doc-type:article"},{"id":"doi:10.17169/refubium-43257","is_oa":true,"landing_page_url":"https://doi.org/10.17169/refubium-43257","pdf_url":null,"source":{"id":"https://openalex.org/S7407052913","display_name":"Universit\u00e4tsbibliothek der FU Berlin Hochschulschriftenstelle u. Dokumentenserver","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1016/j.envsoft.2024.105973","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.envsoft.2024.105973","pdf_url":"https://www.sciencedirect.com/science/article/pii/S1364815224000343","source":{"id":"https://openalex.org/S113611870","display_name":"Environmental Modelling & Software","issn_l":"1364-8152","issn":["1364-8152","1873-6726"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Environmental Modelling &amp; Software","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.6899999976158142}],"awards":[{"id":"https://openalex.org/G2883446477","display_name":null,"funder_award_id":"398759560","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G5596253433","display_name":null,"funder_award_id":"94 844","funder_id":"https://openalex.org/F4320320882","funder_display_name":"Volkswagen Foundation"},{"id":"https://openalex.org/G7088541153","display_name":null,"funder_award_id":"492854267","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320320882","display_name":"Volkswagen Foundation","ror":"https://ror.org/03bsmfz84"},{"id":"https://openalex.org/F4320324521","display_name":"Freie Universit\u00e4t Berlin","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W4391718910.pdf","grobid_xml":"https://content.openalex.org/works/W4391718910.grobid-xml"},"referenced_works_count":32,"referenced_works":["https://openalex.org/W1165857955","https://openalex.org/W1966532532","https://openalex.org/W1983873795","https://openalex.org/W2006012747","https://openalex.org/W2037508882","https://openalex.org/W2063129379","https://openalex.org/W2073214776","https://openalex.org/W2077934066","https://openalex.org/W2090027043","https://openalex.org/W2110321840","https://openalex.org/W2131966673","https://openalex.org/W2145408484","https://openalex.org/W2150964548","https://openalex.org/W2617908299","https://openalex.org/W2635728130","https://openalex.org/W2769292247","https://openalex.org/W2892010203","https://openalex.org/W2898692812","https://openalex.org/W2944196828","https://openalex.org/W2949379258","https://openalex.org/W3006059603","https://openalex.org/W3011590841","https://openalex.org/W3014128467","https://openalex.org/W3184394125","https://openalex.org/W4242983673","https://openalex.org/W4281710139","https://openalex.org/W4286016502","https://openalex.org/W4293162394","https://openalex.org/W4392343276","https://openalex.org/W6669899955","https://openalex.org/W6746436044","https://openalex.org/W6798111327"],"related_works":["https://openalex.org/W2367063746","https://openalex.org/W601292351","https://openalex.org/W1583204413","https://openalex.org/W2335017665","https://openalex.org/W2348347833","https://openalex.org/W1547279692","https://openalex.org/W2086770499","https://openalex.org/W2984198677","https://openalex.org/W4238897586","https://openalex.org/W2363010783"],"abstract_inverted_index":{"Agent-based":[0],"vegetation":[1,19,33],"models":[2,141],"are":[3,24,40],"a":[4,53],"widely":[5],"used":[6,138],"tool":[7],"in":[8,81,117],"ecology,":[9],"for":[10,58,66],"example,":[11],"to":[12,20,83,129,139],"understand":[13],"and":[14,36,55,72,85,133,147],"predict":[15],"the":[16,67,107,125,131],"response":[17,82],"of":[18,29,69,74,104,110,145],"environmental":[21],"change.":[22],"Models":[23],"based":[25],"on":[26,114],"well-established":[27],"descriptions":[28],"processes":[30,116],"such":[31],"as":[32],"establishment,":[34],"growth":[35,60],"mortality.":[37],"However,":[38],"they":[39],"often":[41],"developed":[42],"from":[43],"scratch,":[44],"which":[45],"can":[46,98,136],"be":[47,99,137],"inefficient.":[48],"Here":[49,121],"we":[50,122],"present":[51,124],"pyMANGA,":[52],"free":[54],"open-source":[56],"platform":[57,132],"plant":[59],"modelers.":[61],"pyMANGA's":[62],"modular":[63],"design":[64],"allows":[65],"combination":[68],"different":[70,111,143],"concepts":[71],"theories":[73],"how":[75,134],"plants":[76],"establish,":[77],"grow":[78],"or":[79,90,96],"compete":[80],"above-":[84],"below-ground":[86],"resource":[87],"availability.":[88],"New":[89],"alternative":[91],"modules":[92,105],"describing,":[93],"e.g.,":[94,113],"competition":[95],"facilitation,":[97],"easily":[100],"added.":[101],"The":[102],"interchangeability":[103],"supports":[106],"systematic":[108],"testing":[109],"hypotheses,":[112],"dominant":[115],"soil-plant":[118],"feedback":[119],"loops.":[120],"further":[123],"thorough":[126],"benchmarking":[127],"strategy":[128],"maintain":[130],"pyMANGA":[135],"compare":[140],"with":[142],"levels":[144],"abstraction":[146],"complexity.":[148]},"counts_by_year":[{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":5}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
