{"id":"https://openalex.org/W7161163694","doi":"https://doi.org/10.1016/j.ecoinf.2026.103825","title":"Optimizing structural traits of fragmented Amazonian forests in an individual-based model of forest dynamics","display_name":"Optimizing structural traits of fragmented Amazonian forests in an individual-based model of forest dynamics","publication_year":2026,"publication_date":"2026-05-14","ids":{"openalex":"https://openalex.org/W7161163694","doi":"https://doi.org/10.1016/j.ecoinf.2026.103825"},"language":"en","primary_location":{"id":"doi:10.1016/j.ecoinf.2026.103825","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2026.103825","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://doi.org/10.1016/j.ecoinf.2026.103825","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005689307","display_name":"Eleanor Downie","orcid":"https://orcid.org/0000-0003-2329-4577"},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Eleanor Downie","raw_affiliation_strings":["Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136124253","display_name":"Rico Fischer","orcid":null},"institutions":[{"id":"https://openalex.org/I1326965316","display_name":"Julius K\u00fchn-Institut","ror":"https://ror.org/022d5qt08","country_code":"DE","type":"government","lineage":["https://openalex.org/I1326965316","https://openalex.org/I2801963157"]},{"id":"https://openalex.org/I137479271","display_name":"Helmholtz Centre for Environmental Research","ror":"https://ror.org/000h6jb29","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I137479271"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Rico Fischer","raw_affiliation_strings":["Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ Leipzig, Permoserstr. 15, 04318 Leipzig, Germany","Institute for Forest Protection, Julius K\u00fchn-Institute (JKI) - Federal Research Center for Cultivated Plants, Erwin-Baur-Str. 27, 06484 Quedlinburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Ecological Modelling, Helmholtz Centre for Environmental Research - UFZ Leipzig, Permoserstr. 15, 04318 Leipzig, Germany","institution_ids":["https://openalex.org/I137479271"]},{"raw_affiliation_string":"Institute for Forest Protection, Julius K\u00fchn-Institute (JKI) - Federal Research Center for Cultivated Plants, Erwin-Baur-Str. 27, 06484 Quedlinburg, Germany","institution_ids":["https://openalex.org/I1326965316"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079635848","display_name":"Nikolai Knapp","orcid":"https://orcid.org/0000-0001-5065-9979"},"institutions":[{"id":"https://openalex.org/I4210114884","display_name":"Eberswalde University for Sustainable Development","ror":"https://ror.org/01ge5zt06","country_code":"DE","type":"education","lineage":["https://openalex.org/I4210114884"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nikolai Knapp","raw_affiliation_strings":["Th\u00fcnen Institute of Forest Ecosystems, Eberswalde, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Th\u00fcnen Institute of Forest Ecosystems, Eberswalde, Germany","institution_ids":["https://openalex.org/I4210114884"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136170231","display_name":"Jos\u00e9 Lu\u00eds Camargo","orcid":null},"institutions":[{"id":"https://openalex.org/I187079419","display_name":"Instituto Nacional de Pesquisas da Amaz\u00f4nia","ror":"https://ror.org/01xe86309","country_code":"BR","type":"facility","lineage":["https://openalex.org/I187079419"]}],"countries":["BR"],"is_corresponding":false,"raw_author_name":"Jos\u00e9 Lu\u00eds Camargo","raw_affiliation_strings":["Coordination of Biodiversity, National Institute of Amazonian Research (INPA), Manaus, Brazil"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Coordination of Biodiversity, National Institute of Amazonian Research (INPA), Manaus, Brazil","institution_ids":["https://openalex.org/I187079419"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019097158","display_name":"Sara Alibakhshi","orcid":"https://orcid.org/0000-0003-2069-249X"},"institutions":[{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sara Alibakhshi","raw_affiliation_strings":["Chair of Data Science in Earth Observation, Technical University of Munich (TUM), 80333 Munich, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Chair of Data Science in Earth Observation, Technical University of Munich (TUM), 80333 Munich, Germany","institution_ids":["https://openalex.org/I62916508"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063198502","display_name":"Matheus Henrique Nunes","orcid":"https://orcid.org/0000-0001-9979-6456"},"institutions":[{"id":"https://openalex.org/I66946132","display_name":"University of Maryland, College Park","ror":"https://ror.org/047s2c258","country_code":"US","type":"education","lineage":["https://openalex.org/I66946132"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Matheus Henrique Nunes","raw_affiliation_strings":["Department of Geographical Sciences, University of Maryland, College Park, MD, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geographical Sciences, University of Maryland, College Park, MD, USA","institution_ids":["https://openalex.org/I66946132"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5136096302","display_name":"Erone Ghizoni Santos","orcid":null},"institutions":[{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]},{"id":"https://openalex.org/I4210118689","display_name":"Joint Research Centre","ror":"https://ror.org/02qezmz13","country_code":"IT","type":"government","lineage":["https://openalex.org/I1320481043","https://openalex.org/I2800387288","https://openalex.org/I4210118689","https://openalex.org/I4210161702"]}],"countries":["FI","IT"],"is_corresponding":false,"raw_author_name":"Erone Ghizoni Santos","raw_affiliation_strings":["Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland","European Commission, Joint Research Centre (JRC), Ispra, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"European Commission, Joint Research Centre (JRC), Ispra, Italy","institution_ids":["https://openalex.org/I4210118689"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5135541204","display_name":"Eduardo Eiji Maeda","orcid":"https://orcid.org/0000-0001-7932-1824"},"institutions":[{"id":"https://openalex.org/I1285790362","display_name":"Finnish Meteorological Institute","ror":"https://ror.org/05hppb561","country_code":"FI","type":"government","lineage":["https://openalex.org/I1284112523","https://openalex.org/I1285790362"]},{"id":"https://openalex.org/I133731052","display_name":"University of Helsinki","ror":"https://ror.org/040af2s02","country_code":"FI","type":"education","lineage":["https://openalex.org/I133731052"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Eduardo Eiji Maeda","raw_affiliation_strings":["Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland","Finnish Meteorological Institute, FMI, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Geosciences and Geography, University of Helsinki, Helsinki, Finland","institution_ids":["https://openalex.org/I133731052"]},{"raw_affiliation_string":"Finnish Meteorological Institute, FMI, Finland","institution_ids":["https://openalex.org/I1285790362"]}]}],"institutions":[],"countries_distinct_count":5,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5135541204"],"corresponding_institution_ids":["https://openalex.org/I1285790362","https://openalex.org/I133731052"],"apc_list":{"value":2510,"currency":"USD","value_usd":2510},"apc_paid":{"value":2510,"currency":"USD","value_usd":2510},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.61595038,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"96","issue":null,"first_page":"103825","last_page":"103825"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.32269999384880066,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10005","display_name":"Ecology and Vegetation Dynamics Studies","score":0.32269999384880066,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11880","display_name":"Forest ecology and management","score":0.2542000114917755,"subfield":{"id":"https://openalex.org/subfields/2309","display_name":"Nature and Landscape Conservation"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11753","display_name":"Forest Management and Policy","score":0.056299999356269836,"subfield":{"id":"https://openalex.org/subfields/2306","display_name":"Global and Planetary Change"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/amazonian","display_name":"Amazonian","score":0.7523999810218811},{"id":"https://openalex.org/keywords/forest-structure","display_name":"Forest structure","score":0.42250001430511475},{"id":"https://openalex.org/keywords/tropical-forest","display_name":"Tropical forest","score":0.39640000462532043},{"id":"https://openalex.org/keywords/forest-dynamics","display_name":"Forest dynamics","score":0.36230000853538513},{"id":"https://openalex.org/keywords/forest-ecology","display_name":"Forest ecology","score":0.3285999894142151},{"id":"https://openalex.org/keywords/amazon-rainforest","display_name":"Amazon rainforest","score":0.31209999322891235},{"id":"https://openalex.org/keywords/climate-change","display_name":"Climate change","score":0.30880001187324524},{"id":"https://openalex.org/keywords/forest-cover","display_name":"Forest cover","score":0.3068000078201294}],"concepts":[{"id":"https://openalex.org/C2780001261","wikidata":"https://www.wikidata.org/wiki/Q391376","display_name":"Amazonian","level":3,"score":0.7523999810218811},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.5511000156402588},{"id":"https://openalex.org/C2983469836","wikidata":"https://www.wikidata.org/wiki/Q4421","display_name":"Forest structure","level":3,"score":0.42250001430511475},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.3968999981880188},{"id":"https://openalex.org/C2776285232","wikidata":"https://www.wikidata.org/wiki/Q1048194","display_name":"Tropical forest","level":2,"score":0.39640000462532043},{"id":"https://openalex.org/C2776107028","wikidata":"https://www.wikidata.org/wiki/Q3008355","display_name":"Forest dynamics","level":2,"score":0.36230000853538513},{"id":"https://openalex.org/C39432304","wikidata":"https://www.wikidata.org/wiki/Q188847","display_name":"Environmental science","level":0,"score":0.3345000147819519},{"id":"https://openalex.org/C54286561","wikidata":"https://www.wikidata.org/wiki/Q397350","display_name":"Agroforestry","level":1,"score":0.33230000734329224},{"id":"https://openalex.org/C73935091","wikidata":"https://www.wikidata.org/wiki/Q2249329","display_name":"Forest ecology","level":3,"score":0.3285999894142151},{"id":"https://openalex.org/C535291247","wikidata":"https://www.wikidata.org/wiki/Q177567","display_name":"Amazon rainforest","level":2,"score":0.31209999322891235},{"id":"https://openalex.org/C132651083","wikidata":"https://www.wikidata.org/wiki/Q7942","display_name":"Climate change","level":2,"score":0.30880001187324524},{"id":"https://openalex.org/C2986088632","wikidata":"https://www.wikidata.org/wiki/Q4259364","display_name":"Forest cover","level":2,"score":0.3068000078201294},{"id":"https://openalex.org/C2619416","wikidata":"https://www.wikidata.org/wiki/Q9444","display_name":"Rainforest","level":2,"score":0.29409998655319214},{"id":"https://openalex.org/C110872660","wikidata":"https://www.wikidata.org/wiki/Q37813","display_name":"Ecosystem","level":2,"score":0.29010000824928284},{"id":"https://openalex.org/C185933670","wikidata":"https://www.wikidata.org/wiki/Q52105","display_name":"Habitat","level":2,"score":0.2856000065803528},{"id":"https://openalex.org/C2777399953","wikidata":"https://www.wikidata.org/wiki/Q2155658","display_name":"Deforestation (computer science)","level":2,"score":0.2849999964237213},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.2752000093460083},{"id":"https://openalex.org/C66204764","wikidata":"https://www.wikidata.org/wiki/Q219416","display_name":"Sustainability","level":2,"score":0.2694999873638153},{"id":"https://openalex.org/C105234605","wikidata":"https://www.wikidata.org/wiki/Q518808","display_name":"Keystone species","level":3,"score":0.2574999928474426},{"id":"https://openalex.org/C2776133958","wikidata":"https://www.wikidata.org/wiki/Q7918366","display_name":"Vegetation (pathology)","level":2,"score":0.25270000100135803}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.ecoinf.2026.103825","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2026.103825","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"}],"best_oa_location":{"id":"doi:10.1016/j.ecoinf.2026.103825","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.ecoinf.2026.103825","pdf_url":null,"source":{"id":"https://openalex.org/S195809937","display_name":"Ecological Informatics","issn_l":"1574-9541","issn":["1574-9541","1878-0512"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Ecological Informatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5612010955810547,"display_name":"Life in Land"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320335062","display_name":"Biotieteiden ja Ymp\u00e4rist\u00f6n Tutkimuksen Toimikunta","ror":"https://ror.org/05k73zm37"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":43,"referenced_works":["https://openalex.org/W1761512167","https://openalex.org/W1779399445","https://openalex.org/W1951724000","https://openalex.org/W2002390308","https://openalex.org/W2003518636","https://openalex.org/W2020632805","https://openalex.org/W2036608500","https://openalex.org/W2037356735","https://openalex.org/W2037480004","https://openalex.org/W2041895658","https://openalex.org/W2053137532","https://openalex.org/W2059658848","https://openalex.org/W2069448034","https://openalex.org/W2092436967","https://openalex.org/W2107577415","https://openalex.org/W2108965448","https://openalex.org/W2127657748","https://openalex.org/W2136641634","https://openalex.org/W2154981955","https://openalex.org/W2225955099","https://openalex.org/W2394413942","https://openalex.org/W2590592654","https://openalex.org/W2604176572","https://openalex.org/W2613355508","https://openalex.org/W2757166291","https://openalex.org/W2767594761","https://openalex.org/W2769097220","https://openalex.org/W2769933020","https://openalex.org/W2789533448","https://openalex.org/W2801570683","https://openalex.org/W2809471268","https://openalex.org/W2917072448","https://openalex.org/W3012679073","https://openalex.org/W3089779876","https://openalex.org/W3126345693","https://openalex.org/W3135553013","https://openalex.org/W3160034263","https://openalex.org/W3196326529","https://openalex.org/W3213582887","https://openalex.org/W4205748444","https://openalex.org/W4212988738","https://openalex.org/W4391360414","https://openalex.org/W7126232803"],"related_works":[],"abstract_inverted_index":{"The":[0],"study":[1,137,216],"of":[2,11,27,41,47,53,80,93,120,155,179,220,230],"forest":[3,29,34,57,70,83,123,222],"fragmentation":[4,20,48,71,124],"has":[5],"gained":[6],"increased":[7],"importance":[8],"in":[9,16,89,95,126,143,158,224],"light":[10],"the":[12,23,33,42,50,78,90,106,127,152,182,210,218,226],"ongoing":[13],"human-induced":[14],"deforestation":[15],"tropical":[17,28,54,234],"regions.":[18],"Forest":[19,101],"can":[21],"alter":[22],"structure":[24],"and":[25,44,175,192,228],"functioning":[26],"remnants":[30],"far":[31],"from":[32,105],"edge.":[35],"However,":[36,161],"there":[37],"is":[38],"limited":[39],"understanding":[40,62],"long-term":[43,65],"large-scale":[45],"consequences":[46],"on":[49,233],"structural":[51,102],"characteristics":[52],"forests.":[55,160,235],"Dynamic":[56],"models":[58,223],"may":[59],"improve":[60],"our":[61],"by":[63,69,99,162,213],"simulating":[64],"ecological":[66],"processes":[67],"induced":[68],"under":[72],"different":[73],"biogeographical":[74],"settings.":[75],"We":[76],"evaluated":[77],"ability":[79],"a":[81,121,164,177],"state-of-the-art":[82],"growth":[84],"model":[85,107,132,178,183],"to":[86,136,166,205,209],"reproduce":[87,151],"changes":[88,232],"three-dimensional":[91],"distribution":[92,154],"plants":[94],"Amazonian":[96],"forests":[97],"affected":[98],"fragmentation.":[100],"metrics":[103],"extracted":[104],"simulations":[108],"were":[109],"compared":[110],"with":[111],"those":[112],"obtained":[113],"using":[114],"high-resolution":[115],"terrestrial":[116],"laser":[117],"scans":[118],"(TLS)":[119],"40-year-old":[122],"experiment":[125],"Brazilian":[128],"Amazon.":[129],"Our":[130,215],"chosen":[131],"had":[133],"some":[134],"functionality":[135],"edge":[138,173,206],"effects,":[139,207],"but":[140],"did":[141],"not,":[142],"its":[144],"existing":[145],"form,":[146],"capture":[147],"their":[148],"complexity,":[149],"or":[150],"vertical":[153],"plant":[156],"material":[157],"old-growth":[159],"adding":[163],"parameter":[165],"optimize":[167],"tree":[168],"mortality":[169],"rates":[170],"at":[171,194],"varying":[172,195],"distances,":[174],"incorporating":[176],"understory":[180],"vegetation,":[181],"performance":[184],"improved":[185,203],"substantially.":[186],"Total":[187],"Plant":[188],"Area":[189],"Index":[190],"(PAI),":[191],"PAI":[193],"height":[196],"intervals,":[197],"amongst":[198],"other":[199],"metrics,":[200],"showed":[201],"greatly":[202],"responses":[204],"closer":[208],"real-world":[211],"observations":[212],"TLS.":[214],"highlights":[217],"potential":[219],"well-calibrated":[221],"examining":[225],"mechanisms":[227],"impact":[229],"environmental":[231]},"counts_by_year":[],"updated_date":"2026-06-18T08:10:14.011955","created_date":"2026-05-15T00:00:00"}
