{"id":"https://openalex.org/W4391685418","doi":"https://doi.org/10.1016/j.datak.2024.102284","title":"Improving the identification of relevant variants in genome information systems: A methodological approach with a case study on early onset Alzheimer's disease","display_name":"Improving the identification of relevant variants in genome information systems: A methodological approach with a case study on early onset Alzheimer's disease","publication_year":2024,"publication_date":"2024-02-09","ids":{"openalex":"https://openalex.org/W4391685418","doi":"https://doi.org/10.1016/j.datak.2024.102284"},"language":"en","primary_location":{"id":"doi:10.1016/j.datak.2024.102284","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1016/j.datak.2024.102284","pdf_url":null,"source":{"id":"https://openalex.org/S136993123","display_name":"Data & Knowledge Engineering","issn_l":"0169-023X","issn":["0169-023X","1872-6933"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data &amp; Knowledge Engineering","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"http://dx.doi.org/10.1016/j.datak.2024.102284","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5005360899","display_name":"Mireia Costa","orcid":"https://orcid.org/0000-0002-8614-0914"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"Mireia Costa","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090084456","display_name":"Ana Le\u00f3n Palacio","orcid":"https://orcid.org/0000-0003-3516-8893"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Ana Le\u00f3n","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5028443098","display_name":"\u00d3scar Pastor","orcid":"https://orcid.org/0000-0002-1320-8471"},"institutions":[{"id":"https://openalex.org/I60053951","display_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","ror":"https://ror.org/01460j859","country_code":"ES","type":"education","lineage":["https://openalex.org/I60053951"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"\u00d3scar Pastor","raw_affiliation_strings":["Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain"],"affiliations":[{"raw_affiliation_string":"Universitat Polit\u00e8cnica de Val\u00e8ncia, Valencia 46022, Spain","institution_ids":["https://openalex.org/I60053951"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5005360899"],"corresponding_institution_ids":["https://openalex.org/I60053951"],"apc_list":{"value":2590,"currency":"USD","value_usd":2590},"apc_paid":{"value":2590,"currency":"USD","value_usd":2590},"fwci":0.5829,"has_fulltext":false,"cited_by_count":1,"citation_normalized_percentile":{"value":0.6946114,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":94},"biblio":{"volume":"151","issue":null,"first_page":"102284","last_page":"102284"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11642","display_name":"Genomics and Rare Diseases","score":0.9984999895095825,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9947999715805054,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9925000071525574,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.759753942489624},{"id":"https://openalex.org/keywords/disease","display_name":"Disease","score":0.6722804307937622},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5270086526870728},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.5140684843063354},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4344385862350464},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.4207778573036194},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.335227370262146},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.33395150303840637},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.2572789192199707},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.18070027232170105},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.10285207629203796}],"concepts":[{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.759753942489624},{"id":"https://openalex.org/C2779134260","wikidata":"https://www.wikidata.org/wiki/Q12136","display_name":"Disease","level":2,"score":0.6722804307937622},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5270086526870728},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.5140684843063354},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4344385862350464},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.4207778573036194},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.335227370262146},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.33395150303840637},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.2572789192199707},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.18070027232170105},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.10285207629203796},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1016/j.datak.2024.102284","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1016/j.datak.2024.102284","pdf_url":null,"source":{"id":"https://openalex.org/S136993123","display_name":"Data & Knowledge Engineering","issn_l":"0169-023X","issn":["0169-023X","1872-6933"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data &amp; Knowledge Engineering","raw_type":"journal-article"},{"id":"pmh:oai:riunet.upv.es:10251/214809","is_oa":false,"landing_page_url":"http://hdl.handle.net/10251/214809","pdf_url":null,"source":{"id":"https://openalex.org/S4306401500","display_name":"RiuNet (Politechnical University of Valencia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I60053951","host_organization_name":"Universitat Polit\u00e8cnica de Val\u00e8ncia","host_organization_lineage":["https://openalex.org/I60053951"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1016/j.datak.2024.102284","is_oa":true,"landing_page_url":"http://dx.doi.org/10.1016/j.datak.2024.102284","pdf_url":null,"source":{"id":"https://openalex.org/S136993123","display_name":"Data & Knowledge Engineering","issn_l":"0169-023X","issn":["0169-023X","1872-6933"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Data &amp; Knowledge Engineering","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2758663728","display_name":null,"funder_award_id":"PID2021-123824OB-I00","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G3304504461","display_name":null,"funder_award_id":"ACIF/2021/117","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"},{"id":"https://openalex.org/G4998220388","display_name":null,"funder_award_id":"CIPROM/2021/023","funder_id":"https://openalex.org/F4320321864","funder_display_name":"Generalitat Valenciana"}],"funders":[{"id":"https://openalex.org/F4320321864","display_name":"Generalitat Valenciana","ror":"https://ror.org/0097mvx21"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320335598","display_name":"Agencia Estatal de Investigaci\u00f3n","ror":null}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":38,"referenced_works":["https://openalex.org/W1564417183","https://openalex.org/W2051978340","https://openalex.org/W2059600528","https://openalex.org/W2116868464","https://openalex.org/W2132073122","https://openalex.org/W2266996964","https://openalex.org/W2306696647","https://openalex.org/W2528915120","https://openalex.org/W2530196804","https://openalex.org/W2549262616","https://openalex.org/W2580313249","https://openalex.org/W2620580656","https://openalex.org/W2770026599","https://openalex.org/W2777225278","https://openalex.org/W2778838015","https://openalex.org/W2806615521","https://openalex.org/W2897528226","https://openalex.org/W2901303766","https://openalex.org/W2909307829","https://openalex.org/W2911561283","https://openalex.org/W2963391584","https://openalex.org/W2989724320","https://openalex.org/W2999471177","https://openalex.org/W3034282805","https://openalex.org/W3095106256","https://openalex.org/W3152157423","https://openalex.org/W4234059360","https://openalex.org/W4238403520","https://openalex.org/W4296048617","https://openalex.org/W4308627568","https://openalex.org/W4313351103","https://openalex.org/W4392939440","https://openalex.org/W6679415103","https://openalex.org/W6729071491","https://openalex.org/W6752896163","https://openalex.org/W6756677404","https://openalex.org/W6770069758","https://openalex.org/W6848912732"],"related_works":["https://openalex.org/W2086525401","https://openalex.org/W2006735166","https://openalex.org/W2079327011","https://openalex.org/W2053325634","https://openalex.org/W3178279768","https://openalex.org/W193851735","https://openalex.org/W2898732673","https://openalex.org/W2773861473","https://openalex.org/W1971903861","https://openalex.org/W2410053581"],"abstract_inverted_index":{"Alzheimer's":[0,136],"disease":[1,110,149],"is":[2,14,20,29,42,57],"the":[3,10,26,30,74,93,128,131,140,164,169,185,230,234],"most":[4,31],"common":[5],"type":[6],"of":[7,63,135,147,163,180,183,197,202,233],"dementia":[8],"in":[9,34,59,82,111],"elderly.":[11],"Nevertheless,":[12],"there":[13],"an":[15,60,161],"early":[16,132],"onset":[17,133],"form":[18,134],"that":[19,226],"difficult":[21],"to":[22,44,71,79,92,103,130,143,172,176],"diagnose":[23],"precisely.":[24],"As":[25,194],"genetic":[27,40,231],"component":[28],"critical":[32],"factor":[33],"developing":[35],"this":[36,112,148,198],"disease,":[37],"identifying":[38,105],"relevant":[39,106,122],"variants":[41,56,107,123,204,209],"key":[43],"obtaining":[45],"a":[46,83,109,177,195,200,212,223],"more":[47],"reliable":[48],"and":[49,155,215,228],"straightforward":[50],"diagnosis.":[51],"The":[52,98],"information":[53,75],"about":[54],"these":[55],"stored":[58],"extensive":[61],"number":[62],"data":[64],"sources,":[65],"which":[66],"must":[67],"be":[68,80],"carefully":[69],"analyzed":[70],"select":[72],"only":[73],"with":[76,211,218],"sufficient":[77],"quality":[78],"used":[81],"clinical":[84],"setting.":[85],"This":[86,158,221],"selection":[87],"has":[88,188,205],"become":[89],"complex":[90],"due":[91],"increasing":[94],"available":[95],"genomic":[96],"information.":[97],"SILE":[99,120,170],"method":[100,129,141,171],"was":[101],"designed":[102],"systematize":[104],"for":[108],"challenging":[113],"context.":[114],"However,":[115],"several":[116],"problems":[117],"on":[118],"how":[119,184],"identifies":[121],"were":[124],"discovered":[125],"when":[126],"applying":[127],"disease.":[137,235],"More":[138],"specifically,":[139],"failed":[142],"address":[144],"specific":[145],"features":[146],"such":[150],"as":[151],"its":[152],"low":[153],"incidence":[154],"familiar":[156],"component.":[157],"paper":[159],"proposes":[160],"improvement":[162],"identification":[165],"process":[166],"defined":[167],"by":[168],"make":[173],"it":[174],"applicable":[175],"further":[178],"spectrum":[179],"diseases.":[181],"Details":[182],"proposed":[186],"solution":[187],"been":[189,206],"applied":[190],"are":[191],"also":[192],"reported.":[193],"result":[196,225],"improvement,":[199],"set":[201],"29":[203],"identified":[207],"(25":[208],"Accepted":[210,217],"Limited":[213],"Evidence":[214],"4":[216],"Moderate":[219],"Evidence).":[220],"constitutes":[222],"valuable":[224],"facilitates":[227],"reinforces":[229],"diagnosis":[232]},"counts_by_year":[{"year":2024,"cited_by_count":1}],"updated_date":"2026-02-03T00:53:05.648605","created_date":"2025-10-10T00:00:00"}
