{"id":"https://openalex.org/W7165133418","doi":"https://doi.org/10.1016/j.cosrev.2026.101026","title":"Biological sequence clustering: A survey","display_name":"Biological sequence clustering: A survey","publication_year":2026,"publication_date":"2026-06-18","ids":{"openalex":"https://openalex.org/W7165133418","doi":"https://doi.org/10.1016/j.cosrev.2026.101026"},"language":"en","primary_location":{"id":"doi:10.1016/j.cosrev.2026.101026","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.cosrev.2026.101026","pdf_url":null,"source":{"id":"https://openalex.org/S73121659","display_name":"Computer Science Review","issn_l":"1574-0137","issn":["1574-0137","1876-7745"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Science Review","raw_type":"journal-article"},"type":"article","indexed_in":["crossref"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100857955","display_name":"SB Zhang","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Simeng Zhang","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5032066380","display_name":"X LIU","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Xinying Liu","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100899534","display_name":"Jun Lou","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jun Lou","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138884385","display_name":"Mudi Jiang","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mudi Jiang","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5138941738","display_name":"Quan Zou","orcid":null},"institutions":[{"id":"https://openalex.org/I150229711","display_name":"University of Electronic Science and Technology of China","ror":"https://ror.org/04qr3zq92","country_code":"CN","type":"education","lineage":["https://openalex.org/I150229711"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Quan Zou","raw_affiliation_strings":["Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, Chengdu, China","institution_ids":["https://openalex.org/I150229711"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5138895196","display_name":"Zengyou He","orcid":null},"institutions":[{"id":"https://openalex.org/I27357992","display_name":"Dalian University of Technology","ror":"https://ror.org/023hj5876","country_code":"CN","type":"education","lineage":["https://openalex.org/I27357992"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Zengyou He","raw_affiliation_strings":["School of Software, Dalian University of Technology, Dalian, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Software, Dalian University of Technology, Dalian, China","institution_ids":["https://openalex.org/I27357992"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5138895196"],"corresponding_institution_ids":["https://openalex.org/I27357992"],"apc_list":{"value":3300,"currency":"USD","value_usd":3300},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.75877841,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"62","issue":null,"first_page":"101026","last_page":"101026"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.44609999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.44609999656677246,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.1395999938249588,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.08720000088214874,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8385000228881836},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.583899974822998},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5695000290870667},{"id":"https://openalex.org/keywords/sequence","display_name":"Sequence (biology)","score":0.5454999804496765},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.5182999968528748},{"id":"https://openalex.org/keywords/biological-database","display_name":"Biological database","score":0.4814999997615814},{"id":"https://openalex.org/keywords/similarity","display_name":"Similarity (geometry)","score":0.44190001487731934},{"id":"https://openalex.org/keywords/brown-clustering","display_name":"Brown clustering","score":0.4058000147342682}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8385000228881836},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7179999947547913},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.583899974822998},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5695000290870667},{"id":"https://openalex.org/C2778112365","wikidata":"https://www.wikidata.org/wiki/Q3511065","display_name":"Sequence (biology)","level":2,"score":0.5454999804496765},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.5182999968528748},{"id":"https://openalex.org/C20901353","wikidata":"https://www.wikidata.org/wiki/Q4117139","display_name":"Biological database","level":2,"score":0.4814999997615814},{"id":"https://openalex.org/C103278499","wikidata":"https://www.wikidata.org/wiki/Q254465","display_name":"Similarity (geometry)","level":3,"score":0.44190001487731934},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4392000138759613},{"id":"https://openalex.org/C167984511","wikidata":"https://www.wikidata.org/wiki/Q17003931","display_name":"Brown clustering","level":5,"score":0.4058000147342682},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3912000060081482},{"id":"https://openalex.org/C2780801425","wikidata":"https://www.wikidata.org/wiki/Q5164392","display_name":"Construct (python library)","level":2,"score":0.3813999891281128},{"id":"https://openalex.org/C186767784","wikidata":"https://www.wikidata.org/wiki/Q5162841","display_name":"Consensus clustering","level":5,"score":0.3296999931335449},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.3093000054359436},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.3001999855041504},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.2897999882698059},{"id":"https://openalex.org/C144817290","wikidata":"https://www.wikidata.org/wiki/Q2976575","display_name":"Biclustering","level":5,"score":0.28279998898506165},{"id":"https://openalex.org/C61053724","wikidata":"https://www.wikidata.org/wiki/Q1154615","display_name":"Sequence analysis","level":3,"score":0.2775999903678894},{"id":"https://openalex.org/C117745874","wikidata":"https://www.wikidata.org/wiki/Q901612","display_name":"Sequence motif","level":3,"score":0.2718000113964081},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.27000001072883606},{"id":"https://openalex.org/C177937566","wikidata":"https://www.wikidata.org/wiki/Q4223102","display_name":"Document clustering","level":3,"score":0.263700008392334},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.2533000111579895},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2515000104904175}],"mesh":[],"locations_count":1,"locations":[{"id":"doi:10.1016/j.cosrev.2026.101026","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.cosrev.2026.101026","pdf_url":null,"source":{"id":"https://openalex.org/S73121659","display_name":"Computer Science Review","issn_l":"1574-0137","issn":["1574-0137","1876-7745"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computer Science Review","raw_type":"journal-article"}],"best_oa_location":null,"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/8","score":0.6479990482330322,"display_name":"Decent work and economic growth"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":153,"referenced_works":["https://openalex.org/W1514764738","https://openalex.org/W1766517752","https://openalex.org/W1920522451","https://openalex.org/W1967843471","https://openalex.org/W1968363797","https://openalex.org/W1970392534","https://openalex.org/W1977668719","https://openalex.org/W1986075313","https://openalex.org/W1997268601","https://openalex.org/W1997730991","https://openalex.org/W2006836764","https://openalex.org/W2008386840","https://openalex.org/W2008714912","https://openalex.org/W2009694791","https://openalex.org/W2025869557","https://openalex.org/W2030782070","https://openalex.org/W2031006817","https://openalex.org/W2032345031","https://openalex.org/W2048811233","https://openalex.org/W2048987277","https://openalex.org/W2052426953","https://openalex.org/W2062842656","https://openalex.org/W2068308871","https://openalex.org/W2073548709","https://openalex.org/W2077770566","https://openalex.org/W2078958937","https://openalex.org/W2082819719","https://openalex.org/W2086551961","https://openalex.org/W2088833470","https://openalex.org/W2089649677","https://openalex.org/W2093634337","https://openalex.org/W2093794723","https://openalex.org/W2097606916","https://openalex.org/W2103187775","https://openalex.org/W2103947923","https://openalex.org/W2107856523","https://openalex.org/W2108166985","https://openalex.org/W2108211735","https://openalex.org/W2108718991","https://openalex.org/W2117228324","https://openalex.org/W2119284380","https://openalex.org/W2119894516","https://openalex.org/W2121297744","https://openalex.org/W2122673596","https://openalex.org/W2124166542","https://openalex.org/W2124351063","https://openalex.org/W2130208436","https://openalex.org/W2131159440","https://openalex.org/W2133828198","https://openalex.org/W2135083016","https://openalex.org/W2138366649","https://openalex.org/W2140638310","https://openalex.org/W2144221002","https://openalex.org/W2145015685","https://openalex.org/W2145853890","https://openalex.org/W2146213764","https://openalex.org/W2149616469","https://openalex.org/W2150914285","https://openalex.org/W2151350595","https://openalex.org/W2151370125","https://openalex.org/W2156125289","https://openalex.org/W2159959024","https://openalex.org/W2160209604","https://openalex.org/W2160681728","https://openalex.org/W2162315106","https://openalex.org/W2163681976","https://openalex.org/W2164078810","https://openalex.org/W2167519901","https://openalex.org/W2170747616","https://openalex.org/W2171196697","https://openalex.org/W2171963266","https://openalex.org/W2257287664","https://openalex.org/W2258865027","https://openalex.org/W2288445713","https://openalex.org/W2513506562","https://openalex.org/W2540579902","https://openalex.org/W2564293829","https://openalex.org/W2566001817","https://openalex.org/W2600768097","https://openalex.org/W2605830019","https://openalex.org/W2607937729","https://openalex.org/W2610066872","https://openalex.org/W2622369200","https://openalex.org/W2736165626","https://openalex.org/W2761430568","https://openalex.org/W2762557867","https://openalex.org/W2774657098","https://openalex.org/W2784508392","https://openalex.org/W2785239010","https://openalex.org/W2805806886","https://openalex.org/W2811244727","https://openalex.org/W2884258548","https://openalex.org/W2884538216","https://openalex.org/W2900506464","https://openalex.org/W2919121574","https://openalex.org/W2921129204","https://openalex.org/W2949102320","https://openalex.org/W2949155040","https://openalex.org/W2949346354","https://openalex.org/W2950150251","https://openalex.org/W2950589160","https://openalex.org/W2951971263","https://openalex.org/W2952681371","https://openalex.org/W2953008890","https://openalex.org/W2957503884","https://openalex.org/W2969491951","https://openalex.org/W2972805712","https://openalex.org/W2973120179","https://openalex.org/W2991913838","https://openalex.org/W2999958350","https://openalex.org/W3003753408","https://openalex.org/W3093172834","https://openalex.org/W3134393247","https://openalex.org/W3137029520","https://openalex.org/W3202942824","https://openalex.org/W3207596651","https://openalex.org/W3216588755","https://openalex.org/W3216778212","https://openalex.org/W4205133233","https://openalex.org/W4220791336","https://openalex.org/W4226107243","https://openalex.org/W4251919163","https://openalex.org/W4281753295","https://openalex.org/W4281812964","https://openalex.org/W4292266001","https://openalex.org/W4319599390","https://openalex.org/W4323670057","https://openalex.org/W4324020280","https://openalex.org/W4324116459","https://openalex.org/W4377011795","https://openalex.org/W4377563994","https://openalex.org/W4385897776","https://openalex.org/W4386458837","https://openalex.org/W4387308940","https://openalex.org/W4388627063","https://openalex.org/W4391228942","https://openalex.org/W4392922351","https://openalex.org/W4394581382","https://openalex.org/W4399263844","https://openalex.org/W4402473632","https://openalex.org/W4402954016","https://openalex.org/W4403649421","https://openalex.org/W4405514853","https://openalex.org/W4405769533","https://openalex.org/W4407464433","https://openalex.org/W4407702832","https://openalex.org/W4409293647","https://openalex.org/W4409844223","https://openalex.org/W4410325846","https://openalex.org/W4411009890","https://openalex.org/W4411263302","https://openalex.org/W4412404067","https://openalex.org/W7117569513"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-06-20T20:08:15.867695","created_date":"2026-06-19T00:00:00"}
