{"id":"https://openalex.org/W7166885604","doi":"https://doi.org/10.1016/j.compbiomed.2026.111843","title":"An AI-driven deep learning pipeline for taxonomic classification and biodiversity assessment of deep-sea environmental DNA","display_name":"An AI-driven deep learning pipeline for taxonomic classification and biodiversity assessment of deep-sea environmental DNA","publication_year":2026,"publication_date":"2026-07-02","ids":{"openalex":"https://openalex.org/W7166885604","doi":"https://doi.org/10.1016/j.compbiomed.2026.111843","pmid":"https://pubmed.ncbi.nlm.nih.gov/42391735"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2026.111843","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111843","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5139789131","display_name":"Disha R. Gowda","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Disha R. Gowda","raw_affiliation_strings":["School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: disha.rgowda2025@vitstudent.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: disha.rgowda2025@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139820922","display_name":"Adhyeta Sutradhar","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Adhyeta Sutradhar","raw_affiliation_strings":["School of Electronics Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: adhyeta.sutradhar2025@vitstudent.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: adhyeta.sutradhar2025@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139815933","display_name":"Parth Gupta","orcid":"https://orcid.org/0009-0001-2767-2275"},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Parth Gupta","raw_affiliation_strings":["School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: parth.gupta2025@vitstudent.ac.in"],"raw_orcid":"https://orcid.org/0009-0001-2767-2275","affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: parth.gupta2025@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139816184","display_name":"S. Joyce Blessinah","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"S. Joyce Blessinah","raw_affiliation_strings":["School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: joyceblessinah.s2025@vitstudent.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computer Science and Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: joyceblessinah.s2025@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5139762877","display_name":"K.V. Dimple Shree","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"K.V. Dimple Shree","raw_affiliation_strings":["School of Electronics Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: kv.dimpleshree2025@vitstudent.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electronics Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: kv.dimpleshree2025@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5017337728","display_name":"Albert Alexander Stonier","orcid":"https://orcid.org/0000-0002-3572-2885"},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Albert Alexander Stonier","raw_affiliation_strings":["School of Electrical Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: albert.alexander@vit.ac.in"],"raw_orcid":"https://orcid.org/0000-0002-3572-2885","affiliations":[{"raw_affiliation_string":"School of Electrical Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: albert.alexander@vit.ac.in","institution_ids":["https://openalex.org/I876193797"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5139736342","display_name":"N. Subramanian","orcid":null},"institutions":[{"id":"https://openalex.org/I876193797","display_name":"Vellore Institute of Technology University","ror":"https://ror.org/00qzypv28","country_code":"IN","type":"education","lineage":["https://openalex.org/I876193797"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"N. Subramanian","raw_affiliation_strings":["School of Electrical Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: subramanian.n2023a@vitstudent.ac.in"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Electrical Engineering, Vellore Institute of Technology, Vellore, India. Electronic address: subramanian.n2023a@vitstudent.ac.in","institution_ids":["https://openalex.org/I876193797"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5017337728"],"corresponding_institution_ids":["https://openalex.org/I876193797"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.69637949,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"213","issue":null,"first_page":"111843","last_page":"111843"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.9919000267982483,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10765","display_name":"Marine Biology and Ecology Research","score":0.0007999999797903001,"subfield":{"id":"https://openalex.org/subfields/1910","display_name":"Oceanography"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.000699999975040555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7609999775886536},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.6816999912261963},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.5763000249862671},{"id":"https://openalex.org/keywords/environmental-dna","display_name":"Environmental DNA","score":0.565500020980835},{"id":"https://openalex.org/keywords/biological-classification","display_name":"Biological classification","score":0.43880000710487366}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7609999775886536},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.6816999912261963},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5848000049591064},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.5763000249862671},{"id":"https://openalex.org/C2779969263","wikidata":"https://www.wikidata.org/wiki/Q25098939","display_name":"Environmental DNA","level":3,"score":0.565500020980835},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5221999883651733},{"id":"https://openalex.org/C48702757","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Biological classification","level":2,"score":0.43880000710487366},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3822999894618988},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.32519999146461487},{"id":"https://openalex.org/C107826830","wikidata":"https://www.wikidata.org/wiki/Q929380","display_name":"Environmental resource management","level":1,"score":0.2833000123500824},{"id":"https://openalex.org/C58642233","wikidata":"https://www.wikidata.org/wiki/Q8269924","display_name":"Taxonomy (biology)","level":2,"score":0.2671000063419342},{"id":"https://openalex.org/C15151743","wikidata":"https://www.wikidata.org/wiki/Q903778","display_name":"Metagenomics","level":3,"score":0.2508000135421753},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.2506999969482422}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000080309","descriptor_name":"DNA, Environmental","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009792","descriptor_name":"Oceans and Seas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009792","descriptor_name":"Oceans and Seas","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2026.111843","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111843","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:42391735","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42391735","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":"Journal Article"}],"best_oa_location":null,"sustainable_development_goals":[{"display_name":"Life below water","score":0.7912613153457642,"id":"https://metadata.un.org/sdg/14"}],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":15,"referenced_works":["https://openalex.org/W1996816368","https://openalex.org/W2063580733","https://openalex.org/W2072970694","https://openalex.org/W2103901746","https://openalex.org/W2105073200","https://openalex.org/W2106925353","https://openalex.org/W2401404581","https://openalex.org/W2614041139","https://openalex.org/W2938868597","https://openalex.org/W2963276645","https://openalex.org/W3127238141","https://openalex.org/W4223460700","https://openalex.org/W4387338457","https://openalex.org/W4407563219","https://openalex.org/W4413878637"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-08-08T07:41:36.138363","created_date":"2026-07-02T00:00:00"}
