{"id":"https://openalex.org/W7160270891","doi":"https://doi.org/10.1016/j.compbiomed.2026.111714","title":"Ensemble threshold Boolean modeling reveals robust attractors and regulatory drivers in pediatric leukemia","display_name":"Ensemble threshold Boolean modeling reveals robust attractors and regulatory drivers in pediatric leukemia","publication_year":2026,"publication_date":"2026-05-05","ids":{"openalex":"https://openalex.org/W7160270891","doi":"https://doi.org/10.1016/j.compbiomed.2026.111714","pmid":"https://pubmed.ncbi.nlm.nih.gov/42090947"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2026.111714","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111714","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.compbiomed.2026.111714","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5118666304","display_name":"Hadeel Kittaneh","orcid":null},"institutions":[{"id":"https://openalex.org/I199440890","display_name":"American University of Sharjah","ror":"https://ror.org/001g2fj96","country_code":"AE","type":"education","lineage":["https://openalex.org/I199440890"]}],"countries":["AE"],"is_corresponding":false,"raw_author_name":"Hadeel Kittaneh","raw_affiliation_strings":["Department of Mathematics and Statistics, American University of Sharjah, Sharjah, United Arab Emirates"],"raw_orcid":"https://orcid.org/0000-0002-6369-4623","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, American University of Sharjah, Sharjah, United Arab Emirates","institution_ids":["https://openalex.org/I199440890"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010454141","display_name":"Filippo Castiglione","orcid":"https://orcid.org/0000-0002-1442-3552"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Filippo Castiglione","raw_affiliation_strings":["Institute for Applied Computing, National Researcher Council of Italy, Rome, Italy; Medicine Department - Pulmonary Systems Medicine, University of Florida, Gainesville, FL, USA"],"raw_orcid":"https://orcid.org/0000-0002-1442-3552","affiliations":[{"raw_affiliation_string":"Institute for Applied Computing, National Researcher Council of Italy, Rome, Italy; Medicine Department - Pulmonary Systems Medicine, University of Florida, Gainesville, FL, USA","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043881228","display_name":"Arcangelo Liso","orcid":"https://orcid.org/0000-0001-5638-227X"},"institutions":[{"id":"https://openalex.org/I27483092","display_name":"University of Perugia","ror":"https://ror.org/00x27da85","country_code":"IT","type":"education","lineage":["https://openalex.org/I27483092"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Arcangelo Liso","raw_affiliation_strings":["Department of Medicine and Surgery, University of Perugia, Perugia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Medicine and Surgery, University of Perugia, Perugia, Italy","institution_ids":["https://openalex.org/I27483092"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5135304248","display_name":"Abdul Salam Jarrah","orcid":"https://orcid.org/0000-0001-6771-2561"},"institutions":[{"id":"https://openalex.org/I199440890","display_name":"American University of Sharjah","ror":"https://ror.org/001g2fj96","country_code":"AE","type":"education","lineage":["https://openalex.org/I199440890"]}],"countries":["AE"],"is_corresponding":true,"raw_author_name":"Abdul Salam Jarrah","raw_affiliation_strings":["Department of Mathematics and Statistics, American University of Sharjah, Sharjah, United Arab Emirates. Electronic address: ajarrah@aus.edu"],"raw_orcid":"https://orcid.org/0000-0001-6771-2561","affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, American University of Sharjah, Sharjah, United Arab Emirates. Electronic address: ajarrah@aus.edu","institution_ids":["https://openalex.org/I199440890"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5135304248"],"corresponding_institution_ids":["https://openalex.org/I199440890"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":{"value":2610,"currency":"USD","value_usd":2610},"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.48438753,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"210","issue":null,"first_page":"111714","last_page":"111714"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.29339998960494995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.29339998960494995,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.20309999585151672,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10492","display_name":"Microtubule and mitosis dynamics","score":0.04560000076889992,"subfield":{"id":"https://openalex.org/subfields/1307","display_name":"Cell Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/attractor","display_name":"Attractor","score":0.641700029373169},{"id":"https://openalex.org/keywords/standard-boolean-model","display_name":"Standard Boolean model","score":0.34790000319480896},{"id":"https://openalex.org/keywords/boolean-expression","display_name":"Boolean expression","score":0.2955000102519989},{"id":"https://openalex.org/keywords/boolean-network","display_name":"Boolean network","score":0.28870001435279846},{"id":"https://openalex.org/keywords/leukemia","display_name":"Leukemia","score":0.2822999954223633},{"id":"https://openalex.org/keywords/boolean-function","display_name":"Boolean function","score":0.2775000035762787}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6453999876976013},{"id":"https://openalex.org/C164380108","wikidata":"https://www.wikidata.org/wiki/Q507187","display_name":"Attractor","level":2,"score":0.641700029373169},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.36649999022483826},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.34880000352859497},{"id":"https://openalex.org/C68481662","wikidata":"https://www.wikidata.org/wiki/Q176197","display_name":"Standard Boolean model","level":5,"score":0.34790000319480896},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.33660000562667847},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33640000224113464},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.30230000615119934},{"id":"https://openalex.org/C158465420","wikidata":"https://www.wikidata.org/wiki/Q1979515","display_name":"Boolean expression","level":3,"score":0.2955000102519989},{"id":"https://openalex.org/C134444547","wikidata":"https://www.wikidata.org/wiki/Q585230","display_name":"Boolean network","level":3,"score":0.28870001435279846},{"id":"https://openalex.org/C2778461978","wikidata":"https://www.wikidata.org/wiki/Q29496","display_name":"Leukemia","level":2,"score":0.2822999954223633},{"id":"https://openalex.org/C187455244","wikidata":"https://www.wikidata.org/wiki/Q942353","display_name":"Boolean function","level":2,"score":0.2775000035762787},{"id":"https://openalex.org/C111797529","wikidata":"https://www.wikidata.org/wiki/Q17080584","display_name":"Maximum satisfiability problem","level":3,"score":0.2653999924659729},{"id":"https://openalex.org/C7342684","wikidata":"https://www.wikidata.org/wiki/Q520777","display_name":"Boolean data type","level":2,"score":0.25859999656677246},{"id":"https://openalex.org/C2909962599","wikidata":"https://www.wikidata.org/wiki/Q180664","display_name":"Lymphoblastic Leukemia","level":3,"score":0.25859999656677246}],"mesh":[{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002648","descriptor_name":"Child","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008957","descriptor_name":"Models, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015973","descriptor_name":"Gene Expression Regulation, Leukemic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D050835","descriptor_name":"Interferon Regulatory Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050835","descriptor_name":"Interferon Regulatory Factors","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D050835","descriptor_name":"Interferon Regulatory Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D050835","descriptor_name":"Interferon Regulatory Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051560","descriptor_name":"Proto-Oncogene Proteins c-bcl-6","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051560","descriptor_name":"Proto-Oncogene Proteins c-bcl-6","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D051560","descriptor_name":"Proto-Oncogene Proteins c-bcl-6","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D051560","descriptor_name":"Proto-Oncogene Proteins c-bcl-6","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2026.111714","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111714","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:42090947","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/42090947","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1016/j.compbiomed.2026.111714","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111714","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321430","display_name":"American University of Sharjah","ror":"https://ror.org/001g2fj96"}],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":53,"referenced_works":["https://openalex.org/W1801876107","https://openalex.org/W1971224531","https://openalex.org/W1971677256","https://openalex.org/W1974195879","https://openalex.org/W1977198605","https://openalex.org/W1991711136","https://openalex.org/W1994094326","https://openalex.org/W1997941143","https://openalex.org/W1998792672","https://openalex.org/W2000266274","https://openalex.org/W2014677321","https://openalex.org/W2017798312","https://openalex.org/W2031318755","https://openalex.org/W2040002852","https://openalex.org/W2041635861","https://openalex.org/W2042431901","https://openalex.org/W2053961182","https://openalex.org/W2058704592","https://openalex.org/W2059110753","https://openalex.org/W2096185353","https://openalex.org/W2097263107","https://openalex.org/W2101940280","https://openalex.org/W2136559804","https://openalex.org/W2139391027","https://openalex.org/W2144571044","https://openalex.org/W2146473098","https://openalex.org/W2163384178","https://openalex.org/W2167031279","https://openalex.org/W2167334954","https://openalex.org/W2170222864","https://openalex.org/W2280526890","https://openalex.org/W2288284086","https://openalex.org/W2521606921","https://openalex.org/W2590406062","https://openalex.org/W2776622814","https://openalex.org/W2909547032","https://openalex.org/W3012124203","https://openalex.org/W3013993136","https://openalex.org/W3021500900","https://openalex.org/W3082777162","https://openalex.org/W3094060852","https://openalex.org/W3191638612","https://openalex.org/W3206051525","https://openalex.org/W4207043101","https://openalex.org/W4213007074","https://openalex.org/W4280621781","https://openalex.org/W4294001352","https://openalex.org/W4297256266","https://openalex.org/W4353094067","https://openalex.org/W4362506791","https://openalex.org/W4394604607","https://openalex.org/W4399886160","https://openalex.org/W4412649756"],"related_works":[],"abstract_inverted_index":{"Pediatric":[0],"B-cell":[1],"acute":[2],"lymphoblastic":[3],"leukemia":[4,165,197],"(B-ALL)":[5],"is":[6],"characterized":[7],"by":[8],"substantial":[9],"phenotypic":[10],"heterogeneity,":[11],"reflecting":[12],"the":[13,25,55,92,126,150,153],"complex":[14],"structure":[15],"of":[16,50,85,98,116,128,152,163,186,205],"its":[17,44],"underlying":[18],"gene":[19,188],"regulatory":[20,172,189],"network":[21,40,52,201],"(GRN).":[22],"To":[23],"investigate":[24],"dynamical":[26],"principles":[27],"governing":[28],"these":[29,117],"phenotypes,":[30],"we":[31,61,106,132],"model":[32,185],"a":[33,37,47,75,82,95,108,159],"curated":[34],"GRN":[35,93],"as":[36,146],"threshold":[38],"Boolean":[39,184],"(TBN)":[41],"and":[42,66,138,144,170,179,217],"analyze":[43],"behavior":[45],"across":[46],"large":[48],"ensemble":[49,80],"weighted":[51],"realizations":[53],"sharing":[54],"same":[56],"topology.":[57],"For":[58],"each":[59],"realization,":[60],"compute":[62],"all":[63,103],"asymptotic":[64],"states":[65],"project":[67],"them":[68],"onto":[69],"leukemia-relevant":[70],"key":[71],"genes":[72],"to":[73,125,149],"obtain":[74],"reduced":[76],"attractor":[77,136,154,206,213,220],"representation.":[78],"The":[79],"reveals":[81,194],"small":[83],"set":[84],"highly":[86],"recurrent,":[87],"topology-enforced":[88],"attractors,":[89],"indicating":[90],"that":[91,112,174],"admits":[94],"limited":[96],"number":[97],"robust":[99,164,196],"leukemia-associated":[100],"states.":[101],"Among":[102],"weight":[104],"configurations,":[105],"identify":[107,139],"single":[109],"representative":[110,130],"TBN":[111],"reproduces":[113,202],"over":[114,203],"97%":[115,204],"structural":[118],"attractors.":[119,198],"Applying":[120],"Multiple":[121],"Correspondence":[122],"Analysis":[123],"(MCA)":[124],"attractors":[127,166],"this":[129],"network,":[131],"uncover":[133],"three":[134,211],"well-separated":[135],"clusters":[137],"two":[140],"additional":[141],"regulators,":[142],"BCL6":[143,216],"IRF4,":[145],"major":[147],"contributors":[148],"organization":[151],"landscape.":[155],"These":[156],"findings":[157],"provide":[158],"mathematically":[160],"grounded":[161],"characterization":[162],"in":[167],"pediatric":[168],"B-ALL":[169,187],"highlight":[171],"drivers":[173],"may":[175],"guide":[176],"future":[177],"mechanistic":[178],"therapeutic":[180],"investigations.":[181],"\u2022":[182,191,199,208,215],"Threshold":[183],"network.":[190],"Ensemble":[192],"analysis":[193],"few":[195],"Single":[200],"structure.":[207],"MCA":[209],"identifies":[210],"distinct":[212],"clusters.":[214],"IRF4":[218],"drive":[219],"landscape":[221],"organization.":[222]},"counts_by_year":[],"updated_date":"2026-07-17T09:13:05.818461","created_date":"2026-05-06T00:00:00"}
