{"id":"https://openalex.org/W7131783328","doi":"https://doi.org/10.1016/j.compbiomed.2026.111598","title":"GraphUnet-SS: A novel deep learning model for protein secondary structure prediction based on U-Net architecture","display_name":"GraphUnet-SS: A novel deep learning model for protein secondary structure prediction based on U-Net architecture","publication_year":2026,"publication_date":"2026-02-27","ids":{"openalex":"https://openalex.org/W7131783328","doi":"https://doi.org/10.1016/j.compbiomed.2026.111598","pmid":"https://pubmed.ncbi.nlm.nih.gov/41759455"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2026.111598","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111598","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":false,"oa_status":"closed","oa_url":null,"any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5076466902","display_name":"Yasin G\u00f6rmez","orcid":"https://orcid.org/0000-0001-8276-2030"},"institutions":[{"id":"https://openalex.org/I12700597","display_name":"Sivas Cumhuriyet \u00dcniversitesi","ror":"https://ror.org/04f81fm77","country_code":"TR","type":"education","lineage":["https://openalex.org/I12700597"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Yasin G\u00f6rmez","raw_affiliation_strings":["Sivas Cumhuriyet University, Faculty of Economics and Administrative Sciences, Management Information Systems, Sivas, Turkey"],"affiliations":[{"raw_affiliation_string":"Sivas Cumhuriyet University, Faculty of Economics and Administrative Sciences, Management Information Systems, Sivas, Turkey","institution_ids":["https://openalex.org/I12700597"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042422813","display_name":"Mostafa Sabzekar","orcid":"https://orcid.org/0000-0002-6886-1240"},"institutions":[{"id":"https://openalex.org/I97626857","display_name":"University of Birjand","ror":"https://ror.org/03g4hym73","country_code":"IR","type":"education","lineage":["https://openalex.org/I97626857"]}],"countries":["IR"],"is_corresponding":true,"raw_author_name":"Mostafa Sabzekar","raw_affiliation_strings":["Department of Computer Engineering, Birjand University of Technology, Birjand, Iran. Electronic address: sabzekar@birjandut.ac.ir"],"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering, Birjand University of Technology, Birjand, Iran. Electronic address: sabzekar@birjandut.ac.ir","institution_ids":["https://openalex.org/I97626857"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5101960598","display_name":"Zafer Aydin","orcid":"https://orcid.org/0000-0002-8155-0674"},"institutions":[{"id":"https://openalex.org/I95293974","display_name":"Abdullah G\u00fcl University","ror":"https://ror.org/00zdyy359","country_code":"TR","type":"education","lineage":["https://openalex.org/I95293974"]}],"countries":["TR"],"is_corresponding":false,"raw_author_name":"Zafer Aydin","raw_affiliation_strings":["Abdullah G\u00fcl University, Engineering Faculty, Computer Engineering Department, Kayseri, Turkey"],"affiliations":[{"raw_affiliation_string":"Abdullah G\u00fcl University, Engineering Faculty, Computer Engineering Department, Kayseri, Turkey","institution_ids":["https://openalex.org/I95293974"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5042422813"],"corresponding_institution_ids":["https://openalex.org/I97626857"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":null,"fwci":0.0,"has_fulltext":false,"cited_by_count":0,"citation_normalized_percentile":{"value":0.74863796,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":"205","issue":null,"first_page":"111598","last_page":"111598"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.48539999127388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.48539999127388,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.4562000036239624,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.016100000590085983,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/hyperparameter","display_name":"Hyperparameter","score":0.7157999873161316},{"id":"https://openalex.org/keywords/deep-learning","display_name":"Deep learning","score":0.7071999907493591},{"id":"https://openalex.org/keywords/convolutional-neural-network","display_name":"Convolutional neural network","score":0.6344000101089478},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.5837000012397766},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.5184000134468079},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.4569000005722046},{"id":"https://openalex.org/keywords/bayesian-optimization","display_name":"Bayesian optimization","score":0.4494999945163727},{"id":"https://openalex.org/keywords/feature","display_name":"Feature (linguistics)","score":0.44679999351501465}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.743399977684021},{"id":"https://openalex.org/C8642999","wikidata":"https://www.wikidata.org/wiki/Q4171168","display_name":"Hyperparameter","level":2,"score":0.7157999873161316},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.7146000266075134},{"id":"https://openalex.org/C108583219","wikidata":"https://www.wikidata.org/wiki/Q197536","display_name":"Deep learning","level":2,"score":0.7071999907493591},{"id":"https://openalex.org/C81363708","wikidata":"https://www.wikidata.org/wiki/Q17084460","display_name":"Convolutional neural network","level":2,"score":0.6344000101089478},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.5837000012397766},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.5184000134468079},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.4569000005722046},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.4521999955177307},{"id":"https://openalex.org/C2778049539","wikidata":"https://www.wikidata.org/wiki/Q17002908","display_name":"Bayesian optimization","level":2,"score":0.4494999945163727},{"id":"https://openalex.org/C2776401178","wikidata":"https://www.wikidata.org/wiki/Q12050496","display_name":"Feature (linguistics)","level":2,"score":0.44679999351501465},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.38429999351501465},{"id":"https://openalex.org/C62614982","wikidata":"https://www.wikidata.org/wiki/Q904984","display_name":"Protein secondary structure","level":2,"score":0.362199991941452},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.3118000030517578},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.3082999885082245},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.28299999237060547},{"id":"https://openalex.org/C74197172","wikidata":"https://www.wikidata.org/wiki/Q1195339","display_name":"Directed acyclic graph","level":2,"score":0.27410000562667847},{"id":"https://openalex.org/C193415008","wikidata":"https://www.wikidata.org/wiki/Q639681","display_name":"Network architecture","level":2,"score":0.2712000012397766},{"id":"https://openalex.org/C43126263","wikidata":"https://www.wikidata.org/wiki/Q128751","display_name":"Source code","level":2,"score":0.26249998807907104},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.2556999921798706},{"id":"https://openalex.org/C59404180","wikidata":"https://www.wikidata.org/wiki/Q17013334","display_name":"Feature learning","level":2,"score":0.25529998540878296},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.25360000133514404}],"mesh":[{"descriptor_ui":"D000077321","descriptor_name":"Deep Learning","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2026.111598","is_oa":false,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2026.111598","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:41759455","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/41759455","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":null}],"best_oa_location":null,"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":54,"referenced_works":["https://openalex.org/W1986049071","https://openalex.org/W2008708467","https://openalex.org/W2029476353","https://openalex.org/W2033354942","https://openalex.org/W2036345444","https://openalex.org/W2051210555","https://openalex.org/W2057157558","https://openalex.org/W2060107523","https://openalex.org/W2061554433","https://openalex.org/W2066507577","https://openalex.org/W2107498970","https://openalex.org/W2108101947","https://openalex.org/W2109553965","https://openalex.org/W2110065044","https://openalex.org/W2113178668","https://openalex.org/W2117901689","https://openalex.org/W2118733697","https://openalex.org/W2119423166","https://openalex.org/W2122945697","https://openalex.org/W2131474431","https://openalex.org/W2140992384","https://openalex.org/W2141915739","https://openalex.org/W2142529984","https://openalex.org/W2147905080","https://openalex.org/W2158714788","https://openalex.org/W2160784118","https://openalex.org/W2163822209","https://openalex.org/W2167970914","https://openalex.org/W2554617421","https://openalex.org/W2607268717","https://openalex.org/W2791790018","https://openalex.org/W2808950571","https://openalex.org/W2886792527","https://openalex.org/W2905446269","https://openalex.org/W2921985357","https://openalex.org/W2931818966","https://openalex.org/W2950374603","https://openalex.org/W2969644707","https://openalex.org/W2987946433","https://openalex.org/W3021273536","https://openalex.org/W3022516843","https://openalex.org/W3027554922","https://openalex.org/W3042567394","https://openalex.org/W3083777350","https://openalex.org/W3093108887","https://openalex.org/W3161724381","https://openalex.org/W3216165545","https://openalex.org/W4206495991","https://openalex.org/W4210408754","https://openalex.org/W4210830887","https://openalex.org/W4220691739","https://openalex.org/W4387451333","https://openalex.org/W4393098699","https://openalex.org/W4401607432"],"related_works":[],"abstract_inverted_index":null,"counts_by_year":[],"updated_date":"2026-03-01T06:05:34.837733","created_date":"2026-02-27T00:00:00"}
