{"id":"https://openalex.org/W4407853884","doi":"https://doi.org/10.1016/j.compbiomed.2025.109846","title":"EasyCircR: Detection and reconstruction of circular RNAs post-transcriptional regulatory interaction networks","display_name":"EasyCircR: Detection and reconstruction of circular RNAs post-transcriptional regulatory interaction networks","publication_year":2025,"publication_date":"2025-02-22","ids":{"openalex":"https://openalex.org/W4407853884","doi":"https://doi.org/10.1016/j.compbiomed.2025.109846","pmid":"https://pubmed.ncbi.nlm.nih.gov/39987699"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2025.109846","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2025.109846","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.compbiomed.2025.109846","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5070612187","display_name":"Antonino Aparo","orcid":"https://orcid.org/0000-0002-4107-6680"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Antonino Aparo","raw_affiliation_strings":["Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy; Research Center LURM (Interdepartmental Laboratory of Medical Research), University of Verona, Verona, 37134, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy; Research Center LURM (Interdepartmental Laboratory of Medical Research), University of Verona, Verona, 37134, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066425280","display_name":"Simone Avesani","orcid":"https://orcid.org/0000-0003-3200-2521"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Simone Avesani","raw_affiliation_strings":["Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy. Electronic address: simone.avesani@univr.it"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy. Electronic address: simone.avesani@univr.it","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056623074","display_name":"Luca Parmigiani","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Luca Parmigiani","raw_affiliation_strings":["Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld, 33615, Germany; Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld, 33615, Germany; Graduate School \"Digital Infrastructure for the Life Sciences\"(DILS), Bielefeld, 33615, Germany"],"affiliations":[{"raw_affiliation_string":"Faculty of Technology and Center for Biotechnology (CeBiTec), Bielefeld, 33615, Germany; Bielefeld Institute for Bioinformatics Infrastructure (BIBI), Bielefeld, 33615, Germany; Graduate School \"Digital Infrastructure for the Life Sciences\"(DILS), Bielefeld, 33615, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073945848","display_name":"Sara Napoli","orcid":"https://orcid.org/0000-0002-9699-7540"},"institutions":[{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Sara Napoli","raw_affiliation_strings":["Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066518317","display_name":"Francesco Bertoni","orcid":"https://orcid.org/0000-0001-5637-8983"},"institutions":[{"id":"https://openalex.org/I4210095212","display_name":"Ente Ospedaliero Cantonale","ror":"https://ror.org/00sh19a92","country_code":"CH","type":"other","lineage":["https://openalex.org/I4210095212"]},{"id":"https://openalex.org/I4210101830","display_name":"Institute of Oncology Research","ror":"https://ror.org/01dpyn972","country_code":"CH","type":"facility","lineage":["https://openalex.org/I4210101830","https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Francesco Bertoni","raw_affiliation_strings":["Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland; Oncology Institute of Southern Switzerland, Ente Ospedaliero Cantonale, Bellinzona, 6500, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland; Oncology Institute of Southern Switzerland, Ente Ospedaliero Cantonale, Bellinzona, 6500, Switzerland","institution_ids":["https://openalex.org/I4210095212","https://openalex.org/I4210101830"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058658234","display_name":"Vincenzo Bonnici","orcid":"https://orcid.org/0000-0002-1637-7545"},"institutions":[{"id":"https://openalex.org/I124601658","display_name":"University of Parma","ror":"https://ror.org/02k7wn190","country_code":"IT","type":"education","lineage":["https://openalex.org/I124601658"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vincenzo Bonnici","raw_affiliation_strings":["Department of Mathematical, Physical and Computer Sciences, University of Parma, Parma, 43124, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Mathematical, Physical and Computer Sciences, University of Parma, Parma, 43124, Italy","institution_ids":["https://openalex.org/I124601658"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012537023","display_name":"Luciano Cascione","orcid":"https://orcid.org/0000-0002-4606-0637"},"institutions":[{"id":"https://openalex.org/I57201433","display_name":"Universit\u00e0 della Svizzera italiana","ror":"https://ror.org/03c4atk17","country_code":"CH","type":"education","lineage":["https://openalex.org/I57201433"]}],"countries":["CH"],"is_corresponding":false,"raw_author_name":"Luciano Cascione","raw_affiliation_strings":["Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland"],"affiliations":[{"raw_affiliation_string":"Institute of Oncology Research, Faculty of Biomedical Sciences, Universit\u00e0 della Svizzera italiana (USI), Bellinzona, 6500, Switzerland; Swiss Institute of Bioinformatics (SIB), Lausanne, 1015, Switzerland","institution_ids":["https://openalex.org/I57201433"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5002057785","display_name":"Rosalba Giugno","orcid":"https://orcid.org/0000-0001-9843-7638"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosalba Giugno","raw_affiliation_strings":["Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of Verona, Strada le Grazie, 15, Verona, 37134, Italy","institution_ids":["https://openalex.org/I119439378"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5066425280"],"corresponding_institution_ids":["https://openalex.org/I119439378"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":{"value":2610,"currency":"USD","value_usd":2610},"fwci":1.4616,"has_fulltext":false,"cited_by_count":2,"citation_normalized_percentile":{"value":0.79498549,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":95,"max":96},"biblio":{"volume":"188","issue":null,"first_page":"109846","last_page":"109846"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11765","display_name":"Circular RNAs in diseases","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10515","display_name":"Cancer-related molecular mechanisms research","score":0.9993000030517578,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10604","display_name":"RNA Research and Splicing","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5720647573471069},{"id":"https://openalex.org/keywords/circular-rna","display_name":"Circular RNA","score":0.45000532269477844},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.42641887068748474},{"id":"https://openalex.org/keywords/microrna","display_name":"microRNA","score":0.42598506808280945},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.41168704628944397},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3534351885318756},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.235862135887146},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2307521104812622},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.22647088766098022}],"concepts":[{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5720647573471069},{"id":"https://openalex.org/C2775893923","wikidata":"https://www.wikidata.org/wiki/Q17113455","display_name":"Circular RNA","level":4,"score":0.45000532269477844},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.42641887068748474},{"id":"https://openalex.org/C145059251","wikidata":"https://www.wikidata.org/wiki/Q310899","display_name":"microRNA","level":3,"score":0.42598506808280945},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.41168704628944397},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3534351885318756},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.235862135887146},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2307521104812622},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.22647088766098022}],"mesh":[{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D000079962","descriptor_name":"RNA, Circular","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D005786","descriptor_name":"Gene Expression Regulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012323","descriptor_name":"RNA Processing, Post-Transcriptional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012333","descriptor_name":"RNA, Messenger","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":true},{"descriptor_ui":"D035683","descriptor_name":"MicroRNAs","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2025.109846","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2025.109846","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:39987699","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39987699","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":null}],"best_oa_location":{"id":"doi:10.1016/j.compbiomed.2025.109846","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2025.109846","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G3054396286","display_name":null,"funder_award_id":"CUP B33C22000660001","funder_id":"https://openalex.org/F4320321873","funder_display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca"},{"id":"https://openalex.org/G8072862226","display_name":null,"funder_award_id":"1034","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G980899861","display_name":null,"funder_award_id":"00000033","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320321873","display_name":"Ministero dell\u2019Istruzione, dell\u2019Universit\u00e0 e della Ricerca","ror":"https://ror.org/0166hxq48"}],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":48,"referenced_works":["https://openalex.org/W1569294608","https://openalex.org/W1972898510","https://openalex.org/W2066710311","https://openalex.org/W2113525941","https://openalex.org/W2131271579","https://openalex.org/W2134629862","https://openalex.org/W2137526110","https://openalex.org/W2473991067","https://openalex.org/W2560678530","https://openalex.org/W2599812844","https://openalex.org/W2765262832","https://openalex.org/W2791184452","https://openalex.org/W2887683110","https://openalex.org/W2909481667","https://openalex.org/W2941154109","https://openalex.org/W2942409680","https://openalex.org/W3007760383","https://openalex.org/W3048556919","https://openalex.org/W3081764368","https://openalex.org/W3109532791","https://openalex.org/W3125363412","https://openalex.org/W3134906456","https://openalex.org/W3152880902","https://openalex.org/W3153087974","https://openalex.org/W3162005642","https://openalex.org/W3164073096","https://openalex.org/W3179201919","https://openalex.org/W3203773231","https://openalex.org/W3204505106","https://openalex.org/W3211402536","https://openalex.org/W3217297654","https://openalex.org/W4220868489","https://openalex.org/W4229062228","https://openalex.org/W4302013308","https://openalex.org/W4302304760","https://openalex.org/W4317883614","https://openalex.org/W4323313379","https://openalex.org/W4376131959","https://openalex.org/W4384198211","https://openalex.org/W4387966606","https://openalex.org/W4390942825","https://openalex.org/W4391448222","https://openalex.org/W4399120765","https://openalex.org/W4401082680","https://openalex.org/W6795917526","https://openalex.org/W6810113556","https://openalex.org/W6846822939","https://openalex.org/W6868772480"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W3174330474","https://openalex.org/W2971531865","https://openalex.org/W4388307780"],"abstract_inverted_index":{"Circular":[0],"RNAs":[1,5],"(circRNAs)":[2],"are":[3,113,190],"regulatory":[4,89,168,176],"that":[6,132],"play":[7],"a":[8,128],"crucial":[9],"role":[10],"in":[11,59,110],"various":[12],"biological":[13,103,180],"activities":[14],"and":[15,25,43,48,86,136,146,155,173,187],"have":[16,28],"been":[17],"identified":[18],"as":[19,30,55,91],"potential":[20,117],"biomarkers":[21],"for":[22],"neurological":[23],"disorders":[24],"cancer.":[26],"CircRNAs":[27],"emerged":[29],"significant":[31],"regulators":[32],"of":[33,41,46,65,96,157,170],"gene":[34,140],"expression":[35,64,141],"through":[36,160],"different":[37],"mechanisms,":[38],"including":[39],"regulation":[40],"transcription":[42],"splicing,":[44],"modulation":[45],"translation,":[47],"post-translational":[49],"modifications.":[50],"Additionally,":[51],"some":[52],"circRNAs":[53],"operate":[54],"microRNA":[56],"(miRNA)":[57],"sponges":[58],"the":[60,88,97,102,107,111,123,166,179],"cytoplasm,":[61],"boosting":[62],"post-transcriptional":[63,124,139,167],"target":[66,118],"genes":[67],"by":[68,81],"inhibiting":[69],"miRNA":[70,147],"activity.":[71],"Although":[72],"existing":[73],"pipelines":[74],"can":[75,100],"reconstruct":[76],"circRNAs,":[77],"identify":[78],"miRNAs":[79],"sponged":[80],"them,":[82],"retrieve":[83],"cascade-regulated":[84],"mRNAs,":[85],"represent":[87],"interactions":[90,112,159,177],"complex":[92],"circRNA-miRNA-mRNA":[93,158],"networks,":[94],"none":[95],"state-of-the-art":[98],"approaches":[99],"discriminate":[101],"level":[104],"at":[105,122,178],"which":[106],"mRNAs":[108,119],"involved":[109],"regulated,":[114],"avoiding":[115],"considering":[116],"not":[120],"regulated":[121],"level.":[125,181],"EasyCircR":[126,182],"is":[127],"novel":[129],"R":[130],"package":[131,152],"combines":[133],"circRNA":[134],"detection":[135],"reconstruction":[137],"with":[138],"analysis":[142],"(exon-intron":[143],"split":[144],"analysis)":[145],"response":[148],"element":[149],"prediction.":[150],"The":[151],"enables":[153],"estimation":[154],"visualization":[156],"an":[161],"intuitive":[162],"Shiny":[163],"application,":[164],"leveraging":[165],"nature":[169],"circRNA-miRNA":[171],"relationship":[172],"excluding":[174],"unrealistic":[175],"source":[183],"code,":[184],"Docker":[185],"container":[186],"user":[188],"guide":[189],"available":[191],"at:":[192],"https://github.com/InfOmics/EasyCircR.":[193]},"counts_by_year":[{"year":2025,"cited_by_count":2}],"updated_date":"2026-04-19T08:26:33.389920","created_date":"2025-10-10T00:00:00"}
