{"id":"https://openalex.org/W4400599733","doi":"https://doi.org/10.1016/j.compbiomed.2024.108820","title":"GateNet: A novel neural network architecture for automated flow cytometry gating","display_name":"GateNet: A novel neural network architecture for automated flow cytometry gating","publication_year":2024,"publication_date":"2024-07-12","ids":{"openalex":"https://openalex.org/W4400599733","doi":"https://doi.org/10.1016/j.compbiomed.2024.108820","pmid":"https://pubmed.ncbi.nlm.nih.gov/39002319"},"language":"en","primary_location":{"id":"doi:10.1016/j.compbiomed.2024.108820","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2024.108820","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","pubmed"],"open_access":{"is_oa":true,"oa_status":"hybrid","oa_url":"https://doi.org/10.1016/j.compbiomed.2024.108820","any_repository_has_fulltext":false},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5007230088","display_name":"L. Fisch","orcid":"https://orcid.org/0000-0001-6424-7676"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I63274643","display_name":"FH M\u00fcnster","ror":"https://ror.org/00pv45a02","country_code":"DE","type":"education","lineage":["https://openalex.org/I63274643"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Lukas Fisch","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany. Electronic address: l.fisch@uni-muenster.de","University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0001-6424-7676","affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany. Electronic address: l.fisch@uni-muenster.de","institution_ids":["https://openalex.org/I22465464","https://openalex.org/I63274643"]},{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037255370","display_name":"Michael Heming","orcid":"https://orcid.org/0000-0002-9568-2790"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Michael Heming","raw_affiliation_strings":["Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051643302","display_name":"Andreas Schulte\u2010Mecklenbeck","orcid":"https://orcid.org/0000-0003-3855-4706"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Schulte-Mecklenbeck","raw_affiliation_strings":["Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0003-3855-4706","affiliations":[{"raw_affiliation_string":"Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061814062","display_name":"Catharina C. Gro\u00df","orcid":"https://orcid.org/0000-0002-4872-9189"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Catharina C. Gross","raw_affiliation_strings":["Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5092645209","display_name":"Stefan Zumdick","orcid":null},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Zumdick","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5077817893","display_name":"Carlotta Barkhau","orcid":"https://orcid.org/0000-0002-7546-9183"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Carlotta Barkhau","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0002-7546-9183","affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051242537","display_name":"Daniel Emden","orcid":"https://orcid.org/0000-0001-7459-6634"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Emden","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0001-7459-6634","affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047848421","display_name":"Jan Ernsting","orcid":"https://orcid.org/0000-0003-4649-2111"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]},{"id":"https://openalex.org/I63274643","display_name":"FH M\u00fcnster","ror":"https://ror.org/00pv45a02","country_code":"DE","type":"education","lineage":["https://openalex.org/I63274643"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jan Ernsting","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany; Institute for Geoinformatics, University of M\u00fcnster, Germany; Faculty of Mathematics and Computer Science, University of M\u00fcnster, Germany","Faculty of Mathematics and Computer Science, University of M\u00fcnster, Germany","Institute for Geoinformatics, University of M\u00fcnster, Germany","University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany; Institute for Geoinformatics, University of M\u00fcnster, Germany; Faculty of Mathematics and Computer Science, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464","https://openalex.org/I63274643"]},{"raw_affiliation_string":"Faculty of Mathematics and Computer Science, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"Institute for Geoinformatics, University of M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]},{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035949410","display_name":"Ramona Leenings","orcid":null},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ramona Leenings","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0002-9137-7510","affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037629380","display_name":"Kelvin Sarink","orcid":"https://orcid.org/0000-0002-4840-5619"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Kelvin Sarink","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":"https://orcid.org/0000-0002-4840-5619","affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038716495","display_name":"Nils R. Winter","orcid":"https://orcid.org/0000-0002-6241-1492"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nils R. Winter","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067261122","display_name":"Udo Dannlowski","orcid":"https://orcid.org/0000-0002-0623-3759"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Udo Dannlowski","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038373894","display_name":"Heinz Wiendl","orcid":"https://orcid.org/0000-0003-4310-3432"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Heinz Wiendl","raw_affiliation_strings":["Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076180609","display_name":"Gerd Meyer zu H\u00f6rste","orcid":"https://orcid.org/0000-0002-4341-4719"},"institutions":[{"id":"https://openalex.org/I4210103666","display_name":"University Hospital M\u00fcnster","ror":"https://ror.org/01856cw59","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I4210103666"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Gerd Meyer zu H\u00f6rste","raw_affiliation_strings":["Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Neurology with Institute of Translational Neurology, University and University Hospital M\u00fcnster, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I4210103666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5036108757","display_name":"Tim Hahn","orcid":"https://orcid.org/0000-0002-8929-4134"},"institutions":[{"id":"https://openalex.org/I22465464","display_name":"University of M\u00fcnster","ror":"https://ror.org/00pd74e08","country_code":"DE","type":"education","lineage":["https://openalex.org/I22465464"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Tim Hahn","raw_affiliation_strings":["University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"University of M\u00fcnster, Institute for Translational Psychiatry, M\u00fcnster, Germany","institution_ids":["https://openalex.org/I22465464"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":15,"corresponding_author_ids":["https://openalex.org/A5007230088"],"corresponding_institution_ids":["https://openalex.org/I22465464","https://openalex.org/I63274643"],"apc_list":{"value":2610,"currency":"USD","value_usd":2610},"apc_paid":{"value":2610,"currency":"USD","value_usd":2610},"fwci":1.3251,"has_fulltext":false,"cited_by_count":6,"citation_normalized_percentile":{"value":0.79856194,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"179","issue":null,"first_page":"108820","last_page":"108820"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8388000130653381,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.8388000130653381,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11255","display_name":"Microfluidic and Bio-sensing Technologies","score":0.07270000129938126,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.022299999371170998,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/gating","display_name":"Gating","score":0.826033353805542},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7220709323883057},{"id":"https://openalex.org/keywords/flow-cytometry","display_name":"Flow cytometry","score":0.6186746954917908},{"id":"https://openalex.org/keywords/artificial-neural-network","display_name":"Artificial neural network","score":0.5360174179077148},{"id":"https://openalex.org/keywords/cerebrospinal-fluid","display_name":"Cerebrospinal fluid","score":0.5061265826225281},{"id":"https://openalex.org/keywords/process","display_name":"Process (computing)","score":0.47943586111068726},{"id":"https://openalex.org/keywords/cytometry","display_name":"Cytometry","score":0.4174361228942871},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3770119249820709},{"id":"https://openalex.org/keywords/neuroscience","display_name":"Neuroscience","score":0.22302302718162537},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.1972760260105133},{"id":"https://openalex.org/keywords/pathology","display_name":"Pathology","score":0.1642698049545288},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1257210671901703},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.10442441701889038},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.10264572501182556}],"concepts":[{"id":"https://openalex.org/C194544171","wikidata":"https://www.wikidata.org/wiki/Q21105679","display_name":"Gating","level":2,"score":0.826033353805542},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7220709323883057},{"id":"https://openalex.org/C553184892","wikidata":"https://www.wikidata.org/wiki/Q1141429","display_name":"Flow cytometry","level":2,"score":0.6186746954917908},{"id":"https://openalex.org/C50644808","wikidata":"https://www.wikidata.org/wiki/Q192776","display_name":"Artificial neural network","level":2,"score":0.5360174179077148},{"id":"https://openalex.org/C2779651940","wikidata":"https://www.wikidata.org/wiki/Q54196","display_name":"Cerebrospinal fluid","level":2,"score":0.5061265826225281},{"id":"https://openalex.org/C98045186","wikidata":"https://www.wikidata.org/wiki/Q205663","display_name":"Process (computing)","level":2,"score":0.47943586111068726},{"id":"https://openalex.org/C2780339063","wikidata":"https://www.wikidata.org/wiki/Q5201367","display_name":"Cytometry","level":3,"score":0.4174361228942871},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3770119249820709},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.22302302718162537},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.1972760260105133},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.1642698049545288},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1257210671901703},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.10442441701889038},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.10264572501182556}],"mesh":[{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D005434","descriptor_name":"Flow Cytometry","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016571","descriptor_name":"Neural Networks, Computer","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":2,"locations":[{"id":"doi:10.1016/j.compbiomed.2024.108820","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2024.108820","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},{"id":"pmid:39002319","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/39002319","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in biology and medicine","raw_type":null}],"best_oa_location":{"id":"doi:10.1016/j.compbiomed.2024.108820","is_oa":true,"landing_page_url":"https://doi.org/10.1016/j.compbiomed.2024.108820","pdf_url":null,"source":{"id":"https://openalex.org/S44278595","display_name":"Computers in Biology and Medicine","issn_l":"0010-4825","issn":["0010-4825","1879-0534"],"is_oa":false,"is_in_doaj":false,"is_core":true,"host_organization":"https://openalex.org/P4310320990","host_organization_name":"Elsevier BV","host_organization_lineage":["https://openalex.org/P4310320990"],"host_organization_lineage_names":["Elsevier BV"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Computers in Biology and Medicine","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":false,"grobid_xml":false},"content_urls":null,"referenced_works_count":36,"referenced_works":["https://openalex.org/W1583837637","https://openalex.org/W2047601088","https://openalex.org/W2112493011","https://openalex.org/W2142925501","https://openalex.org/W2166355785","https://openalex.org/W2290269515","https://openalex.org/W2533463831","https://openalex.org/W2555502666","https://openalex.org/W2612690371","https://openalex.org/W2761095749","https://openalex.org/W2761516325","https://openalex.org/W2884561390","https://openalex.org/W2951566836","https://openalex.org/W2960228757","https://openalex.org/W2963691377","https://openalex.org/W2964054038","https://openalex.org/W2971314786","https://openalex.org/W2980542459","https://openalex.org/W2982252373","https://openalex.org/W2999905431","https://openalex.org/W3006436762","https://openalex.org/W3049397729","https://openalex.org/W3093200204","https://openalex.org/W3131148704","https://openalex.org/W3152673411","https://openalex.org/W3193301525","https://openalex.org/W4225308588","https://openalex.org/W4312248217","https://openalex.org/W4388295242","https://openalex.org/W4394593080","https://openalex.org/W6676801736","https://openalex.org/W6739901393","https://openalex.org/W6755477022","https://openalex.org/W6766978945","https://openalex.org/W6773968610","https://openalex.org/W6847748685"],"related_works":["https://openalex.org/W2176701861","https://openalex.org/W4251194061","https://openalex.org/W1572687853","https://openalex.org/W3214446176","https://openalex.org/W2538538514","https://openalex.org/W3009159775","https://openalex.org/W1966652204","https://openalex.org/W2013448542","https://openalex.org/W2002900699","https://openalex.org/W4283393906"],"abstract_inverted_index":{"BACKGROUND":[0],"AND":[1],"OBJECTIVE:":[2],"Flow":[3],"cytometry":[4],"is":[5,43,52,84,114,123,136],"a":[6,60,81,126,254],"widely":[7,255],"used":[8,85],"technique":[9],"for":[10,65,73],"identifying":[11,40],"cell":[12,41],"populations":[13],"in":[14,29,212],"patient-derived":[15],"fluids,":[16],"such":[17],"as":[18,253],"peripheral":[19],"blood":[20],"(PB)":[21],"or":[22],"cerebrospinal":[23],"fluid":[24],"(CSF).":[25],"Despite":[26],"its":[27,167,240],"ubiquity":[28],"research":[30],"and":[31,45,96,218,233],"clinical":[32],"practice,":[33],"the":[34,71,109,117,139,161,216],"process":[35],"of":[36,49,112,174,221,261],"gating,":[37],"i.e.,":[38],"manually":[39,101],"types,":[42],"labor-intensive":[44,217],"error-prone.":[46],"The":[47,133,224],"objective":[48],"this":[50,55,79],"study":[51,80],"to":[53,116,125,130,150,186,236,247],"address":[54],"challenge":[56],"by":[57,104],"introducing":[58],"GateNet,":[59],"neural":[61,225],"network":[62,226],"architecture":[63],"designed":[64],"fully":[66,208],"end-to-end":[67,209],"automated":[68,210],"gating":[69,191,211],"without":[70],"need":[72],"correcting":[74],"batch":[75],"effects.":[76],"METHODS:":[77],"For":[78],"unique":[82],"dataset":[83,129],"which":[86,99],"comprises":[87],"over":[88],"8,000,000":[89],"events":[90],"from":[91,148],"N":[92],"=":[93],"127":[94],"PB":[95],"CSF":[97],"samples":[98,156,185,232,246],"were":[100],"labeled":[102],"independently":[103],"four":[105],"experts.":[106],"Applying":[107],"cross-validation,":[108],"classification":[110,134],"performance":[111,135,154,229],"GateNet":[113,122,143,165,181,193,206,252],"compared":[115],"human":[118],"experts":[119],"performance.":[120,189],"Additionally,":[121],"applied":[124],"publicly":[127,162],"available":[128,163],"evaluate":[131],"generalization.":[132],"measured":[137],"using":[138],"F1":[140,145,172],"score.":[141],"RESULTS:":[142],"achieves":[144,227],"scores":[146],"ranging":[147],"0.910":[149],"0.997":[151],"demonstrating":[152],"human-level":[153,188,228,249],"on":[155,230],"unseen":[157,231],"during":[158],"training.":[159],"In":[160],"dataset,":[164],"confirms":[166],"generalization":[168],"capabilities":[169],"with":[170,192],"an":[171],"score":[173],"0.936.":[175],"Importantly,":[176],"we":[177],"also":[178],"show":[179],"that":[180],"only":[182,194,244],"requires":[183],"\u224810":[184],"reach":[187,248],"Finally,":[190],"takes":[195],"15":[196],"microseconds":[197],"per":[198],"event":[199],"utilizing":[200],"graphics":[201],"processing":[202],"units":[203],"(GPU).":[204],"CONCLUSIONS:":[205],"enables":[207],"flow":[213,262],"cytometry,":[214],"overcoming":[215],"error-prone":[219],"nature":[220],"manual":[222],"adjustments.":[223],"generalizes":[234],"well":[235],"diverse":[237],"datasets.":[238],"Notably,":[239],"data":[241],"efficiency,":[242],"requiring":[243],"\u223c10":[245],"performance,":[250],"positions":[251],"applicable":[256],"tool":[257],"across":[258],"various":[259],"domains":[260],"cytometry.":[263]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
